Jeff W. Lichtman

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 23

Top Topics

Electron Microscopy

Automatic Annotation

Interactive Visual

Top Venues

IEEE Trans. Vis. Comput. Graph.

Publications

Shixuan Gu, Jason Ken Adhinarta, Mikhail Bessmeltsev, Jiancheng Yang, Jessica Zhang, Daniel R. Berger, Jeff W. Lichtman, Hanspeter Pfister, Donglai Wei
FreSeg: Frenet-Frame-based Part Segmentation for 3D Curvilinear Structures. CoRR (2024)
Jakob Troidl, Simon Warchol, Jinhan Choi, Jordan Matelsky, Nagaraju Dhanyasi, Xueying Wang, Brock A. Wester, Donglai Wei, Jeff W. Lichtman, Hanspeter Pfister, Johanna Beyer
- Visual Analysis of Neuronal Connectivity Motifs. IEEE Trans. Vis. Comput. Graph. 30 (1) (2024)
Morgan Sanchez, Dymon Moore, Erik C. Johnson, Brock A. Wester, Jeff W. Lichtman, William R. Gray Roncal
Connectomics Annotation Metadata Standardization for Increased Accessibility and Queryability. Frontiers Neuroinformatics 16 (2022)
Brian Matejek, Tim Franzmeyer, Donglai Wei, Xueying Wang, Jinglin Zhao, Kálmán Palágyi, Jeff W. Lichtman, Hanspeter Pfister
Scalable Biologically-Aware Skeleton Generation for Connectomic Volumes. IEEE Trans. Medical Imaging 41 (9) (2022)
Felix Gonda, Xueying Wang, Johanna Beyer, Markus Hadwiger, Jeff W. Lichtman, Hanspeter Pfister
VICE: Visual Identification and Correction of Neural Circuit Errors. CoRR (2021)
Lu Mi, Hao Wang, Yaron Meirovitch, Richard Schalek, Srinivas C. Turaga, Jeff W. Lichtman, Aravinthan D. T. Samuel, Nir Shavit
Learning Guided Electron Microscopy with Active Acquisition. CoRR (2021)
Felix Gonda, Xueying Wang, Johanna Beyer, Markus Hadwiger, Jeff W. Lichtman, Hanspeter Pfister
VICE: Visual Identification and Correction of Neural Circuit Errors. Comput. Graph. Forum 40 (3) (2021)
Lu Mi, Hao Wang, Yaron Meirovitch, Richard Schalek, Srinivas C. Turaga, Jeff W. Lichtman, Aravinthan D. T. Samuel, Nir Shavit
Learning Guided Electron Microscopy with Active Acquisition. MICCAI (5) (2020)
Donglai Wei, Zudi Lin, Daniel Franco-Barranco, Nils Wendt, Xingyu Liu, Wenjie Yin, Xin Huang, Aarush Gupta, Won-Dong Jang, Xueying Wang, Ignacio Arganda-Carreras, Jeff W. Lichtman, Hanspeter Pfister
MitoEM Dataset: Large-Scale 3D Mitochondria Instance Segmentation from EM Images. MICCAI (5) (2020)
Douglas H. Roossien, Benjamin V. Sadis, Yan Yan, John M. Webb, Lia Y. Min, Aslan S. Dizaji, Luke J. Bogart, Cristina Mazuski, Robert S. Huth, Johanna S. Stecher, Sriakhila Akula, Fred Y. Shen, Ye Li, Tingxin Xiao, Madeleine Vandenbrink, Jeff W. Lichtman, Takao K. Hensch, Erik D. Herzog, Dawen Cai
Multispectral tracing in densely labeled mouse brain with nTracer. Bioinform. 35 (18) (2019)
Abhimanyu Talwar, Zudi Lin, Donglai Wei, Yuesong Wu, Bowen Zheng, Jinglin Zhao, Won-Dong Jang, Xueying Wang, Jeff W. Lichtman, Hanspeter Pfister
A Topological Nomenclature for 3D Shape Analysis in Connectomics. CoRR (2019)
Daniel Haehn, Verena Kaynig, James Tompkin, Jeff W. Lichtman, Hanspeter Pfister
Guided Proofreading of Automatic Segmentations for Connectomics. CVPR (2018)
Toufiq Parag, Daniel R. Berger, Lee Kamentsky, Benedikt Staffler, Donglai Wei, Moritz Helmstaedter, Jeff W. Lichtman, Hanspeter Pfister
Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets. ECCV Workshops (6) (2018)
Toufiq Parag, Daniel R. Berger, Lee Kamentsky, Benedikt Staffler, Donglai Wei, Moritz Helmstaedter, Jeff W. Lichtman, Hanspeter Pfister
Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets. CoRR (2018)
Felix Gonda, Verena Kaynig, Thouis R. Jones, Daniel Haehn, Jeff W. Lichtman, Toufiq Parag, Hanspeter Pfister
ICON: An interactive approach to train deep neural networks for segmentation of neuronal structures. ISBI (2017)
Daniel Haehn, Verena Kaynig, James Tompkin, Jeff W. Lichtman, Hanspeter Pfister
Guided Proofreading of Automatic Segmentations for Connectomics. CoRR (2017)
Toufiq Parag, Fabian Tschopp, William Grisaitis, Srinivas C. Turaga, Xuewen Zhang, Brian Matejek, Lee Kamentsky, Jeff W. Lichtman, Hanspeter Pfister
Anisotropic EM Segmentation by 3D Affinity Learning and Agglomeration. CoRR (2017)
Daniel Haehn, John Hoffer, Brian Matejek, Adi Suissa-Peleg, Ali K. Al-Awami, Lee Kamentsky, Felix Gonda, Eagon Meng, William Zhang, Richard Schalek, Alyssa Wilson, Toufiq Parag, Johanna Beyer, Verena Kaynig, Thouis R. Jones, James Tompkin, Markus Hadwiger, Jeff W. Lichtman, Hanspeter Pfister
