Shayn M. Peirce

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 8

Top Topics

Likelihood Ratio

Hypothesis Test

Temporal Patterns

Top Venues

PLoS Comput. Biol.

Publications

Christopher J. Skalnik, Sean Y. Cheah, Mica Y. Yang, Mattheus B. Wolff, Ryan K. Spangler, Lee Talman, Jerry H. Morrison, Shayn M. Peirce, Eran Agmon, Markus W. Covert
Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses. PLoS Comput. Biol. 19 (6) (2023)
Nikita Sivakumar, Helen V. Warner, Shayn M. Peirce, Matthew Lazzara
Correction: A computational modeling approach for predicting multicell spheroid patterns based on signaling-induced differential adhesion. PLoS Comput. Biol. 19 (5) (2023)
Nikita Sivakumar, Cameron Mura, Shayn M. Peirce
Combining Machine Learning and Agent-Based Modeling to Study Biomedical Systems. CoRR (2022)
Nikita Sivakumar, Helen V. Warner, Shayn M. Peirce, Matthew Lazzara
A computational modeling approach for predicting multicell spheroid patterns based on signaling-induced differential adhesion. PLoS Comput. Biol. 18 (11) (2022)
Eran Agmon, Ryan K. Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison, Markus W. Covert
Vivarium: an interface and engine for integrative multiscale modeling in computational biology. Bioinform. 38 (7) (2022)
Amanda M. Westman, Shayn M. Peirce, George J. Christ, Silvia S. Blemker
Agent-based model provides insight into the mechanisms behind failed regeneration following volumetric muscle loss injury. PLoS Comput. Biol. 17 (5) (2021)
Bruce A. Corliss, H. Clifton Ray, James T. Patrie, Jennifer Mansour, Sam Kesting, Janice H. Park, Gustavo K. Rohde, Paul A. Yates, Kevin A. Janes, Shayn M. Peirce
CIRCOAST: a statistical hypothesis test for cellular colocalization with network structures. Bioinform. 35 (4) (2019)
Bruce A. Corliss, H. Clifton Ray, James T. Patrie, Jennifer Mansour, Sam Kesting, Janice H. Park, Gustavo K. Rohde, Paul A. Yates, Kevin A. Janes, Shayn M. Peirce
CIRCOAST: a statistical hypothesis test for cellular colocalization with network structures. Bioinform. 35 (3) (2019)
Alexander M. Bailey, Michael B. Lawrence, Hulan Shang, Adam J. Katz, Shayn M. Peirce
Agent-Based Model of Therapeutic Adipose-Derived Stromal Cell Trafficking during Ischemia Predicts Ability To Roll on P-Selectin. PLoS Comput. Biol. 5 (2) (2009)
Bryan C. Thorne, Alexander M. Bailey, Shayn M. Peirce
Combining experiments with multi-cell agent-based modeling to study biological tissue patterning. Briefings Bioinform. 8 (4) (2007)
Scott H. Robertson, Chris K. Smith, Anna L. Langhans, Sara E. McLinden, Matthew A. Oberhardt, Karoly R. Jakab, Bette Dzamba, Douglas W. DeSimone, Jason A. Papin, Shayn M. Peirce
Multiscale computational analysis of Xenopus laevis morphogenesis reveals key insights of systems-level behavior. BMC Syst. Biol. 1 (2007)
Shayn M. Peirce, Thomas C. Skalak, Jason A. Papin
Multiscale biosystems integration: Coupling intracellular network analysis with tissue-patterning simulations. IBM J. Res. Dev. 50 (6) (2006)