Nicholson T. Collier

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 26

Top Topics

Active Learning

Hypothesis Testing

Simulation Model

Sequential Monte Carlo

Top Venues

IPDPS Workshops

Publications

Connor Robertson, Cosmin Safta, Nicholson T. Collier, Jonathan Ozik, Jaideep Ray
Bayesian calibration of stochastic agent based model via random forest. CoRR (2024)
Arindam Fadikar, Abby Stevens, Nicholson T. Collier, Kok Ben Toh, Olga Morozova, Anna Hotton, Jared Clark, David Higdon, Jonathan Ozik
Towards Improved Uncertainty Quantification of Stochastic Epidemic Models Using Sequential Monte Carlo. IPDPS (Workshops) (2024)
Mihael Hategan-Marandiuc, André Merzky, Nicholson T. Collier, Ketan Maheshwari, Jonathan Ozik, Matteo Turilli, Andreas Wilke, Justin M. Wozniak, Kyle Chard, Ian T. Foster, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney
PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs. CoRR (2023)
Mihael Hategan-Marandiuc, André Merzky, Nicholson T. Collier, Ketan Maheshwari, Jonathan Ozik, Matteo Turilli, Andreas Wilke, Justin M. Wozniak, Kyle Chard, Ian T. Foster, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney
PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs. e-Science (2023)
Arindam Fadikar, Nicholson T. Collier, Abby Stevens, Jonathan Ozik, Mickaël Binois, Kok Ben Toh
Trajectory-Oriented Optimization of Stochastic Epidemiological Models. WSC (2023)
Nicholson T. Collier, Justin M. Wozniak, Abby Stevens, Yadu N. Babuji, Mickaël Binois, Ardindam Fadikar, Alexandra Würth, Kyle Chard, Jonathan Ozik
Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis. CoRR (2023)
Nicholson T. Collier, Justin M. Wozniak, Abby Stevens, Yadu N. Babuji, Mickaël Binois, Arindam Fadikar, Alexandra Würth, Kyle Chard, Jonathan Ozik
Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis. IPDPS Workshops (2023)
Atesmachew Hailegiorgis, Yuji Ishida, Nicholson T. Collier, Michio Imamura, Zhenzhen Shi, Vladimir Reinharz, Masataka Tsuge, Danny Barash, Nobuhiko Hiraga, Hiroshi Yokomichi, Chise Tateno, Jonathan Ozik, Susan L. Uprichard, Kazuaki Chayama, Harel Dahari
Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics. PLoS Comput. Biol. 19 (8) (2023)
Nicholson T. Collier, Jonathan Ozik
Distributed Agent-Based Simulation with Repast4Py. WSC (2022)
Maria DeYoreo, Carolyn M. Rutter, Jonathan Ozik, Nicholson T. Collier
Sequentially calibrating a Bayesian microsimulation model to incorporate new information and assumptions. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Stacy Tessler Lindau, Jennifer A. Makelarski, Chaitanya Kaligotla, Emily Abramsohn, David G. Beiser, Chiahung Chou, Nicholson T. Collier, Elbert S. Huang, Charles M. Macal, Jonathan Ozik, Elizabeth L. Tung
Building and experimenting with an agent-based model to study the population-level impact of CommunityRx, a clinic-based community resource referral intervention. PLoS Comput. Biol. 17 (10) (2021)
Jonathan Ozik, Justin M. Wozniak, Nicholson T. Collier, Charles M. Macal, Mickaël Binois
A population data-driven workflow for COVID-19 modeling and learning. Int. J. High Perform. Comput. Appl. 35 (5) (2021)
Eric Tatara, John Schneider, Madeline Quasebarth, Nicholson T. Collier, Harold Pollack, Basmattee Boodram, Samuel H. Friedman, Elizabeth Salisbury-Afshar, Mary Ellen Mackesy-Amiti, Jonathan Ozik
Application of Distributed Agent-based Modeling to Investigate Opioid Use Outcomes in Justice Involved Populations. IPDPS Workshops (2021)
Bogdan Mucenic, Chaitanya Kaligotla, Abby Stevens, Jonathan Ozik, Nicholson T. Collier, Charles M. Macal
Load Balancing Schemes for Large Synthetic Population-Based Complex Simulators. IPDPS Workshops (2021)
Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara
Experiences in Developing a Distributed Agent-based Modeling Toolkit with Python. PyHPC@SC (2020)
Chaitanya Kaligotla, Jonathan Ozik, Nicholson T. Collier, Charles M. Macal, Kelly Boyd, Jennifer A. Makelarski, Elbert S. Huang, Stacy T. Lindau
Model Exploration of an Information-Based Healthcare Intervention Using Parallelization and Active Learning. J. Artif. Soc. Soc. Simul. 23 (4) (2020)
Justin M. Wozniak, Hyun Seung Yoo, Jamaludin Mohd-Yusof, Bogdan Nicolae, Nicholson T. Collier, Jonathan Ozik, Thomas S. Brettin, Rick Stevens
High-bypass Learning: Automated Detection of Tumor Cells That Significantly Impact Drug Response. MLHPC/AI4S@SC (2020)
