Songnian Hu

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 19

Top Topics

Phylogenetic Trees

Advances In Data Mining

Top Venues

Genom. Proteom. Bioinform.

Nucleic Acids Res.

J. Comput. Biol.

Publications

Tao Yu, Yingfeng Luo, Xinyu Tan, Dahe Zhao, Xiaochun Bi, Chenji Li, Yanning Zheng, Hua Xiang, Songnian Hu
Global Marine Cold Seep Metagenomes Reveal Diversity of Taxonomy, Metabolic Function, and Natural Products. Genom. Proteom. Bioinform. 22 (1) (2024)
Zhang Zhang, Songnian Hu, Jun Yu
Toward a New Paradigm of Genomics Research - Celebration of the 20th Anniversary of Beijing Institute of Genomics. Genom. Proteom. Bioinform. 21 (5) (2023)
Qinglan Sun, Chang Shu, Wenyu Shi, Yingfeng Luo, Guomei Fan, Jingyi Nie, Yuhai Bi, Qihui Wang, Jianxun Qi, Jian Lu, Yuanchun Zhou, Zhihong Shen, Zhen Meng, Xinjiao Zhang, Zhengfei Yu, Shenghan Gao, Linhuan Wu, Juncai Ma, Songnian Hu
VarEPS: an evaluation and prewarning system of known and virtual variations of SARS-CoV-2 genomes. Nucleic Acids Res. 50 (D1) (2022)
Yue Xie, Sen Wang, Shuangyang Wu, Shenghan Gao, Qingshu Meng, Chengdong Wang, Jingchao Lan, Li Luo, Xuan Zhou, Jing Xu, Xiaobin Gu, Ran He, Zijiang Yang, Xuerong Peng, Songnian Hu, Guangyou Yang
Genome of the Giant Panda Roundworm Illuminates Its Host Shift and Parasitic Adaptation. Genom. Proteom. Bioinform. 20 (2) (2022)
Na L. Gao, Zilong He, Qianhui Zhu, Puzi Jiang, Songnian Hu, Wei-Hua Chen
Selection for Cheaper Amino Acids Drives Nucleotide Usage at the Start of Translation in Eukaryotic Genes. Genom. Proteom. Bioinform. 19 (6) (2021)
Jian Sang, Dong Zou, Zhennan Wang, Fan Wang, Yuansheng Zhang, Lin Xia, Zhaohua Li, Lina Ma, Mengwei Li, Bingxiang Xu, Xiaonan Liu, Shuangyang Wu, Lin Liu, Guangyi Niu, Man Li, Yingfeng Luo, Songnian Hu, Lili Hao, Zhang Zhang
IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data. Genom. Proteom. Bioinform. 18 (2) (2020)
Yuan Liang, Dengxue Lu, Sen Wang, Yuhui Zhao, Shenghan Gao, Rongbing Han, Jun Yu, Weili Zheng, Jianing Geng, Songnian Hu
. Genom. Proteom. Bioinform. 18 (3) (2020)
Man Li, Lin Xia, Yuansheng Zhang, Guangyi Niu, Mengwei Li, Pei Wang, Yang Zhang, Jian Sang, Dong Zou, Songnian Hu, Lili Hao, Zhang Zhang
Plant editosome database: a curated database of RNA editosome in plants. Nucleic Acids Res. 47 (Database-Issue) (2019)
Balakrishnan Subramanian, Shenghan Gao, Martin J. Lercher, Songnian Hu, Wei-Hua Chen
Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Guangyi Niu, Dong Zou, Mengwei Li, Yuansheng Zhang, Jian Sang, Lin Xia, Man Li, Lin Liu, Jiabao Cao, Yang Zhang, Pei Wang, Songnian Hu, Lili Hao, Zhang Zhang
Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human. Nucleic Acids Res. 47 (Database-Issue) (2019)
Jian Sang, Zhennan Wang, Man Li, Jiabao Cao, Guangyi Niu, Lin Xia, Dong Zou, Fan Wang, Xingjian Xu, Xiaojiao Han, Jinqi Fan, Ye Yang, Wanzhu Zuo, Yang Zhang, Wenming Zhao, Yiming Bao, Jing-Fa Xiao, Songnian Hu, Lili Hao, Zhang Zhang
ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization. Nucleic Acids Res. 46 (Database-Issue) (2018)
Shuhui Song, Dongmei Tian, Zhang Zhang, Songnian Hu, Jun Yu
Rice Genomics: over the Past Two Decades and into the Future. Genom. Proteom. Bioinform. 16 (6) (2018)
Wanfei Liu, Shuangyang Wu, Qiang Lin, Shenghan Gao, Feng Ding, Xiaowei Zhang, Hasan Awad Aljohi, Jun Yu, Songnian Hu
RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes. Genom. Proteom. Bioinform. 16 (5) (2018)
Na L. Gao, Chengwei Zhang, Zhanbing Zhang, Songnian Hu, Martin J. Lercher, Xing-Ming Zhao, Peer Bork, Zhi Liu, Wei-Hua Chen
MVP: a microbe-phage interaction database. Nucleic Acids Res. 46 (Database-Issue) (2018)
Shuangyang Wu, Wanfei Liu, Hasan Awad Aljohi, Sarah A. Alromaih, Ibrahim O. Alanazi, Qiang Lin, Jun Yu, Songnian Hu
REDO: RNA Editing Detection in Plant Organelles Based on Variant Calling Results. J. Comput. Biol. 25 (5) (2018)
Hasan Awad Aljohi, Wanfei Liu, Qiang Lin, Jun Yu, Songnian Hu
ISVASE: identification of sequence variant associated with splicing event using RNA-seq data. BMC Bioinform. 18 (1) (2017)
Lin Yang, Shanshan Zou, Chang Shu, Yan Song, Yongkun Sun, Wen Zhang, Aiping Zhou, Xinghua Yuan, Yi Yang, Songnian Hu
CYP2A6 Polymorphisms Associate with Outcomes of S-1 Plus Oxaliplatin Chemotherapy in Chinese Gastric Cancer Patients. Genom. Proteom. Bioinform. 15 (4) (2017)
Zilong He, Huangkai Zhang, Shenghan Gao, Martin J. Lercher, Wei-Hua Chen, Songnian Hu
Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Xue Liu, Lili Hao, Dayong Li, Lihuang Zhu, Songnian Hu
Long Non-coding RNAs and Their Biological Roles in Plants. Genom. Proteom. Bioinform. 13 (3) (2015)
Zhang Zhang, Jian Sang, Lina Ma, Gang Wu, Hao Wu, Dawei Huang, Dong Zou, Siqi Liu, Ang Li, Lili Hao, Ming Tian, Chao Xu, Xumin Wang, Jiayan Wu, Jing-Fa Xiao, Lin Dai, Ling-Ling Chen, Songnian Hu, Jun Yu
RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Res. 42 (Database-Issue) (2014)
Linlin Pan, Wei Gong, Yuanyuan Zhou, Xiaonuan Li, Jun Yu, Songnian Hu
A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse Ovary. Genom. Proteom. Bioinform. 12 (5) (2014)
Wei Xu, Chengqi Xin, Qiang Lin, Feng Ding, Wei Gong, Yuanyuan Zhou, Jun Yu, Peng Cui, Songnian Hu
Adolescent Mouse Takes on An Active Transcriptomic Expression During Postnatal Cerebral Development. Genom. Proteom. Bioinform. 12 (3) (2014)
Qian Xiong, Yadong Yang, Hai Wang, Jie Li, Shaobin Wang, Yanming Li, Yaran Yang, Kan Cai, Xiuyan Ruan, Jiangwei Yan, Songnian Hu, Xiangdong Fang
Characterization of miRNomes in Acute and Chronic Myeloid Leukemia Cell Lines. Genom. Proteom. Bioinform. 12 (2) (2014)
Jiayan Wu, Jing-Fa Xiao, Zhang Zhang, Xumin Wang, Songnian Hu, Jun Yu
Ribogenomics: the Science and Knowledge of RNA. Genom. Proteom. Bioinform. 12 (2) (2014)
Peng Cui, Feng Ding, Qiang Lin, Lingfang Zhang, Ang Li, Zhang Zhang, Songnian Hu, Jun Yu
Distinct Contributions of Replication and Transcription to Mutation Rate Variation of Human Genomes. Genom. Proteom. Bioinform. 10 (1) (2012)
Lina Ma, Linghu Nie, Jing Liu, Bing Zhang, Shuhui Song, Min Sun, Jin Yang, Yadong Yang, Xiangdong Fang, Songnian Hu, Yongliang Zhao, Jun Yu
An RNA-seq-based Gene Expression Profiling of Radiation-induced Tumorigenic Mammary Epithelial Cells. Genom. Proteom. Bioinform. 10 (6) (2012)
Huangkai Zhang, Shenghan Gao, Martin J. Lercher, Songnian Hu, Wei-Hua Chen
EvolView, an online tool for visualizing, annotating and managing phylogenetic trees. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Hao Wu, Hongzhu Qu, Ning Wan, Zhang Zhang, Songnian Hu, Jun Yu
