Berkin Bilgic

ORCID

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 38

Top Venues

Massachusetts Institute of Technology, Cambridge, MA, USA (PHD)

Education History

Massachusetts Institute of Technology, Cambridge, MA, USA

PHD

Publications

Xinrui Jiang, Yohan Jun, Jaejin Cho, Mengze Gao, Xingwang Yong, Berkin Bilgic
NLCG-Net: A Model-Based Zero-Shot Learning Framework for Undersampled Quantitative MRI Reconstruction. CoRR (2024)
Jaejin Cho, Yohan Jun, Xiaoqing Wang, Caique Kobayashi, Berkin Bilgic
Improved Multi-Shot Diffusion-Weighted MRI with Zero-Shot Self-Supervised Learning Reconstruction. CoRR (2023)
Heng Yu, Yamin Arefeen, Berkin Bilgic
SubZero: Subspace Zero-Shot MRI Reconstruction. CoRR (2023)
Ziyu Li, Qiuyun Fan, Berkin Bilgic, Guangzhi Wang, Wenchuan Wu, Jonathan R. Polimeni, Karla L. Miller, Susie Yi Huang, Qiyuan Tian
Diffusion MRI data analysis assisted by deep learning synthesized anatomical images (DeepAnat). Medical Image Anal. 86 (2023)
Congyu Liao, Uten Yarach, Xiaozhi Cao, Siddharth Srinivasan Iyer, Nan Wang, Tae Hyung Kim, Qiyuan Tian, Berkin Bilgic, Adam B. Kerr, Kawin Setsompop
High-fidelity mesoscale in-vivo diffusion MRI through gSlider-BUDA and circular EPI with S-LORAKS reconstruction. NeuroImage 275 (2023)
Jaejin Cho, Yohan Jun, Xiaoqing Wang, Caique Kobayashi, Berkin Bilgic
Improved Multi-shot Diffusion-Weighted MRI with Zero-Shot Self-supervised Learning Reconstruction. MICCAI (1) (2023)
Jaejin Cho, Borjan Gagoski, Taehyung Kim, Qiyuan Tian, Stephen Robert Frost, Itthi Chatnuntawech, Berkin Bilgic
Wave-Encoded Model-based Deep Learning for Highly Accelerated Imaging with Joint Reconstruction. CoRR (2022)
Zijing Zhang, Huihui Ye, Maosen Li, Huafeng Liu, Berkin Bilgic
Liver-Buda-Sage: Simultaneous Whole Liver T2 and T*2 Mapping in one Breath-Hold. ISBI (2022)
Qiuyun Fan, Cornelius Eichner, Maryam Afzali, Lars Mueller, Chantal M. W. Tax, Mathias Davids, Mirsad Mahmutovic, Boris Keil, Berkin Bilgic, Kawin Setsompop, Hong-Hsi Lee, Qiyuan Tian, Chiara Maffei, Gabriel Ramos-Llordén, Aapo Nummenmaa, Thomas Witzel, Anastasia Yendiki, Yi-Qiao Song, Chu-Chung Huang, Ching-Po Lin, Nikolaus Weiskopf, Alfred Anwander, Derek K. Jones, Bruce R. Rosen, Lawrence L. Wald, Susie Yi Huang
Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact. NeuroImage 254 (2022)
Qiyuan Tian, Ziyu Li, Qiuyun Fan, Jonathan R. Polimeni, Berkin Bilgic, David H. Salat, Susie Yi Huang
SDnDTI: Self-supervised deep learning-based denoising for diffusion tensor MRI. NeuroImage 253 (2022)
Alexander Lin, Andrew H. Song, Berkin Bilgic, Demba E. Ba
Covariance-Free Sparse Bayesian Learning. IEEE Trans. Signal Process. 70 (2022)
Alexander Lin, Andrew H. Song, Berkin Bilgic, Demba E. Ba
High-Dimensional Sparse Bayesian Learning without Covariance Matrices. CoRR (2022)
Alexander Lin, Andrew H. Song, Berkin Bilgic, Demba E. Ba
High-Dimensional Sparse Bayesian Learning without Covariance Matrices. ICASSP (2022)
Qiyuan Tian, Ziyu Li, Qiuyun Fan, Jonathan R. Polimeni, Berkin Bilgic, David H. Salat, Susie Yi Huang
SDnDTI: Self-supervised deep learning-based denoising for diffusion tensor MRI. CoRR (2021)
Zijing Dong, Fuyixue Wang, Kwok-Shing Chan, Timothy G. Reese, Berkin Bilgic, José P. Marques, Kawin Setsompop
Variable flip angle echo planar time-resolved imaging (vFA-EPTI) for fast high-resolution gradient echo myelin water imaging. NeuroImage 232 (2021)
Heng Yu, Zijing Dong, Yamin Arefeen, Congyu Liao, Kawin Setsompop, Berkin Bilgic
