Jonathan R. Polimeni

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 37

Top Topics

Top Venues

Publications

Ziyu Li, Qiuyun Fan, Berkin Bilgic, Guangzhi Wang, Wenchuan Wu, Jonathan R. Polimeni, Karla L. Miller, Susie Yi Huang, Qiyuan Tian
Diffusion MRI data analysis assisted by deep learning synthesized anatomical images (DeepAnat). Medical Image Anal. 86 (2023)
Anna I. Blazejewska, Thomas Witzel, Jesper L. R. Andersson, Lawrence L. Wald, Jonathan R. Polimeni
Slice-direction geometric distortion evaluation and correction with reversed slice-select gradient acquisitions. NeuroImage 264 (2022)
Qiyuan Tian, Ziyu Li, Qiuyun Fan, Jonathan R. Polimeni, Berkin Bilgic, David H. Salat, Susie Yi Huang
SDnDTI: Self-supervised deep learning-based denoising for diffusion tensor MRI. NeuroImage 253 (2022)
Jingyuan E. Chen, Gary H. Glover, Nina E. Fultz, Bruce R. Rosen, Jonathan R. Polimeni, Laura D. Lewis
Investigating mechanisms of fast BOLD responses: The effects of stimulus intensity and of spatial heterogeneity of hemodynamics. NeuroImage 245 (2021)
Qiyuan Tian, Ziyu Li, Qiuyun Fan, Jonathan R. Polimeni, Berkin Bilgic, David H. Salat, Susie Yi Huang
SDnDTI: Self-supervised deep learning-based denoising for diffusion tensor MRI. CoRR (2021)
Qiyuan Tian, Natalia Zaretskaya, Qiuyun Fan, Chanon Ngamsombat, Berkin Bilgic, Jonathan R. Polimeni, Susie Yi Huang
Improved cortical surface reconstruction using sub-millimeter resolution MPRAGE by image denoising. NeuroImage 233 (2021)
Qiyuan Tian, Ziyu Li, Qiuyun Fan, Chanon Ngamsombat, Yuxin Hu, Congyu Liao, Fuyixue Wang, Kawin Setsompop, Jonathan R. Polimeni, Berkin Bilgic, Susie Yi Huang
SRDTI: Deep learning-based super-resolution for diffusion tensor MRI. CoRR (2021)
Fuyixue Wang, Zijing Dong, Lawrence L. Wald, Jonathan R. Polimeni, Kawin Setsompop
′-weighted BOLD fMRI using Echo Planar Time-resolved Imaging for mapping cortical-depth dependent responses. NeuroImage 245 (2021)
Rajat Kumar, Liang Tan, Alan Kriegstein, Andrew Lithen, Jonathan R. Polimeni, Lilianne R. Mujica-Parodi, Helmut H. Strey
Ground-truth "resting-state" signal provides data-driven estimation and correction for scanner distortion of fMRI time-series dynamics. NeuroImage 227 (2021)
Qiyuan Tian, Berkin Bilgic, Qiuyun Fan, Congyu Liao, Chanon Ngamsombat, Yuxin Hu, Thomas Witzel, Kawin Setsompop, Jonathan R. Polimeni, Susie Yi Huang
DeepDTI: High-fidelity six-direction diffusion tensor imaging using deep learning. NeuroImage 219 (2020)
Shahin Nasr, Cristen LaPierre, Christopher E. Vaughn, Thomas Witzel, Jason P. Stockmann, Jonathan R. Polimeni
functional localization of the temporal monocular crescent representation in human primary visual cortex. NeuroImage 209 (2020)
Natalia Zaretskaya, Jonas Bause, Jonathan R. Polimeni, Pablo R. Grassi, Klaus Scheffler, Andreas M. Bartels
Eye-selective fMRI activity in human primary visual cortex: Comparison between 3 T and 9.4 T, and effects across cortical depth. NeuroImage 220 (2020)
Jonas Bause, Jonathan R. Polimeni, Johannes Stelzer, Myung-Ho In, Philipp Ehses, Pablo Kraemer-Fernandez, Ali Aghaeifar, Eric Lacosse, Rolf Pohmann, Klaus Scheffler
Impact of prospective motion correction, distortion correction methods and large vein bias on the spatial accuracy of cortical laminar fMRI at 9.4 Tesla. NeuroImage 208 (2020)