Eric Tatara, Nicholson T. Collier, Jonathan Ozik, Alexander Gutfraind, Scott J. Cotler, Harel Dahari, Marian Major, Basmattee Boodram
Multi-Objective Model Exploration of Hepatitis C Elimination in an Agent-Based Model of People who Inject Drugs. WSC (2019)
Charles M. Macal, Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara, John T. Murphy
Chisim: an Agent-based simulation Model of Social Interactions in a Large Urban Area. WSC (2018)
Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Gary An
Extreme-Scale Dynamic Exploration of a Distributed Agent-Based Model With the EMEWS Framework. IEEE Trans. Comput. Soc. Syst. 5 (3) (2018)
Justin M. Wozniak, Rajeev Jain, Prasanna Balaprakash, Jonathan Ozik, Nicholson T. Collier, John Bauer, Fangfang Xia, Thomas S. Brettin, Rick Stevens, Jamaludin Mohd-Yusof, Cristina Garcia-Cardona, Brian Van Essen, Matthew Baughman
CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research. BMC Bioinform. (18) (2018)
George F. Zaki, Justin M. Wozniak, Jonathan Ozik, Nicholson T. Collier, Thomas S. Brettin, Rick Stevens
Portable and Reusable Deep Learning Infrastructure with Containers to Accelerate Cancer Studies. ESPM2@SC (2018)
Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Chase Cockrell, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Randy W. Heiland, Gary An, Paul Macklin
High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow. BMC Bioinform. (18) (2018)
Chaitanya Kaligotla, Jonathan Ozik, Nicholson T. Collier, Charles M. Macal, Stacy T. Lindau, Emily Abramsohn, Elbert S. Huang
Modeling an Information-based Community Health Intervention on the South Side of Chicago. WSC (2018)
Eric Tatara, Nicholson T. Collier, Jonathan Ozik, Charles M. Macal
Endogenous Social Networks from Large-Scale Agent-Based Models. IPDPS Workshops (2017)
Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Carmine Spagnuolo
From desktop to Large-Scale Model Exploration with Swift/T. WSC (2016)
John T. Murphy, Jonathan Ozik, Nicholson T. Collier, Mark Altaweel, Richard B. Lammers, Alexander A. Prusevich, Andrew D. Kliskey, Lilian N. Alessa
Simulating regional hydrology and water management: an integrated agent-based approach. WSC (2015)
Nicholson T. Collier, Jonathan Ozik, Charles M. Macal
Large-Scale Agent-Based Modeling with Repast HPC: A Case Study in Parallelizing an Agent-Based Model. Euro-Par Workshops (2015)
Jonathan Ozik, Nicholson T. Collier, Todd Combs, Charles M. Macal, Michael J. North
Repast Simphony Statecharts. J. Artif. Soc. Soc. Simul. 18 (3) (2015)
Jonathan Ozik, Michael Wilde, Nicholson T. Collier, Charles M. Macal
Adaptive Simulation with Repast Simphony and Swift. Euro-Par Workshops (1) (2014)
Jonathan Ozik, Nicholson T. Collier, John T. Murphy, Mark Altaweel, Richard B. Lammers, Alexander A. Prusevich, Andrew D. Kliskey, Lilian N. Alessa
Simulating water, individuals, and management using a coupled and distributed approach. WSC (2014)
Michael J. North, Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara, Charles M. Macal, Mark J. Bragen, Pam Sydelko
Complex adaptive systems modeling with Repast Simphony. Complex Adapt. Syst. Model. 1 (2013)
Nicholson T. Collier, Jonathan Ozik
Test-driven agent-based simulation development. WSC (2013)
Nicholson T. Collier, Michael J. North
Parallel agent-based simulation with Repast for High Performance Computing. Simul. 89 (10) (2013)
Jonathan Ozik, Nicholson T. Collier, John T. Murphy, Michael J. North
The ReLogo agent-based modeling language. WSC (2013)
Charles M. Macal, Michael J. North, Nicholson T. Collier, Vanja M. Dukic, Diane S. Lauderdale, Michael Z. David, Robert S. Daum, Philip Shumm, James A. Evans, Jocelyn R. Wilder, Duane T. Wegener
Modeling the spread of community-associated MRSA. WSC (2012)
Michael J. North, T. R. Howe, Nicholson T. Collier, Jerry R. Vos
Demeter, Persephone, and the Search for Emergence in Agent-Based Models. AAAI Fall Symposium: Interaction and Emergent Phenomena in Societies of Agents (2006)
Michael J. North, T. R. Howe, Nicholson T. Collier, Jerry R. Vos
A Declarative Model Assembly Infrastructure for Verification and Validation. WCSS (2006)
Michael J. North, Nicholson T. Collier, Jerry R. Vos
Experiences creating three implementations of the repast agent modeling toolkit. ACM Trans. Model. Comput. Simul. 16 (1) (2006)