eRAKI: Fast Robust Artificial neural networks for K-space Interpolation (RAKI) with Coil Combination and Joint Reconstruction. CoRR (2021)
Mengze Gao, Huihui Ye, Tae Hyung Kim, Zijing Zhang, Seohee So, Berkin Bilgic
Accurate parameter estimation using scan-specific unsupervised deep learning for relaxometry and MR fingerprinting. CoRR (2021)
Robert Jones, Chiara Maffei, Jean Augustinack, Bruce Fischl, Hui Wang, Berkin Bilgic, Anastasia Yendiki
High-fidelity approximation of grid- and shell-based sampling schemes from undersampled DSI using compressed sensing: Post mortem validation. NeuroImage 244 (2021)
Mehmet Yigit Avci, Ziyu Li, Qiuyun Fan, Susie Yi Huang, Berkin Bilgic, Qiyuan Tian
Quantifying the uncertainty of neural networks using Monte Carlo dropout for deep learning based quantitative MRI. CoRR (2021)
Qiyuan Tian, Natalia Zaretskaya, Qiuyun Fan, Chanon Ngamsombat, Berkin Bilgic, Jonathan R. Polimeni, Susie Yi Huang
Improved cortical surface reconstruction using sub-millimeter resolution MPRAGE by image denoising. NeuroImage 233 (2021)
Alexander Lin, Andrew H. Song, Berkin Bilgic, Demba E. Ba
Covariance-Free Sparse Bayesian Learning. CoRR (2021)
Qiyuan Tian, Ziyu Li, Qiuyun Fan, Chanon Ngamsombat, Yuxin Hu, Congyu Liao, Fuyixue Wang, Kawin Setsompop, Jonathan R. Polimeni, Berkin Bilgic, Susie Yi Huang
SRDTI: Deep learning-based super-resolution for diffusion tensor MRI. CoRR (2021)
Yamin Arefeen, Onur Beker, Heng Yu, Elfar Adalsteinsson, Berkin Bilgic
Scan Specific Artifact Reduction in K-space (SPARK) Neural Networks Synergize with Physics-based Reconstruction to Accelerate MRI. CoRR (2021)
Susie Yi Huang, Thomas Witzel, Boris Keil, Alina Scholz, Mathias Davids, Peter Dietz, Elmar Rummert, Rebecca Ramb, John E. Kirsch, Anastasia Yendiki, Qiuyun Fan, Qiyuan Tian, Gabriel Ramos-Llordén, Hong-Hsi Lee, Aapo Nummenmaa, Berkin Bilgic, Kawin Setsompop, Fuyixue Wang, Alexandru Vlad Avram, Michal E. Komlosh, Dan Benjamini, Kulam Najmudeen Magdoom, Sudhir Pathak, Walter Schneider, Dmitry S. Novikov, Els Fieremans, Slimane Tounekti, Choukri Mekkaoui, Jean Augustinack, Daniel R. Berger, Alexander Shapson-Coe, Jeff Lichtman, Peter J. Basser, Lawrence L. Wald, Bruce R. Rosen
Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome. NeuroImage 243 (2021)
Qiyuan Tian, Berkin Bilgic, Qiuyun Fan, Congyu Liao, Chanon Ngamsombat, Yuxin Hu, Thomas Witzel, Kawin Setsompop, Jonathan R. Polimeni, Susie Yi Huang
DeepDTI: High-fidelity six-direction diffusion tensor imaging using deep learning. NeuroImage 219 (2020)
Congyu Liao, Mary Kate Manhard, Berkin Bilgic, Qiyuan Tian, Qiuyun Fan, Sohyun Han, Fuyixue Wang, Daniel Joseph Park, Thomas Witzel, Jianhui Zhong, Haifeng Wang, Lawrence L. Wald, Kawin Setsompop
Phase-matched virtual coil reconstruction for highly accelerated diffusion echo-planar imaging. NeuroImage 194 (2019)
Daniel Polak, Itthi Chatnuntawech, Jaeyeon Yoon, Siddharth Srinivasan Iyer, Jongho Lee, Peter Bachert, Elfar Adalsteinsson, Kawin Setsompop, Berkin Bilgic
Nonlinear Dipole Inversion (NDI) enables Quantitative Susceptibility Mapping (QSM) without parameter tuning. CoRR (2019)
Itthi Chatnuntawech, Kittipong Tantisantisom, Paisan Khanchaitit, Thitikorn Boonkoom, Berkin Bilgic, Ekapol Chuangsuwanich
Rice Classification Using Spatio-Spectral Deep Convolutional Neural Network. CoRR (2018)