Scalable Interactive Visualization for Connectomics. Informatics 4 (3) (2017)
David Rolnick, Yaron Meirovitch, Toufiq Parag, Hanspeter Pfister, Viren Jain, Jeff W. Lichtman, Edward S. Boyden, Nir Shavit
Morphological Error Detection in 3D Segmentations. CoRR (2017)
Seymour Knowles-Barley, Verena Kaynig, Thouis Ray Jones, Alyssa Wilson, Joshua Morgan, Dongil Lee, Daniel R. Berger, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister
RhoanaNet Pipeline: Dense Automatic Neural Annotation. CoRR (2016)
Arthur W. Wetzel, Jennifer Bakal, Markus Dittrich, David G. C. Hildebrand, Josh L. Morgan, Jeff W. Lichtman
Registering large volume serial-section electron microscopy image sets for neural circuit reconstruction using FFT signal whitening. AIPR (2016)
Ali K. Al-Awami, Johanna Beyer, Daniel Haehn, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister, Markus Hadwiger
NeuroBlocks - Visual Tracking of Segmentation and Proofreading for Large Connectomics Projects. IEEE Trans. Vis. Comput. Graph. 22 (1) (2016)
Arthur W. Wetzel, Jennifer Bakal, Markus Dittrich, David G. C. Hildebrand, Josh L. Morgan, Jeff W. Lichtman
Registering large volume serial-section electron microscopy image sets for neural circuit reconstruction using FFT signal whitening. CoRR (2016)
Ayushi Sinha, William R. Gray Roncal, Narayanan Kasthuri, Ming Chuang, Priya Manavalan, Dean Kleissas, Joshua T. Vogelstein, R. Jacob Vogelstein, Randal C. Burns, Jeff W. Lichtman, Michael M. Kazhdan
Automatic Annotation of Axoplasmic Reticula in Pursuit of Connectomes. CoRR (2014)
William R. Gray Roncal, Verena Kaynig-Fittkau, Narayanan Kasthuri, Daniel R. Berger, Joshua T. Vogelstein, Lindsey R. Fernandez, Jeff W. Lichtman, R. Jacob Vogelstein, Hanspeter Pfister, Gregory D. Hager
Volumetric Exploitation of Synaptic Information using Context Localization and Evaluation. CoRR (2014)
Ayushi Sinha, William R. Gray Roncal, Narayanan Kasthuri, Jeff W. Lichtman, Randal C. Burns, Michael M. Kazhdan
Automatic Annotation of Axoplasmic Reticula in Pursuit of Connectomes using High-Resolution Neural EM Data. CoRR (2014)
Daniel Haehn, Seymour Knowles-Barley, Mike Roberts, Johanna Beyer, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister
Design and Evaluation of Interactive Proofreading Tools for Connectomics. IEEE Trans. Vis. Comput. Graph. 20 (12) (2014)
Ali K. Al-Awami, Johanna Beyer, Hendrik Strobelt, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister, Markus Hadwiger
NeuroLines: A Subway Map Metaphor for Visualizing Nanoscale Neuronal Connectivity. IEEE Trans. Vis. Comput. Graph. 20 (12) (2014)
Won-Ki Jeong, Jens Schneider, Axel Hansen, Manhee Lee, Stephen G. Turney, Beverly E. Faulkner-Jones, Jonathan L. Hecht, R. Najarian, Eric Yee, Jeff W. Lichtman, Hanspeter Pfister
A Collaborative Digital Pathology System for Multi-Touch Mobile and Desktop Computing Platforms. Comput. Graph. Forum 32 (6) (2013)
Johanna Beyer, Markus Hadwiger, Ali K. Al-Awami, Won-Ki Jeong, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister
Exploring the Connectome: Petascale Volume Visualization of Microscopy Data Streams. IEEE Computer Graphics and Applications 33 (4) (2013)
Johanna Beyer, Ali K. Al-Awami, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister, Markus Hadwiger
ConnectomeExplorer: Query-Guided Visual Analysis of Large Volumetric Neuroscience Data. IEEE Trans. Vis. Comput. Graph. 19 (12) (2013)
Erhan Bas, Deniz Erdogmus, R. W. Draft, Jeff W. Lichtman
Local tracing of curvilinear structures in volumetric color images: Application to the Brainbow analysis. J. Vis. Commun. Image Represent. 23 (8) (2012)
Viren Jain, Benjamin Bollmann, Mark Richardson, Daniel R. Berger, Moritz Helmstaedter, Kevin L. Briggman, Winfried Denk, Jared B. Bowden, John M. Mendenhall, Wickliffe C. Abraham, Kristen M. Harris, Narayanan Kasthuri, Ken J. Hayworth, Richard Schalek, Juan Carlos Tapia, Jeff W. Lichtman, H. Sebastian Seung
Boundary Learning by Optimization with Topological Constraints. CVPR (2010)
Ranga Srinivasan, Xiaobo Zhou, Eric L. Miller, Ju Lu, Jeff W. Lichtman, Stephen T. C. Wong
Automated Axon Tracking of 3D Confocal Laser Scanning Microscopy Images Using Guided Probabilistic Region Merging. Neuroinformatics 7 (1) (2009)
Hongmin Cai, Xiaoyin Xu, Ju Lu, Jeff W. Lichtman, S. P. Yung, Stephen T. C. Wong
Repulsive force based snake model to segment and track neuronal axons in 3D microscopy image stacks. NeuroImage 32 (4) (2006)