Elena Rivas

Publication Activity (10 Years)

Years Active: 2000-2023
Publications (10 Years): 6

Top Topics

Hepatitis C Virus

Secondary Structure

Sequence Alignment

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Elena Rivas
RNA covariation at helix-level resolution for the identification of evolutionarily conserved RNA structure. PLoS Comput. Biol. 19 (7) (2023)
Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Res. 49 (Database-Issue) (2021)
Elena Rivas
RNA structure prediction using positive and negative evolutionary information. PLoS Comput. Biol. 16 (10) (2020)
Elena Rivas, Jody Clements, Sean R. Eddy
Estimating the power of sequence covariation for detecting conserved RNA structure. Bioinform. 36 (10) (2020)
Ioanna Kalvari, Joanna Argasinska, Natalia Quinones-Olvera, Eric P. Nawrocki, Elena Rivas, Sean R. Eddy, Alex Bateman, Robert D. Finn, Anton I. Petrov
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families. Nucleic Acids Res. 46 (Database-Issue) (2018)
Elena Rivas, Sean R. Eddy
Parameterizing sequence alignment with an explicit evolutionary model. BMC Bioinform. 16 (2015)
Elena Rivas, Sean R. Eddy
Probabilistic Phylogenetic Inference with Insertions and Deletions. PLoS Comput. Biol. 4 (9) (2008)
Elena Rivas
Evolutionary models for insertions and deletions in a probabilistic modeling framework. BMC Bioinform. 6 (2005)
Elena Rivas, Sean R. Eddy
Noncoding RNA gene detection using comparative sequence analysis. BMC Bioinform. 2 (2001)
Elena Rivas, Sean R. Eddy
Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. Bioinform. 16 (7) (2000)
Elena Rivas, Sean R. Eddy
The language of RNA: a formal grammar that includes pseudoknots. Bioinform. 16 (4) (2000)