William Arndt

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 6

Top Topics

Massively Parallel

Resource Selection

Fault Tolerance

Top Venues

IPDPS Workshops

Nucleic Acids Res.

Publications

Madan Timalsina, Lisa Gerhardt, Nicholas Tyler, Johannes P. Blaschke, William Arndt
Optimizing Checkpoint-Restart Mechanisms for HPC with DMTCP in Containers at NERSC. CoRR (2024)
Albert Reuther, Nick Brown, William Arndt, Johannes P. Blaschke, Christian Boehme, Antony Chazapis, Bjoern Enders, Robert Henschel, Julian M. Kunkel, Maxime Martinasso
Interactive and Urgent HPC: Challenges and Opportunities. CoRR (2024)
Rafael Ferreira da Silva, Rosa M. Badia, Venkat Bala, Debbie Bard, Peer-Timo Bremer, Ian Buckley, Silvina Caíno-Lores, Kyle Chard, Carole A. Goble, Shantenu Jha, Daniel S. Katz, Daniel Laney, Manish Parashar, Frédéric Suter, Nick Tyler, Thomas D. Uram, Ilkay Altintas, Stefan Andersson, William Arndt, Juan Aznar, Jonathan Bader, Bartosz Balis, Chris Blanton, Kelly Rosa Braghetto, Aharon Brodutch, Paul Brunk, Henri Casanova, Alba Cervera-Lierta, Justin Chigu, Tainã Coleman, Nick Collier, Iacopo Colonnelli, Frederik Coppens, Michael R. Crusoe, Will Cunningham, Bruno de Paula Kinoshita, Paolo Di Tommaso, Charles M. Doutriaux, Matthew Downton, Wael R. Elwasif, Bjoern Enders, Chris Erdmann, Thomas Fahringer, Ludmilla Figueiredo, Rosa Filgueira, Martin Foltin, Anne Fouilloux, Luiz Gadelha, Andy Gallo, Artur García-Sáez, et al.
Workflows Community Summit 2022: A Roadmap Revolution. CoRR (2023)
Deborah Bard, Cory Snavely, Lisa Gerhardt, Jason Lee, Becci Totzke, Katie Antypas, William Arndt, Johannes P. Blaschke, Suren Byna, Ravi Cheema, Shreyas Cholia, Mark R. Day, Bjoern Enders, Aditi Gaur, Annette Greiner, Taylor Groves, Mariam Kiran, Quincey Koziol, Tom Lehman, Kelly Rowland, Chris Samuel, Ashwin Selvarajan, Alex Sim, David Skinner, Laurie Stephey, Rollin C. Thomas, Gabor Torok
The LBNL Superfacility Project Report. CoRR (2022)
William Arndt
Modifying HMMER3 to Run Efficiently on the Cori Supercomputer Using OpenMP Tasking. IPDPS Workshops (2018)
Thorsten Kurth, William Arndt, Taylor Barnes, Brandon Cook, Jack Deslippe, Douglas Doerfler, Brian Friesen, Yun (Helen) He, Tuomas Koskela, Mathieu Lobet, Tareq M. Malas, Leonid Oliker, Andrey Ovsyannikov, Samuel Williams, Woo-Sun Yang, Zhengji Zhao
Analyzing Performance of Selected NESAP Applications on the Cori HPC System. ISC Workshops (2017)
Robert D. Finn, Jody Clements, William Arndt, Benjamin L. Miller, Travis J. Wheeler, Fabian Schreiber, Alex Bateman, Sean R. Eddy
HMMER web server: 2015 update. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
William Arndt, Jijun Tang
Emulating Insertion and Deletion Events in Genome Rearrangement Analysis. BIBM (2011)
William Arndt, Thomas M. Asbury, W. Jim Zheng, Matt Mitman, Jijun Tang
Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome. BIBM Workshops (2011)
Jian Shi, William Arndt, Fei Hu, Jijun Tang
Isolating - a new resampling method for gene order data. CIBCB (2011)
Meng Zhang, William Arndt, Jijun Tang
An Exact Solver for the DCJ Median Problem. Pacific Symposium on Biocomputing (2009)
Krister M. Swenson, William Arndt, Jijun Tang, Bernard M. E. Moret
Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes. APBC (2008)
Meng Zhang, William Arndt, Jijun Tang
A Branch-and-Bound Method for the Multichromosomal Reversal Median Problem. WABI (2008)
William Arndt, Jijun Tang
Improving Reversal Median Computation Using Commuting Reversals and Cycle Information. J. Comput. Biol. 15 (8) (2008)
William Arndt, Jijun Tang
Improving Inversion Median Computation Using Commuting Reversals and Cycle Information. RECOMB-CG (2007)