Jingyuan E. Chen, Laura D. Lewis, Catie Chang, Qiyuan Tian, Nina E. Fultz, Ned A. Ohringer, Bruce R. Rosen, Jonathan R. Polimeni
Resting-state "physiological networks". NeuroImage 213 (2020)
Jingyuan E. Chen, Jonathan R. Polimeni, Saskia Bollmann, Gary H. Glover
On the analysis of rapidly sampled fMRI data. NeuroImage 188 (2019)
Olivia Viessmann, Klaus Scheffler, Marta Bianciardi, Lawrence L. Wald, Jonathan R. Polimeni
Dependence of resting-state fMRI fluctuation amplitudes on cerebral cortical orientation relative to the direction of B0 and anatomical axes. NeuroImage 196 (2019)
David G. Norris, Jonathan R. Polimeni
Laminar (f)MRI: A short history and future prospects. NeuroImage 197 (2019)
Anna I. Blazejewska, Bruce Fischl, Lawrence L. Wald, Jonathan R. Polimeni
Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data. NeuroImage 189 (2019)
Natalia Zaretskaya, Bruce Fischl, Martin Reuter, Ville Renvall, Jonathan R. Polimeni
Advantages of cortical surface reconstruction using submillimeter 7 T MEMPRAGE. NeuroImage 165 (2018)
Seul Lee, Jonathan R. Polimeni, Collin M. Price, Brian L. Edlow, Jennifer A. McNab
Characterizing Signals Within Lesions and Mapping Brain Network Connectivity After Traumatic Axonal Injury: A 7 Tesla Resting-State FMRI Study. Brain Connect. 8 (5) (2018)
Laura D. Lewis, Kawin Setsompop, Bruce R. Rosen, Jonathan R. Polimeni
Stimulus-dependent hemodynamic response timing across the human subcortical-cortical visual pathway identified through high spatiotemporal resolution 7T fMRI. NeuroImage 181 (2018)
Jonathan R. Polimeni, Kâmil Uludag
Neuroimaging with ultra-high field MRI: Present and future. NeuroImage 168 (2018)
Roberta Sclocco, Florian Beissner, Marta Bianciardi, Jonathan R. Polimeni, Vitaly Napadow
Challenges and opportunities for brainstem neuroimaging with ultrahigh field MRI. NeuroImage 168 (2018)
Fa-Hsuan Lin, Jonathan R. Polimeni, Jo-Fu Lotus Lin, Kevin Wen-Kai Tsai, Ying-Hua Chu, Pu-Yeh Wu, Yi-Tien Li, Yi-Cheng Hsu, Shang-Yueh Tsai, Wen-Jui Kuo
Relative latency and temporal variability of hemodynamic responses at the human primary visual cortex. NeuroImage 164 (2018)
Berkin Bilgic, Itthi Chatnuntawech, Mary Kate Manhard, Qiyuan Tian, Congyu Liao, Stephen F. Cauley, Susie Yi Huang, Jonathan R. Polimeni, Lawrence L. Wald, Kawin Setsompop
Highly Accelerated Multishot EPI through Synergistic Combination of Machine Learning and Joint Reconstruction. CoRR (2018)
Jonathan R. Polimeni, Ville Renvall, Natalia Zaretskaya, Bruce Fischl
Analysis strategies for high-resolution UHF-fMRI data. NeuroImage 168 (2018)
Anna Blazejewska, Himanshu Bhat, Lawrence L. Wald, Jonathan R. Polimeni
Reduction of across-run variability of temporal SNR in accelerated EPI time-series data through FLEET-based robust autocalibration. NeuroImage 152 (2017)
Tong Tong, Iman Aganj, Tian Ge, Jonathan R. Polimeni, Bruce Fischl
Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration. NeuroImage 158 (2017)
Lawrence L. Wald, Jonathan R. Polimeni
Impacting the effect of fMRI noise through hardware and acquisition choices - Implications for controlling false positive rates. NeuroImage 154 (2017)
Qiuyun Fan, Aapo Nummenmaa, Jonathan R. Polimeni, Thomas Witzel, Susie Yi Huang, Van J. Wedeen, Bruce R. Rosen, Lawrence L. Wald
HIgh b-value and high Resolution Integrated Diffusion (HIBRID) imaging. NeuroImage 150 (2017)
