Jeff Lichtman

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 14

Top Topics

Electron Microscopy

Scale Selection

Vessel Segmentation

Cortical Regions

Top Venues

Publications

Jia Wan, Wanhua Li, Atmadeep Banerjee, Jason Ken Adhinarta, Evelina Sjostedt, Jingpeng Wu, Jeff Lichtman, Hanspeter Pfister, Donglai Wei
TriSAM: Tri-Plane SAM for zero-shot cortical blood vessel segmentation in VEM images. CoRR (2024)
Jiahao Shi, Hongyu Ge, Shuohong Wang, Donglai Wei, Jiancheng Yang, Ao Cheng, Richard Schalek, Jun Guo, Jeff Lichtman, Lirong Wang, Ruobing Zhang
Two-stage error detection to improve electron microscopy image mosaicking. Comput. Biol. Medicine 178 (2024)
Minghao Chen, Mukesh Bangalore Renuka, Lu Mi, Jeff Lichtman, Nir Shavit, Yaron Meirovitch
Learning to Correct Sloppy Annotations in Electron Microscopy Volumes. CVPR Workshops (2023)
Yulun Zhang, Donglai Wei, Richard Schalek, Yuelong Wu, Stephen G. Turney, Jeff Lichtman, Hanspeter Pfister, Yun Fu
High-Throughput Microscopy Image Deblurring with Graph Reasoning Attention Network. ISBI (2023)
Zudi Lin, Donglai Wei, Mariela D. Petkova, Yuelong Wu, Zergham Ahmed, Krishna Swaroop K, Silin Zou, Nils Wendt, Jonathan Boulanger-Weill, Xueying Wang, Nagaraju Dhanyasi, Ignacio Arganda-Carreras, Florian Engert, Jeff Lichtman, Hanspeter Pfister
NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale. CoRR (2021)
Donglai Wei, Kisuk Lee, Hanyu Li, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang, Márcia dos Santos, Zudi Lin, Thomas D. Uram, Xueying Wang, Ignacio Arganda-Carreras, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister
AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions. CoRR (2021)
Zudi Lin, Donglai Wei, Mariela D. Petkova, Yuelong Wu, Zergham Ahmed, Krishna Swaroop K, Silin Zou, Nils Wendt, Jonathan Boulanger-Weill, Xueying Wang, Nagaraju Dhanyasi, Ignacio Arganda-Carreras, Florian Engert, Jeff Lichtman, Hanspeter Pfister
NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale. MICCAI (1) (2021)
Donglai Wei, Kisuk Lee, Hanyu Li, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang, Márcia dos Santos, Zudi Lin, Thomas D. Uram, Xueying Wang, Ignacio Arganda-Carreras, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister
AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions. MICCAI (1) (2021)
Zudi Lin, Donglai Wei, Jeff Lichtman, Hanspeter Pfister
PyTorch Connectomics: A Scalable and Flexible Segmentation Framework for EM Connectomics. CoRR (2021)
Susie Yi Huang, Thomas Witzel, Boris Keil, Alina Scholz, Mathias Davids, Peter Dietz, Elmar Rummert, Rebecca Ramb, John E. Kirsch, Anastasia Yendiki, Qiuyun Fan, Qiyuan Tian, Gabriel Ramos-Llordén, Hong-Hsi Lee, Aapo Nummenmaa, Berkin Bilgic, Kawin Setsompop, Fuyixue Wang, Alexandru Vlad Avram, Michal E. Komlosh, Dan Benjamini, Kulam Najmudeen Magdoom, Sudhir Pathak, Walter Schneider, Dmitry S. Novikov, Els Fieremans, Slimane Tounekti, Choukri Mekkaoui, Jean Augustinack, Daniel R. Berger, Alexander Shapson-Coe, Jeff Lichtman, Peter J. Basser, Lawrence L. Wald, Bruce R. Rosen
Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome. NeuroImage 243 (2021)
Abhimanyu Talwar, Zudi Lin, Donglai Wei, Yuesong Wu, Bowen Zheng, Jinglin Zhao, Won-Dong Jang, Xueying Wang, Jeff Lichtman, Hanspeter Pfister
A Topological Nomenclature for 3D Shape Analysis in Connectomics. CVPR Workshops (2020)
Zudi Lin, Donglai Wei, Won-Dong Jang, Siyan Zhou, Xupeng Chen, Xueying Wang, Richard Schalek, Daniel R. Berger, Brian Matejek, Lee Kamentsky, Adi Suissa-Peleg, Daniel Haehn, Thouis R. Jones, Toufiq Parag, Jeff Lichtman, Hanspeter Pfister
Two Stream Active Query Suggestion for Active Learning in Connectomics. ECCV (18) (2020)
Moritz Helmstaedter, Jeff Lichtman, Nir Shavit
High Throughput Connectomics (Dagstuhl Seminar 18481). Dagstuhl Reports 8 (11) (2018)
Felix Gonda, Verena Kaynig, Thouis Ray Jones, Daniel Haehn, Jeff Lichtman, Toufiq Parag, Hanspeter Pfister
Icon: An Interactive Approach to Train Deep Neural Networks for Segmentation of Neuronal Structures. CoRR (2016)
