Eran Agmon

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 12

Top Topics

Embodied Agents

Document Management

Computational Biology

Top Venues

Publications

Christopher J. Skalnik, Sean Y. Cheah, Mica Y. Yang, Mattheus B. Wolff, Ryan K. Spangler, Lee Talman, Jerry H. Morrison, Shayn M. Peirce, Eran Agmon, Markus W. Covert
Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses. PLoS Comput. Biol. 19 (6) (2023)
Eran Agmon, Ryan K. Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison, Markus W. Covert
Vivarium: an interface and engine for integrative multiscale modeling in computational biology. Bioinform. 38 (7) (2022)
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Res. 50 (W1) (2022)
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha, Jacky Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. CoRR (2022)
Eran Agmon
Deriving the bodily grounding of living beings with molecular autopoiesis. Adapt. Behav. 28 (1) (2020)
Eran Agmon, Ryan K. Spangler
A Multi-Scale Approach to Modeling E. coli Chemotaxis. Entropy 22 (10) (2020)
Eran Agmon, Matthew D. Egbert, Nathaniel Virgo
The Biological Foundations of Enactivism: A Report on a Workshop Held at Artificial Life XV. Artif. Life 24 (1) (2018)
Eran Agmon, James A. Glazier, Randall D. Beer
Structural coupling of a Potts model cell. ECAL (2017)
Nathaniel Virgo, Eran Agmon, Chrisantha Fernando
Lineage selection leads to evolvability at large population sizes. ECAL (2017)
Eran Agmon, Alexander J. Gates, Valentin Churavy, Randall D. Beer
Exploring the Space of Viable Configurations in a Model of Metabolism-Boundary Co-construction. Artif. Life 22 (2) (2016)
Eran Agmon, Alexander J. Gates, Randall D. Beer
The Structure of Ontogenies in a Model Protocell. Artif. Life 22 (4) (2016)
Tim Taylor, Mark A. Bedau, Alastair Channon, David H. Ackley, Wolfgang Banzhaf, Guillaume Beslon, Emily L. Dolson, Tom Froese, Simon J. Hickinbotham, Takashi Ikegami, Barry McMullin, Norman H. Packard, Steen Rasmussen, Nathaniel Virgo, Eran Agmon, Edward Clark, Simon McGregor, Charles Ofria, Glen Ropella, Lee Spector, Kenneth O. Stanley, Adam Stanton, Christopher Steven Timperley, Anya E. Vostinar, Michael J. Wiser
Open-Ended Evolution: Perspectives from the OEE Workshop in York. Artif. Life 22 (3) (2016)
Eran Agmon, Alexander J. Gates, Randall D. Beer
Ontogeny and adaptivity in a model protocell. ECAL (2015)
Eran Agmon, Randall D. Beer
The evolution and analysis of action switching in embodied agents. Adapt. Behav. 22 (1) (2014)
Eran Agmon, Alexander J. Gates, Valentin Churavy, Randall D. Beer
Quantifying Robustness in a Spatial Model of Metabolism-Boundary Co-Construction. ALIFE (2014)