Berkin Bilgic, Luke Xie, Russell Dibb, Christian Langkammer, Aysegul Mutluay, Huihui Ye, Jonathan R. Polimeni, Jean Augustinack, Chunlei Liu, Lawrence L. Wald, Kawin Setsompop
Rapid multi-orientation quantitative susceptibility mapping. NeuroImage 125 (2016)
Jyrki Ahveninen, Wei-Tang Chang, Samantha Huang, Boris Keil, Norbert Kopco, Stephanie Rossi, Giorgio Bonmassar, Thomas Witzel, Jonathan R. Polimeni
Intracortical depth analyses of frequency-sensitive regions of human auditory cortex using 7T fMRI. NeuroImage 143 (2016)
Qiuyun Fan, Thomas Witzel, Aapo Nummenmaa, Koene R. A. Van Dijk, John D. Van Horn, Michelle K. Drews, Leah H. Somerville, Margaret A. Sheridan, Rosario M. Santillana, Jenna Snyder, Trey Hedden, Emily E. Shaw, Marisa O. Hollinshead, Ville Renvall, Roberta Zanzonico, Boris Keil, Stephen F. Cauley, Jonathan R. Polimeni, M. Dylan Tisdall, Randy L. Buckner, Van J. Wedeen, Lawrence L. Wald, Arthur W. Toga, Bruce R. Rosen
MGH-USC Human Connectome Project datasets with ultra-high b-value diffusion MRI. NeuroImage 124 (2016)
Ville Renvall, Thomas Witzel, Lawrence L. Wald, Jonathan R. Polimeni
echo planar imaging data. NeuroImage 134 (2016)
Marta Bianciardi, Nicola Toschi, Brian L. Edlow, Cornelius Eichner, Kawin Setsompop, Jonathan R. Polimeni, Emery N. Brown, Hannah C. Kinney, Bruce R. Rosen, Lawrence L. Wald
Neuroimaging Template of Human Brainstem Nuclei of the Ascending Arousal, Autonomic, and Motor Systems. Brain Connect. 5 (10) (2015)
William Scott Hoge, Jonathan R. Polimeni
A dual-polarity grappa kernel for the robust reconstruction of accelerated EPI data. ISBI (2015)
Sungho Tak, Jonathan R. Polimeni, Danny J. J. Wang, Lirong Yan, J. Jean Chen
Associations of Resting-State fMRI Functional Connectivity with Flow-BOLD Coupling and Regional Vasculature. Brain Connect. 5 (3) (2015)
Qiuyun Fan, Aapo Nummenmaa, Thomas Witzel, Roberta Zanzonico, Boris Keil, Stephen F. Cauley, Jonathan R. Polimeni, M. Dylan Tisdall, Koene R. A. Van Dijk, Randy L. Buckner, Van J. Wedeen, Bruce R. Rosen, Lawrence L. Wald
-Value Diffusion Magnetic Resonance Imaging on the MGH-USC Connectom Scanner. Brain Connect. 4 (9) (2014)
Marjorie Villien, Hsiao-Ying Wey, Joseph B. Mandeville, Ciprian Catana, Jonathan R. Polimeni, Christin Y. M. Sander, Nicole R. Zürcher, Daniel B. Chonde, Joanna S. Fowler, Bruce R. Rosen, Jacob M. Hooker
Dynamic functional imaging of brain glucose utilization using fPET-FDG. NeuroImage 100 (2014)
Fa-Hsuan Lin, Thomas Witzel, Tommi Raij, Jyrki Ahveninen, Kevin Wen-Kai Tsai, Ying-Hua Chu, Wei-Tang Chang, Aapo Nummenmaa, Jonathan R. Polimeni, Wen-Jui Kuo, Jen-Chuen Hsieh, Bruce R. Rosen, John W. Belliveau
Corrigendum to "fMRI hemodynamics accurately reflects neuronal timing in the human brain measured by MEG" [Neuroimage 78 (2013) 372-384]. NeuroImage 95 (2014)
Kyoko Fujimoto, Jonathan R. Polimeni, André J. W. van der Kouwe, Martin Reuter, Tobias Kober, Thomas Benner, Bruce Fischl, Lawrence L. Wald
Quantitative comparison of cortical surface reconstructions from MP2RAGE and multi-echo MPRAGE data at 3 and 7 T. NeuroImage 90 (2014)
Günther Grabner, Benedikt A. Poser, Kyoko Fujimoto, Jonathan R. Polimeni, Lawrence L. Wald, Siegfried Trattnig, Ivan Toni, Markus Barth
A study-specific fMRI normalization approach that operates directly on high resolution functional EPI data at 7 Tesla. NeuroImage 100 (2014)
