Narayanan Kasthuri

Publication Activity (10 Years)

Years Active: 2010-2022
Publications (10 Years): 17

Top Topics

Electron Microscopy

Volume Visualization

Top Venues

IEEE Trans. Vis. Comput. Graph.

Publications

Anish A. Sarma, Jing Shuang Lisa Li, Josefin Stenberg, Gwyneth Card, Elizabeth S. Heckscher, Narayanan Kasthuri, Terrence J. Sejnowski, John C. Doyle
Internal Feedback in Biological Control: Architectures and Examples. ACC (2022)
Josefin Stenberg, Jing Shuang Li, Anish A. Sarma, Terrence J. Sejnowski, Gwyneth Card, Elizabeth S. Heckscher, Narayanan Kasthuri, John C. Doyle
Locality, Delays, and Internal Feedback in Sensorimotor Control Part 1: Motivation and Introductory Theory. CoRR (2021)
Scott Trinkle, Sean Foxley, Gregg A. Wildenberg, Narayanan Kasthuri, Patrick La Riviere
The role of spatial embedding in mouse brain networks constructed from diffusion tractography and tracer injections. NeuroImage 244 (2021)
Donglai Wei, Kisuk Lee, Hanyu Li, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang, Márcia dos Santos, Zudi Lin, Thomas D. Uram, Xueying Wang, Ignacio Arganda-Carreras, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister
AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions. CoRR (2021)
Viktor V. Nikitin, Vincent De Andrade, Azat Slyamov, Benjamin J. Gould, Yuepeng Zhang, Vandana Sampathkumar, Narayanan Kasthuri, Doga Gürsoy, Francesco De Carlo
Distributed Optimization for Nonrigid Nano-Tomography. IEEE Trans. Computational Imaging 7 (2021)
Donglai Wei, Kisuk Lee, Hanyu Li, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang, Márcia dos Santos, Zudi Lin, Thomas D. Uram, Xueying Wang, Ignacio Arganda-Carreras, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister
AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions. MICCAI (1) (2021)
Sean Foxley, Vandana Sampathkumar, Vincent De Andrade, Scott Trinkle, Anastasia Sorokina, Katrina Norwood, Patrick La Riviere, Narayanan Kasthuri
Multi-modal imaging of a single mouse brain over five orders of magnitude of resolution. NeuroImage 238 (2021)
Rafael Vescovi, Hanyu Li, Jeffery Kinnison, Murat Keçeli, Misha Salim, Narayanan Kasthuri, Thomas D. Uram, Nicola J. Ferrier
Toward an Automated HPC Pipeline for Processing Large Scale Electron Microscopy Data. XLOOP@SC (2020)
Viktor V. Nikitin, Vincent De Andrade, Azat Slyamov, Benjamin J. Gould, Yuepeng Zhang, Vandana Sampathkumar, Narayanan Kasthuri, Doga Gürsoy, Francesco De Carlo
Distributed optimization for nonrigid nano-tomography. CoRR (2020)
Rafael Vescovi, Hanyu Li, Jeffery Kinnison, Murat Keçeli, Misha Salim, Narayanan Kasthuri, Thomas D. Uram, Nicola J. Ferrier
Toward an Automated HPC Pipeline for Processing Large Scale Electron Microscopy Data. CoRR (2020)
Wushi Dong, Nicola J. Ferrier, Narayanan Kasthuri, Peter Littlewood, Murat Keçeli, Rafael Vescovi, Hanyu Li, Corey Adams, Elise Jennings, Samuel Flender, Thomas D. Uram, Venkatram Vishwanath
Scaling Distributed Training of Flood-Filling Networks on HPC Infrastructure for Brain Mapping. DLS@SC (2019)
Ryan Chard, Rafael Vescovi, Ming Du, Hanyu Li, Kyle Chard, Steven Tuecke, Narayanan Kasthuri, Ian T. Foster
High-Throughput Neuroanatomy and Trigger-Action Programming: A Case Study in Research Automation. AI-Science@HPDC (2018)
Kristofer E. Bouchard, James B. Aimone, Miyoung Chun, Thomas Dean, Michael Denker, Markus Diesmann, David Donofrio, Loren M. Frank, Narayanan Kasthuri, Christof Koch, Oliver Rübel, Horst D. Simon, Friedrich T. Sommer, Prabhat
International Neuroscience Initiatives through the Lens of High-Performance Computing. Computer 51 (4) (2018)
Seymour Knowles-Barley, Verena Kaynig, Thouis Ray Jones, Alyssa Wilson, Joshua Morgan, Dongil Lee, Daniel R. Berger, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister
RhoanaNet Pipeline: Dense Automatic Neural Annotation. CoRR (2016)
Ali K. Al-Awami, Johanna Beyer, Daniel Haehn, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister, Markus Hadwiger
NeuroBlocks - Visual Tracking of Segmentation and Proofreading for Large Connectomics Projects. IEEE Trans. Vis. Comput. Graph. 22 (1) (2016)
