George M. Church

Publication Activity (10 Years)

Years Active: 1999-2022
Publications (10 Years): 8

Top Topics

Protein Sequences

Neighboring Pixels

Forward Error Correction

Top Venues

Nat. Comput. Sci.

Nucleic Acids Res.

Publications

Zhi Ping, Shihong Chen, Guangyu Zhou, Xiaoluo Huang, Sha Joe Zhu, Haoling Zhang, Henry H. Lee, Zhaojun Lan, Jie Cui, Tai Chen, Wenwei Zhang, Huanming Yang, Xun Xu, George M. Church, Yue Shen
Towards practical and robust DNA-based data archiving using the yin-yang codec system. Nat. Comput. Sci. 2 (4) (2022)
Dennis Grishin, Jean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Kamal Obbad, Kevin Quinn, Mickaël Misbach, Jared Gollhardt, João Sá Sousa, Jacques Fellay, George M. Church, Jean-Pierre Hubaux
Citizen-centered, auditable and privacy-preserving population genomics. Nat. Comput. Sci. 1 (3) (2021)
Jorge A. Marchand, Merrick D. Pierson smela, Thomas H. H. Jordan, Kamesh Narasimhan, George M. Church
TBDB: a database of structurally annotated T-box riboswitch: tRNA pairs. Nucleic Acids Res. 49 (Database-Issue) (2021)
Shilpa Garg, John Aach, Heng Li, Isaac Sebenius, Richard Durbin, George M. Church
A haplotype-aware de novo assembly of related individuals using pedigree sequence graph. Bioinform. 36 (8) (2020)
Mirkó Palla, David B. Thompson, George M. Church
Single-Molecule Characterization of a Nanopore-Coupled Cas9 Protein on an Electrode Array. IEEE SENSORS (2018)
Sam Sinai, Eric D. Kelsic, George M. Church, Martin A. Nowak
Variational auto-encoding of protein sequences. CoRR (2017)
Thaddeus Cybulski, Edward S. Boyden, George M. Church, Keith E. J. Tyo, Konrad P. Körding
Nucleotide-time alignment for molecular recorders. PLoS Comput. Biol. 13 (5) (2017)
Meinolf Blawat, Klaus Gaedke, Ingo Huetter, Xiao-Ming Chen, Brian Turczyk, Samuel Inverso, Benjamin Pruitt, George M. Church
Forward Error Correction for DNA Data Storage. ICCS (2016)
Joshua I. Glaser, Bradley M. Zamft, George M. Church, Konrad P. Körding
Puzzle Imaging: Using Large-scale Dimensionality Reduction Algorithms for Localization. CoRR (2015)
Daniel J. Mandell, Marc J. Lajoie, Michael T. Mee, Ryo Takeuchi, Gleb Kuznetsov, Julie E. Norville, Christopher J. Gregg, Barry L. Stoddard, George M. Church
Biocontainment of genetically modified organisms by synthetic protein design. Nat. 518 (7537) (2015)
Daniel J. Mandell, Marc J. Lajoie, Michael T. Mee, Ryo Takeuchi, Gleb Kuznetsov, Julie E. Norville, Christopher J. Gregg, Barry L. Stoddard, George M. Church
Corrigendum: Biocontainment of genetically modified organisms by synthetic protein design. Nat. 527 (7577) (2015)
Tessa G. Montague, José M. Cruz, James A. Gagnon, George M. Church, Eivind Valen
CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Thaddeus Cybulski, Joshua I. Glaser, Adam Henry Marblestone, Bradley M. Zamft, Edward S. Boyden III, George M. Church, Konrad P. Körding
Spatial information in large-scale neural recordings. Frontiers Comput. Neurosci. 8 (2014)
Michael Keane, Thomas Craig, Jessica Alföldi, Aaron M. Berlin, Jeremy Johnson, Andrei Seluanov, Vera Gorbunova, Federica Di Palma, Kerstin Lindblad-Toh, George M. Church, João Pedro de Magalhães
The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations. Bioinform. 30 (24) (2014)
Marc Güell, Luhan Yang, George M. Church
Genome editing assessment using CRISPR Genome Analyzer (CRISPR-GA). Bioinform. 30 (20) (2014)
Joshua I. Glaser, Bradley M. Zamft, Adam H. Marblestone, Jeffrey R. Moffitt, Keith E. J. Tyo, Edward S. Boyden III, George M. Church, Konrad P. Körding
Statistical Analysis of Molecular Signal Recording. PLoS Comput. Biol. 9 (7) (2013)
Adam H. Marblestone, Bradley M. Zamft, Yael Maguire, Mikhail G. Shapiro, Thaddeus Cybulski, Joshua I. Glaser, Dario Amodei, P. Benjamin Stranges, Reza Kalhor, David Dalrymple, Dongjin Seo, Elad Alon, Michel M. Maharbiz, Jose M. Carmena, Jan M. Rabaey, Edward S. Boyden III, George M. Church, Konrad P. Körding
Physical principles for scalable neural recording. Frontiers Comput. Neurosci. 7 (2013)
