Ioannis P. Androulakis

Publication Activity (10 Years)

Years Active: 1995-2023
Publications (10 Years): 4

Top Topics

Clinically Relevant

Medical Practitioners

Disease Outbreaks

Top Venues

Comput. Chem. Eng.

IMA J. Math. Control. Inf.

Publications

Florentina Nicolau, Hugues Mounier, Ioannis P. Androulakis
HPA axis differential flatness and Liouvillian study for higher resiliency investigations. IMA J. Math. Control. Inf. 40 (4) (2023)
Panteleimon D. Mavroudis, Jeremy D. Scheff, John C. Doyle, Yoram Vodovotz, Ioannis P. Androulakis
The Impact of Stochasticity and Its Control on a Model of the Inflammatory Response. Comput. 7 (1) (2019)
Ioannis P. Androulakis
The quest for digital health: From diseases to patients. Comput. Chem. Eng. 127 (2019)
Rohit T. Rao, Megerle L. Scherholz, Clara Hartmanshenn, Seul-A. Bae, Ioannis P. Androulakis
On the analysis of complex biological supply chains: From process systems engineering to quantitative systems pharmacology. Comput. Chem. Eng. 107 (2017)
Tung T. Nguyen, John S. A. Mattick, Qian Yang, Mehmet A. Orman, Marianthi G. Ierapetritou, Francois Berthiaume, Ioannis P. Androulakis
Bioinformatics analysis of transcriptional regulation of circadian genes in rat liver. BMC Bioinform. 15 (2014)
Ioannis P. Androulakis
A chemical engineer's perspective on health and disease. Comput. Chem. Eng. 71 (2014)
Andreas A. Linninger, Ioannis P. Androulakis
Biosystems modeling and engineering. Comput. Chem. Eng. 71 (2014)
Jeremy D. Scheff, Panteleimon D. Mavroudis, Panagiota T. Foteinou, Gary An, Steve E. Calvano, John Doyle, Thomas E. Dick, Stephen F. Lowry, Yoram Vodovotz, Ioannis P. Androulakis
A multiscale modeling approach to inflammation: A case study in human endotoxemia. J. Comput. Phys. 244 (2013)
Georges K. Saharidis, Ioannis P. Androulakis, Marianthi G. Ierapetritou
Model building using bi-level optimization. J. Glob. Optim. 49 (1) (2011)
Jeremy D. Scheff, Alyssa K. Kosmides, Steve E. Calvano, Stephen F. Lowry, Ioannis P. Androulakis
Pulsatile Glucocorticoid Secretion: Origins and Downstream Effects. IEEE Trans. Biomed. Eng. 58 (12) (2011)
Tung T. Nguyen, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis
Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: Transcriptional dynamics and regulatory structures. BMC Bioinform. 11 (2010)
Meric A. Ovacik, Siddharth Sukumaran, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis
Circadian signatures in rat liver: from gene expression to pathways. BMC Bioinform. 11 (2010)
Vidya V. Iyer, Ioannis P. Androulakis, Charles M. Roth, Marianthi G. Ierapetritou
Effects of Triadimefon on the Metabolism of Cultured Hepatocytes. BIBE (2010)
Jeremy D. Scheff, Ioannis P. Androulakis, Steve E. Calvano, Stephen F. Lowry
Modeling Circadian Rhythms in Inflammation. BIBE (2010)
Tung T. Nguyen, Panagiota T. Foteinou, Ioannis P. Androulakis, Steve E. Calvano, Stephen F. Lowry
Dynamic Complexity of the Temporal Transcriptional Regulation Program in Human Endotoxemia. BIBE (2010)
Tung T. Nguyen, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis
Importance of replication in analyzing time-series gene expression data: Corticosteroid dynamics and circadian patterns in rat liver. BMC Bioinform. 11 (2010)
Panagiota T. Foteinou, Eric Yang, Georges K. Saharidis, Marianthi G. Ierapetritou, Ioannis P. Androulakis
A mixed-integer optimization framework for the synthesis and analysis of regulatory networks. J. Glob. Optim. 43 (2-3) (2009)
Panagiota T. Foteinou, Eric Yang, Ioannis P. Androulakis
Networks, biology and systems engineering: A case study in inflammation. Comput. Chem. Eng. 33 (12) (2009)
Tung T. Nguyen, Ioannis P. Androulakis
Recent Advances in the Computational Discovery of Transcription Factor Binding Sites. Algorithms 2 (1) (2009)
Eric Yang, Ioannis P. Androulakis
Assessing and selecting gene expression signals based upon the quality of the measured dynamics. BMC Bioinform. 10 (2009)
Eric Yang, Timothy Maguire, Martin L. Yarmush, Ioannis P. Androulakis
Informative gene selection and design of regulatory networks using integer optimization. Comput. Chem. Eng. 32 (4-5) (2008)
Kevin C. Furman, Ioannis P. Androulakis
A novel MINLP-based representation of the original complex model for predicting gasoline emissions. Comput. Chem. Eng. 32 (12) (2008)
Eric Yang, Timothy Maguire, Martin L. Yarmush, Francois Berthiaume, Ioannis P. Androulakis
Bioinformatics analysis of the early inflammatory response in a rat thermal injury model. BMC Bioinform. 8 (2007)
Eric Yang, Panagiota T. Foteinou, K. R. King, Martin L. Yarmush, Ioannis P. Androulakis
A novel non-overlapping bi-clustering algorithm for network generation using living cell array data. Bioinform. 23 (17) (2007)
Ioannis P. Androulakis
New approaches for representing, analyzing and visualizing complex kinetic transformations. Comput. Chem. Eng. 31 (1) (2006)
Eric H. Yang, Ioannis P. Androulakis
Assessing the Information Content of Short Time Series Expression Data. EMBC (2006)
Ioannis P. Androulakis
Selecting maximally informative genes. Comput. Chem. Eng. 29 (3) (2005)
Ioannis P. Androulakis
"Store and retrieve" representations of dynamic systems motivated by studies in gas phase chemical kinetics. Comput. Chem. Eng. 28 (11) (2004)
Ioannis P. Androulakis, Costas D. Maranas, Christodoulos A. Floudas
Prediction of Oligopeptide Conformations via Deterministic Global Optimization. J. Glob. Optim. 11 (1) (1997)
Costas D. Maranas, Ioannis P. Androulakis, Christodoulos A. Floudas
A deterministic global optimization approach for the protein folding problem. Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding (1995)
Ioannis P. Androulakis, Costas D. Maranas, Christodoulos A. Floudas
αBB: A global optimization method for general constrained nonconvex problems. J. Glob. Optim. 7 (4) (1995)