Jody Clements

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 4

Top Topics

Protein Families

Profile Hidden Markov Models

Top Venues

Nucleic Acids Res.

Frontiers Neuroinformatics

Publications

Jody Clements, Cristian Goina, Philip M. Hubbard, Takashi Kawase, Donald J. Olbris, Hideo Otsuna, Robert Svirskas, Konrad Rokicki
NeuronBridge: an intuitive web application for neuronal morphology search across large data sets. BMC Bioinform. 25 (1) (2024)
Stephen M. Plaza, Jody Clements, Tom Dolafi, Lowell A. Umayam, Nicole N. Neubarth, Louis K. Scheffer, Stuart E. Berg
neuPrint: An open access tool for EM connectomics. Frontiers Neuroinformatics 16 (2022)
Elena Rivas, Jody Clements, Sean R. Eddy
Estimating the power of sequence covariation for detecting conserved RNA structure. Bioinform. 36 (10) (2020)
Robert Hubley, Robert D. Finn, Jody Clements, Sean R. Eddy, Thomas A. Jones, Weidong Bao, Arian F. A. Smit, Travis J. Wheeler
The Dfam database of repetitive DNA families. Nucleic Acids Res. 44 (Database-Issue) (2016)
Robert D. Finn, Jody Clements, William Arndt, Benjamin L. Miller, Travis J. Wheeler, Fabian Schreiber, Alex Bateman, Sean R. Eddy
HMMER web server: 2015 update. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Travis J. Wheeler, Jody Clements, Robert D. Finn
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models. BMC Bioinform. 15 (2014)
Robert D. Finn, Benjamin L. Miller, Jody Clements, Alex Bateman
iPfam: a database of protein family and domain interactions found in the Protein Data Bank. Nucleic Acids Res. 42 (Database-Issue) (2014)
Robert D. Finn, Alex Bateman, Jody Clements, Penelope Coggill, Ruth Y. Eberhardt, Sean R. Eddy, Andreas Heger, Kirstie Hetherington, Liisa Holm, Jaina Mistry, Erik L. L. Sonnhammer, John G. Tate, Marco Punta
Pfam: the protein families database. Nucleic Acids Res. 42 (Database-Issue) (2014)
Travis J. Wheeler, Jody Clements, Sean R. Eddy, Robert Hubley, Thomas A. Jones, Jerzy Jurka, Arian F. A. Smit, Robert D. Finn
Dfam: a database of repetitive DNA based on profile hidden Markov models. Nucleic Acids Res. 41 (Database-Issue) (2013)
Marco Punta, Penny C. Coggill, Ruth Y. Eberhardt, Jaina Mistry, John G. Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman, Robert D. Finn
The Pfam protein families database. Nucleic Acids Res. 40 (Database-Issue) (2012)
Robert D. Finn, Jody Clements, Sean R. Eddy
HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Robert D. Finn, James W. Stalker, David K. Jackson, Eugene Kulesha, Jody Clements, Roger Pettett
ProServer: a simple, extensible Perl DAS server. Bioinform. 23 (12) (2007)