William Poole

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 10

Top Topics

Boltzmann Machine

Chemical Reaction

Gene Expression

Top Venues

PLoS Comput. Biol.

Publications

Chaitra Agrahar, William Poole, Simone Bianco, Hana El-Samad
Pathspace Kalman Filters with Dynamic Process Uncertainty for Analyzing Time-course Data. CoRR (2024)
William Poole, Thomas E. Ouldridge, Manoj Gopalkrishnan
Autonomous Learning of Generative Models with Chemical Reaction Network Ensembles. CoRR (2023)
Ayush Pandey, William Poole, Anandh Swaminathan, Victoria Hsiao, Richard M. Murray
Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape. J. Open Source Softw. 8 (83) (2023)
Eran Agmon, Ryan K. Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison, Markus W. Covert
Vivarium: an interface and engine for integrative multiscale modeling in computational biology. Bioinform. 38 (7) (2022)
William Poole, Thomas E. Ouldridge, Manoj Gopalkrishnan, Erik Winfree
Detailed Balanced Chemical Reaction Networks as Generalized Boltzmann Machines. CoRR (2022)
William Poole, Ayush Pandey, Andrey Shur, Zoltán A. Tuza, Richard M. Murray
BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts. PLoS Comput. Biol. 18 (4) (2022)
William Poole
In vitro convolutional neural networks. Nat. Mach. Intell. 4 (7) (2022)
William Poole, Andrés Ortiz-Muñoz, Abhishek Behera, Nick S. Jones, Thomas E. Ouldridge, Erik Winfree, Manoj Gopalkrishnan
Chemical Boltzmann Machines. DNA (2017)
William Poole, Kalle Leinonen, Ilya Shmulevich, Theo A. Knijnenburg, Brady Bernard
Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression. PLoS Comput. Biol. 13 (2) (2017)
William Poole, David L. Gibbs, Ilya Shmulevich, Brady Bernard, Theo A. Knijnenburg
values with an empirical adaptation of Brown's method. Bioinform. 32 (17) (2016)
David Joslin, William Poole
Agent-based simulation for software project planning. WSC (2005)