Thomas D. Uram

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 23

Top Topics

Electron Microscopy

Volume Visualization

High Resolution Images

Top Venues

IPDPS Workshops

Comput. Sci. Eng.

Publications

Khalid Hossain, Riccardo Balin, Corey Adams, Thomas D. Uram, Kalyan Kumaran, Venkatram Vishwanath, Tanima Dey, Subrata Goswami, Janghaeng Lee, Rebecca Ramer, Koichi Yamada
Demonstration of Portable Performance of Scientific Machine Learning on High Performance Computing Systems. SC Workshops (2023)
Rafael Ferreira da Silva, Rosa M. Badia, Venkat Bala, Debbie Bard, Peer-Timo Bremer, Ian Buckley, Silvina Caíno-Lores, Kyle Chard, Carole A. Goble, Shantenu Jha, Daniel S. Katz, Daniel Laney, Manish Parashar, Frédéric Suter, Nick Tyler, Thomas D. Uram, Ilkay Altintas, Stefan Andersson, William Arndt, Juan Aznar, Jonathan Bader, Bartosz Balis, Chris Blanton, Kelly Rosa Braghetto, Aharon Brodutch, Paul Brunk, Henri Casanova, Alba Cervera-Lierta, Justin Chigu, Tainã Coleman, Nick Collier, Iacopo Colonnelli, Frederik Coppens, Michael R. Crusoe, Will Cunningham, Bruno de Paula Kinoshita, Paolo Di Tommaso, Charles M. Doutriaux, Matthew Downton, Wael R. Elwasif, Bjoern Enders, Chris Erdmann, Thomas Fahringer, Ludmilla Figueiredo, Rosa Filgueira, Martin Foltin, Anne Fouilloux, Luiz Gadelha, Andy Gallo, Artur García-Sáez, et al.
Workflows Community Summit 2022: A Roadmap Revolution. CoRR (2023)
Antonio Villarreal, Yadu N. Babuji, Thomas D. Uram, Daniel S. Katz, Kyle Chard, Katrin Heitmann
Extreme Scale Survey Simulation with Python Workflows. e-Science (2021)
Alexander Brace, Michael Salim, Vishal Subbiah, Heng Ma, Murali Emani, Anda Trifan, Austin R. Clyde, Corey Adams, Thomas D. Uram, Hyun Seung Yoo, Andew Hock, Jessica Liu, Venkatram Vishwanath, Arvind Ramanathan
Stream-AI-MD: streaming AI-driven adaptive molecular simulations for heterogeneous computing platforms. PASC (2021)
A. S. Villarreal, Yadu N. Babuji, Thomas D. Uram, Daniel S. Katz, Kyle Chard, Katrin Heitmann
Extreme Scale Survey Simulation with Python Workflows. CoRR (2021)
Donglai Wei, Kisuk Lee, Hanyu Li, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang, Márcia dos Santos, Zudi Lin, Thomas D. Uram, Xueying Wang, Ignacio Arganda-Carreras, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister
AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions. CoRR (2021)
Michael Salim, Thomas D. Uram, J. Taylor Childers, Venkat Vishwanath, Michael E. Papka
Toward Real-time Analysis of Experimental Science Workloads on Geographically Distributed Supercomputers. CoRR (2021)
Aymen Al-Saadi, Dong H. Ahn, Yadu N. Babuji, Kyle Chard, James Corbett, Mihael Hategan, Stephen Herbein, Shantenu Jha, Daniel Laney, André Merzky, Todd S. Munson, Michael Salim, Mikhail Titov, Matteo Turilli, Thomas D. Uram, Justin M. Wozniak
ExaWorks: Workflows for Exascale. WORKS (2021)
Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Dan Laney, Dong H. Ahn, Shantenu Jha, Carole A. Goble, Lavanya Ramakrishnan, J. Luc Peterson, Bjoern Enders, Douglas Thain, Ilkay Altintas, Yadu N. Babuji, Rosa M. Badia, Vivien Bonazzi, Tainã Coleman, Michael R. Crusoe, Ewa Deelman, Frank Di Natale, Paolo Di Tommaso, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Alex Ganose, Björn A. Grüning, Daniel S. Katz, Olga Kuchar, Ana Kupresanin, Bertram Ludäscher, Ketan Maheshwari, Marta Mattoso, Kshitij Mehta, Todd S. Munson, Jonathan Ozik, Tom Peterka, Loic Pottier, Tim Randles, Stian Soiland-Reyes, Benjamín Tovar, Matteo Turilli, Thomas D. Uram, Karan Vahi, Michael Wilde, Matthew Wolf, Justin M. Wozniak
Workflows Community Summit: Bringing the Scientific Workflows Community Together. CoRR (2021)