Berkin Bilgic, Itthi Chatnuntawech, Mary Kate Manhard, Qiyuan Tian, Congyu Liao, Stephen F. Cauley, Susie Yi Huang, Jonathan R. Polimeni, Lawrence L. Wald, Kawin Setsompop
Highly Accelerated Multishot EPI through Synergistic Combination of Machine Learning and Joint Reconstruction. CoRR (2018)
Jaeyeon Yoon, Enhao Gong, Itthi Chatnuntawech, Berkin Bilgic, Jin-Gu Lee, Woojin Jung, Jingyu Ko, Hosan Jung, Kawin Setsompop, Greg Zaharchuk, Eung-Yeop Kim, John M. Pauly, Jongho Lee
Quantitative susceptibility mapping using deep neural network: QSMnet. NeuroImage 179 (2018)
Congyu Liao, Berkin Bilgic, Mary Kate Manhard, Bo Zhao, Xiaozhi Cao, Jianhui Zhong, Lawrence L. Wald, Kawin Setsompop
3D MR fingerprinting with accelerated stack-of-spirals and hybrid sliding-window and GRAPPA reconstruction. NeuroImage 162 (2017)
Bo Zhao, Berkin Bilgic, Elfar Adalsteinsson, Mark A. Griswold, Lawrence L. Wald, Kawin Setsompop
Simultaneous multislice magnetic resonance fingerprinting with low-rank and subspace modeling. EMBC (2017)
Berkin Bilgic, Huihui Ye, Lawrence L. Wald, Kawin Setsompop
Simultaneous Time Interleaved MultiSlice (STIMS) for Rapid Susceptibility Weighted acquisition. NeuroImage 155 (2017)
Berkin Bilgic, Luke Xie, Russell Dibb, Christian Langkammer, Aysegul Mutluay, Huihui Ye, Jonathan R. Polimeni, Jean Augustinack, Chunlei Liu, Lawrence L. Wald, Kawin Setsompop
Rapid multi-orientation quantitative susceptibility mapping. NeuroImage 125 (2016)
Suheyla Cetin, Berkin Bilgic, Audrey P. Fan, Samantha J. Holdsworth, Gözde B. Ünal
Vessel Orientation Constrained Quantitative Susceptibility Mapping (QSM) Reconstruction. MICCAI (3) (2016)
Christian Langkammer, Kristian Bredies, Benedikt A. Poser, Markus Barth, Gernot Reishofer, Audrey Peiwen Fan, Berkin Bilgic, Franz Fazekas, Caterina Mainero, Stefan Ropele
Fast quantitative susceptibility mapping using 3D EPI and total generalized variation. NeuroImage 111 (2015)
Bo Zhao, Fan Lam, Berkin Bilgic, Huihui Ye, Kawin Setsompop
Maximum likelihood reconstruction for magnetic resonance fingerprinting. ISBI (2015)
Itthi Chatnuntawech, Berkin Bilgic, Adrián Martín, Kawin Setsompop, Elfar Adalsteinsson
Fast reconstruction for accelerated multi-slice multi-contrast MRI. ISBI (2015)
Felipe Yanez, Audrey P. Fan, Berkin Bilgic, Carlos Milovic, Elfar Adalsteinsson, Pablo Irarrazaval
Quantitative Susceptibility Map Reconstruction via a Total Generalized Variation Regularization. PRNI (2013)
Berkin Bilgic, Itthi Chatnuntawech, Kawin Setsompop, Stephen F. Cauley, Anastasia Yendiki, Lawrence L. Wald, Elfar Adalsteinsson
Fast Dictionary-Based Reconstruction for Diffusion Spectrum Imaging. IEEE Trans. Medical Imaging 32 (11) (2013)
Berkin Bilgic, Adolf Pfefferbaum, Torsten Rohlfing, Edith V. Sullivan, Elfar Adalsteinsson
MRI estimates of brain iron concentration in normal aging using quantitative susceptibility mapping. NeuroImage 59 (3) (2012)
Berkin Bilgic, Kawin Setsompop, Julien Cohen-Adad, Van J. Wedeen, Lawrence L. Wald, Elfar Adalsteinsson
Accelerated Diffusion Spectrum Imaging with Compressed Sensing Using Adaptive Dictionaries. MICCAI (3) (2012)
Berkin Bilgic, Berthold K. P. Horn, Ichiro Masaki
Fast human detection with cascaded ensembles on the GPU. Intelligent Vehicles Symposium (2010)
Berkin Bilgic, Berthold K. P. Horn, Ichiro Masaki
Efficient integral image computation on the GPU. Intelligent Vehicles Symposium (2010)

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Publication Activity (10 Years)

Top Topics

Top Venues

Berkin Bilgic