Verena Kaynig, Amelio Vázquez Reina, Seymour Knowles-Barley, Mike Roberts, Thouis R. Jones, Narayanan Kasthuri, Eric L. Miller, Jeff Lichtman, Hanspeter Pfister
Large-scale automatic reconstruction of neuronal processes from electron microscopy images. Medical Image Anal. 22 (1) (2015)
Michael M. Kazhdan, Randal C. Burns, Bobby Kasthuri, Jeff Lichtman, R. Jacob Vogelstein, Joshua T. Vogelstein
Gradient-Domain Processing for Large EM Image Stacks. CoRR (2013)
Verena Kaynig, Amelio Vázquez Reina, Seymour Knowles-Barley, Mike Roberts, Thouis R. Jones, Narayanan Kasthuri, Eric L. Miller, Jeff Lichtman, Hanspeter Pfister
Large-Scale Automatic Reconstruction of Neuronal Processes from Electron Microscopy Images CoRR (2013)
Randal C. Burns, William R. Gray Roncal, Dean Kleissas, Kunal Lillaney, Priya Manavalan, Eric A. Perlman, Daniel R. Berger, Davi Bock, Kwanghun Chung, Logan Grosenick, Narayanan Kasthuri, Nicholas C. Weiler, Karl Deisseroth, Michael M. Kazhdan, Jeff Lichtman, R. Clay Reid, Stephen J. Smith, Alexander S. Szalay, Joshua T. Vogelstein, R. Jacob Vogelstein
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience. CoRR (2013)
Randal C. Burns, Kunal Lillaney, Daniel R. Berger, Logan Grosenick, Karl Deisseroth, R. Clay Reid, William R. Gray Roncal, Priya Manavalan, Davi Bock, Narayanan Kasthuri, Michael M. Kazhdan, Stephen J. Smith, Dean Kleissas, Eric A. Perlman, Kwanghun Chung, Nicholas C. Weiler, Jeff Lichtman, Alexander S. Szalay, Joshua T. Vogelstein, R. Jacob Vogelstein
The open connectome project data cluster: scalable analysis and vision for high-throughput neuroscience. SSDBM (2013)
Amelio Vázquez Reina, Won-Ki Jeong, Jeff Lichtman, Hanspeter Pfister
The connectome project: discovering the wiring of the brain. XRDS 18 (1) (2011)
Mike Roberts, Won-Ki Jeong, Amelio Vázquez Reina, Markus Unger, Horst Bischof, Jeff Lichtman, Hanspeter Pfister
Neural Process Reconstruction from Sparse User Scribbles. MICCAI (1) (2011)
Johanna Beyer, Markus Hadwiger, Won-Ki Jeong, Hanspeter Pfister, Jeff Lichtman
Demand-driven volume rendering of terascale EM data. SIGGRAPH Talks (2011)
Amelio Vázquez Reina, Michael Gelbart, Daniel Huang, Jeff Lichtman, Eric L. Miller, Hanspeter Pfister
Segmentation fusion for connectomics. ICCV (2011)
Won-Ki Jeong, Johanna Beyer, Markus Hadwiger, Rusty Blue, Charles Law, Amelio Vázquez Reina, R. Clay Reid, Jeff Lichtman, Hanspeter Pfister
Ssecrett and NeuroTrace: Interactive Visualization and Analysis Tools for Large-Scale Neuroscience Data Sets. IEEE Computer Graphics and Applications 30 (3) (2010)
Won-Ki Jeong, Jens Schneider, Stephen G. Turney, Beverly E. Faulkner-Jones, Dominik Meyer, Rüdiger Westermann, R. Clay Reid, Jeff Lichtman, Hanspeter Pfister
Interactive Histology of Large-Scale Biomedical Image Stacks. IEEE Trans. Vis. Comput. Graph. 16 (6) (2010)
Ranga Srinivasan, Qing Li, Xiaobo Zhou, Ju Lu, Jeff Lichtman, Stephen T. C. Wong
Reconstruction of the neuromuscular junction connectome. Bioinform. 26 (12) (2010)
Yong Zhang, Xiaobo Zhou, Ju Lu, Jeff Lichtman, Donald A. Adjeroh, Stephen T. C. Wong
3D Axon Structure Extraction and Analysis in Confocal Fluorescence Microscopy Images. Neural Comput. 20 (8) (2008)
Hongmin Cai, Xiaoyin Xu, Ju Lu, Jeff Lichtman, S. P. Yung, Stephen T. C. Wong
Using nonlinear diffusion and mean shift to detect and connect cross-sections of axons in 3D optical microscopy images. Medical Image Anal. 12 (6) (2008)
Ranga Srinivasan, Xiaobo Zhou, Eric L. Miller, Ju Lu, Jeff Lichtman, Stephen T. C. Wong
3-D Centerline Extraction of Axons in Microscopic Stacks for the Study of Motor Neuron Behavior in Developing Muscles. ISBI (2007)
Jun Wang, Xiaobo Zhou, Ju Lu, Jeff Lichtman, Shih-Fu Chang, Stephen T. C. Wong
Dynamic Local Tracing for 3d Axon Curvilinear Structure Detection from Microscopic Image Stack. ISBI (2007)
Hongmin Cai, Xiaoyin Xu, Ju Lu, Jeff Lichtman, S. P. Yung, Stephen T. C. Wong
Shape-constrained repulsive snake method to segment and track neurons in 3D microscopy images. ISBI (2006)