Eva L. Dyer, William R. Gray Roncal, Hugo L. Fernandes, Doga Gürsoy, Xianghui Xiao, Joshua T. Vogelstein, Chris Jacobsen, Konrad P. Körding, Narayanan Kasthuri
Quantifying mesoscale neuroanatomy using X-ray microtomography. CoRR (2016)
William R. Gray Roncal, Eva L. Dyer, Doga Gürsoy, Konrad P. Körding, Narayanan Kasthuri
From sample to knowledge: Towards an integrated approach for neuroscience discovery. CoRR (2016)
Verena Kaynig, Amelio Vázquez Reina, Seymour Knowles-Barley, Mike Roberts, Thouis R. Jones, Narayanan Kasthuri, Eric L. Miller, Jeff Lichtman, Hanspeter Pfister
Large-scale automatic reconstruction of neuronal processes from electron microscopy images. Medical Image Anal. 22 (1) (2015)
Ayushi Sinha, William R. Gray Roncal, Narayanan Kasthuri, Ming Chuang, Priya Manavalan, Dean Kleissas, Joshua T. Vogelstein, R. Jacob Vogelstein, Randal C. Burns, Jeff W. Lichtman, Michael M. Kazhdan
Automatic Annotation of Axoplasmic Reticula in Pursuit of Connectomes. CoRR (2014)
William R. Gray Roncal, Verena Kaynig-Fittkau, Narayanan Kasthuri, Daniel R. Berger, Joshua T. Vogelstein, Lindsey R. Fernandez, Jeff W. Lichtman, R. Jacob Vogelstein, Hanspeter Pfister, Gregory D. Hager
Volumetric Exploitation of Synaptic Information using Context Localization and Evaluation. CoRR (2014)
Ayushi Sinha, William R. Gray Roncal, Narayanan Kasthuri, Jeff W. Lichtman, Randal C. Burns, Michael M. Kazhdan
Automatic Annotation of Axoplasmic Reticula in Pursuit of Connectomes using High-Resolution Neural EM Data. CoRR (2014)
Daniel Haehn, Seymour Knowles-Barley, Mike Roberts, Johanna Beyer, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister
Design and Evaluation of Interactive Proofreading Tools for Connectomics. IEEE Trans. Vis. Comput. Graph. 20 (12) (2014)
Ali K. Al-Awami, Johanna Beyer, Hendrik Strobelt, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister, Markus Hadwiger
NeuroLines: A Subway Map Metaphor for Visualizing Nanoscale Neuronal Connectivity. IEEE Trans. Vis. Comput. Graph. 20 (12) (2014)
Verena Kaynig, Amelio Vázquez Reina, Seymour Knowles-Barley, Mike Roberts, Thouis R. Jones, Narayanan Kasthuri, Eric L. Miller, Jeff Lichtman, Hanspeter Pfister
Large-Scale Automatic Reconstruction of Neuronal Processes from Electron Microscopy Images CoRR (2013)
Randal C. Burns, William R. Gray Roncal, Dean Kleissas, Kunal Lillaney, Priya Manavalan, Eric A. Perlman, Daniel R. Berger, Davi Bock, Kwanghun Chung, Logan Grosenick, Narayanan Kasthuri, Nicholas C. Weiler, Karl Deisseroth, Michael M. Kazhdan, Jeff Lichtman, R. Clay Reid, Stephen J. Smith, Alexander S. Szalay, Joshua T. Vogelstein, R. Jacob Vogelstein
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience. CoRR (2013)
Johanna Beyer, Markus Hadwiger, Ali K. Al-Awami, Won-Ki Jeong, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister
Exploring the Connectome: Petascale Volume Visualization of Microscopy Data Streams. IEEE Computer Graphics and Applications 33 (4) (2013)
Johanna Beyer, Ali K. Al-Awami, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister, Markus Hadwiger
ConnectomeExplorer: Query-Guided Visual Analysis of Large Volumetric Neuroscience Data. IEEE Trans. Vis. Comput. Graph. 19 (12) (2013)
Randal C. Burns, Kunal Lillaney, Daniel R. Berger, Logan Grosenick, Karl Deisseroth, R. Clay Reid, William R. Gray Roncal, Priya Manavalan, Davi Bock, Narayanan Kasthuri, Michael M. Kazhdan, Stephen J. Smith, Dean Kleissas, Eric A. Perlman, Kwanghun Chung, Nicholas C. Weiler, Jeff Lichtman, Alexander S. Szalay, Joshua T. Vogelstein, R. Jacob Vogelstein
The open connectome project data cluster: scalable analysis and vision for high-throughput neuroscience. SSDBM (2013)
Viren Jain, Benjamin Bollmann, Mark Richardson, Daniel R. Berger, Moritz Helmstaedter, Kevin L. Briggman, Winfried Denk, Jared B. Bowden, John M. Mendenhall, Wickliffe C. Abraham, Kristen M. Harris, Narayanan Kasthuri, Ken J. Hayworth, Richard Schalek, Juan Carlos Tapia, Jeff W. Lichtman, H. Sebastian Seung
Boundary Learning by Optimization with Topological Constraints. CVPR (2010)