Markus W. Covert

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 3

Top Topics

Parameter Estimation

Top Venues

PLoS Comput. Biol.

Database J. Biol. Databases Curation

Publications

Christopher J. Skalnik, Sean Y. Cheah, Mica Y. Yang, Mattheus B. Wolff, Ryan K. Spangler, Lee Talman, Jerry H. Morrison, Shayn M. Peirce, Eran Agmon, Markus W. Covert
Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses. PLoS Comput. Biol. 19 (6) (2023)
Eran Agmon, Ryan K. Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison, Markus W. Covert
Vivarium: an interface and engine for integrative multiscale modeling in computational biology. Bioinform. 38 (7) (2022)
David A. Van Valen, Takamasa Kudo, Keara M. Lane, Derek N. Macklin, Nicolas T. Quach, Mialy M. DeFelice, Inbal Maayan, Yu Tanouchi, Euan A. Ashley, Markus W. Covert
Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments. PLoS Comput. Biol. 12 (11) (2016)
Jonathan R. Karr, Harendra Guturu, Edward Y. Chen, Stuart L. Blair, Jonathan M. Irish, Nikesh Kotecha, Markus W. Covert
NetworkPainter: dynamic intracellular pathway animation in Cytobank. BMC Bioinform. 16 (2015)
Jonathan R. Karr, Alex H. Williams, Jeremy D. Zucker, Andreas Raue, Bernhard Steiert, Jens Timmer, Clemens Kreutz, Simon Wilkinson, Brandon A. Allgood, Brian M. Bot, Bruce R. Hoff, Michael R. Kellen, Markus W. Covert, Gustavo A. Stolovitzky, Pablo Meyer
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models. PLoS Comput. Biol. 11 (5) (2015)
Jonathan R. Karr, Nolan C. Phillips, Markus W. Covert
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions. Database J. Biol. Databases Curation 2014 (2014)
Ruby Lee, Jonathan R. Karr, Markus W. Covert
WholeCellViz: data visualization for whole-cell models. BMC Bioinform. 14 (2013)
Jonathan R. Karr, Jayodita C. Sanghvi, Derek N. Macklin, Abhishek Arora, Markus W. Covert
WholeCellKB: model organism databases for comprehensive whole-cell models. Nucleic Acids Res. 41 (Database-Issue) (2013)
Elsa W. Birch, Nicholas A. Ruggero, Markus W. Covert
Determining Host Metabolic Limitations on Viral Replication via Integrated Modeling and Experimental Perturbation. PLoS Comput. Biol. 8 (10) (2012)
Junhee Seok, Wenzhong Xiao, Lyle L. Moldawer, Ronald W. Davis, Markus W. Covert
A dynamic network of transcription in LPS-treated human subjects. BMC Syst. Biol. 3 (2009)
Markus W. Covert, Nan Xiao, Tiffany J. Chen, Jonathan R. Karr
. Bioinform. 24 (18) (2008)