Strand-biased Gene Distribution in Bacteria Is Related to both Horizontal Gene Transfer and Strand-biased Nucleotide Composition. Genom. Proteom. Bioinform. 10 (4) (2012)
Peng Cui, Qiang Lin, Feng Ding, Songnian Hu, Jun Yu
The Transcript-centric Mutations in Human Genomes. Genom. Proteom. Bioinform. 10 (1) (2012)
Peng Cui, Wanfei Liu, Yuhui Zhao, Qiang Lin, Feng Ding, Chengqi Xin, Jianing Geng, Shuhui Song, Fanglin Sun, Songnian Hu, Jun Yu
The Association Between H3K4me3 and Antisense Transcription. Genom. Proteom. Bioinform. 10 (2) (2012)
Peng Cui, Wanfei Liu, Yuhui Zhao, Qiang Lin, Daoyong Zhang, Feng Ding, Chengqi Xin, Zhang Zhang, Shuhui Song, Fanglin Sun, Jun Yu, Songnian Hu
Comparative Analyses of H3K4 and H3K27 Trimethylations Between the Mouse Cerebrum and Testis. Genom. Proteom. Bioinform. 10 (2) (2012)
Feng Ding, Wuying Chu, Peng Cui, Meng Tao, Ruixue Zhou, Falan Zhao, Songnian Hu, Jianshe Zhang
EST-Based Identification of Genes Expressed in Skeletal Muscle of the Mandarin Fish (Siniperca chuatsi). Genom. Proteom. Bioinform. 9 (1-2) (2011)
Tongwu Zhang, Yingfeng Luo, Kan Liu, Linlin Pan, Bing Zhang, Jun Yu, Songnian Hu
BIGpre: A Quality Assessment Package for Next-Generation Sequencing Data. Genom. Proteom. Bioinform. 9 (6) (2011)
Wenming Zhao, Wanfei Liu, Dongmei Tian, Bixia Tang, Yanqing Wang, Caixia Yu, Rujiao Li, Yunchao Ling, Jiayan Wu, Shuhui Song, Songnian Hu
wapRNA: a web-based application for the processing of RNA sequences. Bioinform. 27 (21) (2011)
Kaifu Chen, Lei Wang, Meng Yang, Jiucheng Liu, Chengqi Xin, Songnian Hu, Jun Yu
Sequence Signatures of Nucleosome Positioning in Caenorhabditis elegans. Genom. Proteom. Bioinform. 8 (2) (2010)
Ximiao He, Shu Tao, Jing Jin, Songnian Hu, Jun Yu
The Most Redundant Sequences in Human CpG Island Library Are Derived from Mitochondrial Genome. Genom. Proteom. Bioinform. 8 (2) (2010)
Lei Wang, Lan Jiang, Songnian Hu, Yejun Wang
Characterization of Evolutionarily Conserved MicroRNAs in Amphioxus. Genom. Proteom. Bioinform. 8 (1) (2010)
Jianing Geng, Kexin Li, Yanming Zhang, Songnian Hu
A Modified Enrichment Method to Construct Microsatellite Library from Plateau Pika Genome (Ochotona curzoniae). Genom. Proteom. Bioinform. 8 (1) (2010)
Wanfei Liu, Dawei Huang, Kan Liu, Songnian Hu, Jun Yu, Gang Gao, Shuhui Song
Discovery, Identification and Comparative Analysis of Non-Specific Lipid Transfer Protein (nsLtp) Family in Solanaceae. Genom. Proteom. Bioinform. 8 (4) (2010)
Yimei Cai, Xiaomin Yu, Songnian Hu, Jun Yu
A Brief Review on the Mechanisms of miRNA Regulation. Genom. Proteom. Bioinform. 7 (4) (2009)
Dapeng Wang, Song Zhang, Fuhong He, Jiang Zhu, Songnian Hu, Jun Yu
How Do Variable Substitution Rates Influence Ka and Ks Calculations? Genom. Proteom. Bioinform. 7 (3) (2009)
Guoqiang Zhang, Lingxia Zhang, Mingcheng Zhang, Linlin Pan, Fengyu Wang, Jun Huang, Guoli Li, Jun Yu, Songnian Hu
Screening and Assessing 11 Mycobacterium tuberculosis Proteins as Potential Serodiagnostical Markers for Discriminating TB Patients from BCG Vaccinees. Genom. Proteom. Bioinform. 7 (3) (2009)
Weiwei Wang, Qibin Luo, Haiyan Guo, Peter Bossier, Gilbert Van Stappen, Patrick Sorgeloos, Naihong Xin, Qishi Sun, Songnian Hu, Jun Yu
Phylogenetic Analysis of Brine Shrimp (Artemia) in China Using DNA Barcoding. Genom. Proteom. Bioinform. 6 (3-4) (2008)