Thomas E. Ouldridge

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 9

Top Topics

Information Propagation

Conditional Random Fields

Boltzmann Machines

Generative Model

Top Venues

Publications

Benjamin Qureshi, Jenny M. Poulton, Thomas E. Ouldridge
Information propagation in far-from-equilibrium molecular templating networks is optimised by pseudo-equilibrium systems with negligible dissipation. CoRR (2024)
William Poole, Thomas E. Ouldridge, Manoj Gopalkrishnan
Autonomous Learning of Generative Models with Chemical Reaction Network Ensembles. CoRR (2023)
David H. Wolpert, Jan Korbel, Christopher Lynn, Farita Tasnim, Joshua A. Grochow, Gülce Kardes, James B. Aimone, Vijay Balasubramanian, Eric De Giuli, David Doty, Nahuel Freitas, Matteo Marsili, Thomas E. Ouldridge, Andréa W. Richa, Paul M. Riechers, Édgar Roldán, Brenda M. Rubenstein, Zoltán Toroczkai, Joseph A. Paradiso
Is stochastic thermodynamics the key to understanding the energy costs of computation? CoRR (2023)
William Poole, Thomas E. Ouldridge, Manoj Gopalkrishnan, Erik Winfree
Detailed Balanced Chemical Reaction Networks as Generalized Boltzmann Machines. CoRR (2022)
Ian Seet, Thomas E. Ouldridge, Jonathan P. K. Doye
Simulation of reversible molecular mechanical logic gates and circuits. CoRR (2022)
Antti Lankinen, Ismael Mullor Ruiz, Thomas E. Ouldridge
Implementing Non-Equilibrium Networks with Active Circuits of Duplex Catalysts. DNA (2020)
Abhishek Deshpande, Thomas E. Ouldridge
Optimizing enzymatic catalysts for rapid turnover of substrates with low enzyme sequestration. Biol. Cybern. 114 (6) (2020)
Thomas E. Ouldridge
The importance of thermodynamics for molecular systems, and the importance of molecular systems for thermodynamics. Nat. Comput. 17 (1) (2018)
William Poole, Andrés Ortiz-Muñoz, Abhishek Behera, Nick S. Jones, Thomas E. Ouldridge, Erik Winfree, Manoj Gopalkrishnan
Chemical Boltzmann Machines. DNA (2017)
Petr Sulc, Thomas E. Ouldridge, Flavio Romano, Jonathan P. K. Doye, Ard A. Louis
Simulating a burnt-bridges DNA motor with a coarse-grained DNA model. Nat. Comput. 13 (4) (2014)