Donglai Wei, Kisuk Lee, Hanyu Li, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang, Márcia dos Santos, Zudi Lin, Thomas D. Uram, Xueying Wang, Ignacio Arganda-Carreras, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister
AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions. MICCAI (1) (2021)
Katerina B. Antypas, Deborah Bard, Johannes P. Blaschke, Shane Richard Canon, Bjoern Enders, Mallikarjun Arjun Shankar, Suhas Somnath, Dale Stansberry, Thomas D. Uram, Sean R. Wilkinson
Enabling discovery data science through cross-facility workflows. IEEE BigData (2021)
Rafael Vescovi, Hanyu Li, Jeffery Kinnison, Murat Keçeli, Misha Salim, Narayanan Kasthuri, Thomas D. Uram, Nicola J. Ferrier
Toward an Automated HPC Pipeline for Processing Large Scale Electron Microscopy Data. XLOOP@SC (2020)
Rafael Vescovi, Hanyu Li, Jeffery Kinnison, Murat Keçeli, Misha Salim, Narayanan Kasthuri, Thomas D. Uram, Nicola J. Ferrier
Toward an Automated HPC Pipeline for Processing Large Scale Electron Microscopy Data. CoRR (2020)
Wushi Dong, Murat Keçeli, Rafael Vescovi, Hanyu Li, Corey Adams, Thomas D. Uram, Venkatram Vishwanath, Bobby Kasthuri, Nicola J. Ferrier, Peter Littlewood
Scaling Distributed Training of Flood-Filling Networks on HPC Infrastructure for Brain Mapping. CoRR (2019)
Michael A. Salim, Thomas D. Uram, J. Taylor Childers, Venkatram Vishwanath, Michael E. Papka
Balsam: Near Real-Time Experimental Data Analysis on Supercomputers. XLOOP@SC (2019)
Michael A. Salim, Thomas D. Uram, J. Taylor Childers, Prasanna Balaprakash, Venkatram Vishwanath, Michael E. Papka
Balsam: Automated Scheduling and Execution of Dynamic, Data-Intensive HPC Workflows. CoRR (2019)
Wushi Dong, Nicola J. Ferrier, Narayanan Kasthuri, Peter Littlewood, Murat Keçeli, Rafael Vescovi, Hanyu Li, Corey Adams, Elise Jennings, Samuel Flender, Thomas D. Uram, Venkatram Vishwanath
Scaling Distributed Training of Flood-Filling Networks on HPC Infrastructure for Brain Mapping. DLS@SC (2019)
Prasanna Balaprakash, Michael Salim, Thomas D. Uram, Venkat Vishwanath, Stefan M. Wild
DeepHyper: Asynchronous Hyperparameter Search for Deep Neural Networks. HiPC (2018)
Ryan Chard, Ravi K. Madduri, Nicholas T. Karonis, Kyle Chard, Kirk L. Duffin, Caesar E. Ordoñez, Thomas D. Uram, Justin Fleischauer, Ian T. Foster, Michael E. Papka, John Winans
Scalable pCT Image Reconstruction Delivered as a Cloud Service. IEEE Trans. Cloud Comput. 6 (1) (2018)
John T. Childers, Thomas D. Uram, T. J. LeCompte, Michael E. Papka, D. P. Benjamin
Adapting the serial Alpgen parton-interaction generator to simulate LHC collisions on millions of parallel threads. Comput. Phys. Commun. 210 (2017)
Silvio Rizzi, Mark Hereld, Joseph A. Insley, Preeti Malakar, Michael E. Papka, Thomas D. Uram, Venkatram Vishwanath
Coupling LAMMPS and the vl3 Framework for Co-Visualization of Atomistic Simulations. IPDPS Workshops (2016)
Min Shih, Silvio Rizzi, Joseph A. Insley, Thomas D. Uram, Venkatram Vishwanath, Mark Hereld, Michael E. Papka, Kwan-Liu Ma
Parallel distributed, GPU-accelerated, advanced lighting calculations for large-scale volume visualization. LDAV (2016)
Thomas D. Uram, Michael E. Papka
Expanding the Scope of High-Performance Computing Facilities. Comput. Sci. Eng. 18 (3) (2016)
Silvio Rizzi, Mark Hereld, Joseph A. Insley, Michael E. Papka, Thomas D. Uram, Venkatram Vishwanath
Large-Scale Parallel Visualization of Particle-Based Simulations using Point Sprites and Level-Of-Detail. EGPGV@EuroVis (2015)
John T. Childers, Thomas D. Uram, T. J. LeCompte, Michael E. Papka, D. P. Benjamin