Graham Rockwell, Nicholas J. Guido, George M. Church
Redirector: Designing Cell Factories by Reconstructing the Metabolic Objective. PLoS Comput. Biol. 9 (1) (2013)
João Pedro de Magalhães, João Curado, George M. Church
Meta-analysis of age-related gene expression profiles identifies common signatures of aging. Bioinform. 25 (7) (2009)
Shawn M. Douglas, Hendrik Dietz, Tim Liedl, Björn Högberg, Franziska Graf, Adam H. Marblestone, Surat Teerapittayanon, Alejandro Vazquez, George M. Church, William M. Shih
Design and self-assembly of DNA into nanoscale 3D shapes. SIGGRAPH Talks (2009)
Alexander Wait Zaranek, Tom Clegg, Ward Vandewege, George M. Church
Free Factories: Unified Infrastructure for Data Intensive Web Services. USENIX Annual Technical Conference (2008)
Peter V. Kharchenko, Lifeng Chen, Yoav Freund, Dennis Vitkup, George M. Church
Identifying metabolic enzymes with multiple types of association evidence. BMC Bioinform. 7 (2006)
Yuan Gao, George M. Church
Improving molecular cancer class discovery through sparse non-negative matrix factorization. Bioinform. 21 (21) (2005)
Peter V. Kharchenko, Dennis Vitkup, George M. Church
Filling gaps in a metabolic network using expression information. ISMB/ECCB (Supplement of Bioinformatics) (2004)
Patrik D'haeseleer, George M. Church
Estimating and Improving Protein Interaction Error Rates. CSB (2004)
André Catic, Cal T. Collins, George M. Church, Hidde L. Ploegh
Preferred in vivo ubiquitination sites. Bioinform. 20 (18) (2004)
Gaëlle Lelandais, Stéphane Le Crom, Frédéric Devaux, Stéphane Vialette, George M. Church, Claude Jacq, Philippe Marc
yMGV: a cross-species expression data mining tool. Nucleic Acids Res. 32 (Database-Issue) (2004)
Yonatan H. Grad, Frederick P. Roth, Marc S. Halfon, George M. Church
Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura. Bioinform. 20 (16) (2004)
Oliver D. King, Jeffrey C. Lee, Aimée M. Dudley, Daniel M. Janse, George M. Church, Frederick P. Roth
Predicting phenotype from patterns of annotation. ISMB (Supplement of Bioinformatics) (2003)
Abigail Manson McGuire, George M. Church
Discovery of DNA Regulatory Motifs. Gene Regulations and Metabolism (2002)
Martin Steffen, Allegra Petti, John Aach, Patrik D'haeseleer, George M. Church
Automated modelling of signal transduction networks. BMC Bioinform. 3 (2002)
John Aach, George M. Church
Aligning gene expression time series with time warping algorithms. Bioinform. 17 (6) (2001)
George M. Church
Hunger for new technologies, metrics, and spatiotemporal models in functional genomic (abstract only). RECOMB (2001)
Ting Chen, Jacob D. Jaffe, George M. Church
Algorithms for identifying protein cross-links via tandem mass spectrometry. RECOMB (2001)
Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church
A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry. J. Comput. Biol. 8 (3) (2001)
Ting Chen, Jacob D. Jaffe, George M. Church
Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry. J. Comput. Biol. 8 (6) (2001)
Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church
A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry CoRR (2001)
Neema Jamshidi, Jeremy S. Edwards, Tom Fahland, George M. Church, Bernhard O. Palsson
Dynamic simulation of the human red blood cell metabolic network. Bioinform. 17 (3) (2001)
Yizong Cheng, George M. Church
Biclustering of Expression Data. ISMB (2000)
Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong Park
Fast assignment of protein structures to sequences using the Intermediate Sequence Library PDB-ISL. Bioinform. 16 (2) (2000)
Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong Park
PDB_ISL: an intermediate sequence library for protein structure assignment. RECOMB (2000)
Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church
A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry. SODA (2000)
Ting Chen, Hongyu L. He, George M. Church
Modeling Gene Expression with Differential Equations. Pacific Symposium on Biocomputing (1999)