Adapting the serial Alpgen event generator to simulate LHC collisions on millions of parallel threads. CoRR (2015)
Jiayuan Meng, Thomas D. Uram, Vitali A. Morozov, Venkatram Vishwanath, Kalyan Kumaran
Modeling Cooperative Threads to Project GPU Performance for Adaptive Parallelism. IPDPS Workshops (2015)
Ravi K. Madduri, Alex Rodriguez, Thomas D. Uram, Katrin Heitmann, Tanu Malik, Saba Sehrish, Ryan Chard, Shreyas Cholia, Marc F. Paterno, Jim Kowalkowski, Salman Habib
PDACS: A Portal for Data Analysis Services for Cosmological Simulations. Comput. Sci. Eng. 17 (5) (2015)
Jie Jiang, Mark Hereld, Joseph A. Insley, Michael E. Papka, Silvio Rizzi, Thomas D. Uram, Venkatram Vishwanath
Streaming ultra high resolution images to large tiled display at nearly interactive frame rate with vl3. LDAV (2015)
Silvio Rizzi, Mark Hereld, Joseph A. Insley, Michael E. Papka, Thomas D. Uram, Venkatram Vishwanath
Large-scale co-visualization for LAMMPS using vl3. LDAV (2015)
Silvio Rizzi, Mark Hereld, Joseph A. Insley, Michael E. Papka, Thomas D. Uram, Venkatram Vishwanath
Performance Modeling of vl3 Volume Rendering on GPU-Based Clusters. EGPGV@EuroVis (2014)
Phil Lindner, Adolfo Rodriguez, Thomas D. Uram, Michael E. Papka
Augmenting views on large format displays with tablets. SUI (2014)
Ryan Chard, Saba Sehrish, Alex Rodriguez, Ravi K. Madduri, Thomas D. Uram, Marc F. Paterno, Katrin Heitmann, Shreyas Cholia, Jim Kowalkowski, Salman Habib
PDACS: a portal for data analysis services for cosmological simulations. GCE@SC (2014)
Nicholas T. Karonis, Kirk L. Duffin, Caesar E. Ordoñez, Béla Erdélyi, Thomas D. Uram, Eric C. Olson, George Coutrakon, Michael E. Papka
Distributed and hardware accelerated computing for clinical medical imaging using proton computed tomography (pCT). J. Parallel Distributed Comput. 73 (12) (2013)
Kirk L. Duffin, Nicholas T. Karonis, Caesar E. Ordoñez, Michael E. Papka, George Coutrakon, Béla Erdélyi, Eric C. Olson, Thomas D. Uram
An Analysis of a Distributed GPU Implementation of Proton Computed Tomographic (pCT) Reconstruction. SC Companion (2012)
Jiayuan Meng, Vitali A. Morozov, Kalyan Kumaran, Venkatram Vishwanath, Thomas D. Uram
GROPHECY: GPU performance projection from CPU code skeletons. SC (2011)
Thomas D. Uram, Michael E. Papka, Mark Hereld, Michael Wilde
A solution looking for lots of problems: generic portals for science infrastructure. TG (2011)
Wenjun Wu, Thomas D. Uram, Michael Wilde, Mark Hereld, Michael E. Papka
Accelerating science gateway development with Web 2.0 and Swift. TG (2010)
Wenjun Wu, Thomas D. Uram, Michael Wilde, Mark Hereld, Michael E. Papka
A Web 2.0-Based Scientific Application Framework. ICWS (2010)
Wenjun Wu, Thomas D. Uram, Michael E. Papka
Web 2.0-based social informatics data grid. SC-GCE (2009)
Namgon Kim, JongWon Kim, Thomas D. Uram
A hybrid multicast connectivity solution for multi-party collaborative environments. Multim. Tools Appl. 44 (1) (2009)
Jim Basney, Stuart Martin, John-Paul Navarro, Marlon E. Pierce, Tom Scavo, Leif Strand, Thomas D. Uram, Nancy Wilkins-Diehr, Wenjun Wu, Choonhan Youn
The Problem Solving Environments of TeraGrid, Science Gateways, and the Intersection of the Two. eScience (2008)
Mark Hereld, Michael E. Papka, Thomas D. Uram
Collaboration as a second thought. CTS (2008)
Han Gao, Ivan R. Judson, Thomas D. Uram, S. Lefvert, Terry Disz, Michael E. Papka, Rick L. Stevens
An Infrastructure of Network Services for Seamless Integration in Advanced Collaborative Computing Environments. CLUSTER (2005)
Han Gao, Ivan R. Judson, Thomas D. Uram, Terry Disz, Michael E. Papka, Rick L. Stevens
Capability matching of data streams with network services. CCGRID (2004)