Sungho Tak, Danny J. J. Wang, Jonathan R. Polimeni, Lirong Yan, J. Jean Chen
Dynamic and static contributions of the cerebrovasculature to the resting-state BOLD signal. NeuroImage 84 (2014)
Herve Lombaert, Leo J. Grady, Jonathan R. Polimeni, Farida Cheriet
FOCUSR: Feature Oriented Correspondence Using Spectral Regularization-A Method for Precise Surface Matching. IEEE Trans. Pattern Anal. Mach. Intell. 35 (9) (2013)
Daniel S. Weller, Jonathan R. Polimeni, Leo J. Grady, Lawrence L. Wald, Elfar Adalsteinsson, Vivek K. Goyal
Sparsity-Promoting Calibration for GRAPPA Accelerated Parallel MRI Reconstruction. IEEE Trans. Medical Imaging 32 (7) (2013)
Wei-Tang Chang, Aapo Nummenmaa, Thomas Witzel, Jyrki Ahveninen, Samantha Huang, Kevin Wen-Kai Tsai, Ying-Hua Chu, Jonathan R. Polimeni, John W. Belliveau, Fa-Hsuan Lin
Whole-head rapid fMRI acquisition using echo-shifted magnetic resonance inverse imaging. NeuroImage 78 (2013)
Matthew F. Glasser, Stamatios N. Sotiropoulos, J. Anthony Wilson, Timothy S. Coalson, Bruce Fischl, Jesper L. R. Andersson, Junqian Xu, Saâd Jbabdi, Matthew A. Webster, Jonathan R. Polimeni, David C. Van Essen, Mark Jenkinson
The minimal preprocessing pipelines for the Human Connectome Project. NeuroImage 80 (2013)
Jennifer A. McNab, Jonathan R. Polimeni, Ruopeng Wang, Jean Augustinack, Kyoko Fujimoto, Allison Stevens, Thomas Janssens, Reza Farivar, Rebecca D. Folkerth, Wim Vanduffel, Lawrence L. Wald
Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex. NeuroImage 69 (2013)
Jennifer A. McNab, Jonathan R. Polimeni, Ruopeng Wang, Jean Augustinack, Kyoko Fujimoto, Allison Stevens, Christina Triantafyllou, Thomas Janssens, Reza Farivar, Rebecca D. Folkerth, Wim Vanduffel, Lawrence L. Wald
Corrigendum to "Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex" [NeuroImage 69 (2013) 87-100]. NeuroImage 81 (2013)
Fa-Hsuan Lin, Thomas Witzel, Tommi Raij, Jyrki Ahveninen, Kevin Wen-Kai Tsai, Ying-Hua Chu, Wei-Tang Chang, Aapo Nummenmaa, Jonathan R. Polimeni, Wen-Jui Kuo, Jen-Chuen Hsieh, Bruce R. Rosen, John W. Belliveau
fMRI hemodynamics accurately reflects neuronal timing in the human brain measured by MEG. NeuroImage 78 (2013)
Daniel S. Weller, Jonathan R. Polimeni, Leo J. Grady, Lawrence L. Wald, Elfar Adalsteinsson, Vivek K. Goyal
Accelerated parallel magnetic resonance imaging reconstruction using joint estimation with a sparse signal model. SSP (2012)
Julien Cohen-Adad, Jonathan R. Polimeni, Karl G. Helmer, Thomas Benner, Jennifer A. McNab, Lawrence L. Wald, Bruce R. Rosen, Caterina Mainero
orientation-dependence at 7 T reveal cyto- and myeloarchitecture organization of the human cortex. NeuroImage 60 (2) (2012)
Thomas Janssens, Boris Keil, Reza Farivar, Jennifer A. McNab, Jonathan R. Polimeni, Annelies Gerits, J. T. Arsenault, Lawrence L. Wald, Wim Vanduffel
An implanted 8-channel array coil for high-resolution macaque MRI at 3 T. NeuroImage 62 (3) (2012)
Daniel S. Weller, Jonathan R. Polimeni, Leo J. Grady, Lawrence L. Wald, Elfar Adalsteinsson, Vivek K. Goyal
Combined compressed sensing and parallel mri compared for uniform and random cartesian undersampling of K-space. ICASSP (2011)
Daniel S. Weller, Jonathan R. Polimeni, Leo J. Grady, Lawrence L. Wald, Elfar Adalsteinsson, Vivek K. Goyal
Evaluating sparsity penalty functions for combined compressed sensing and parallel MRI. ISBI (2011)
Herve Lombaert, Leo J. Grady, Jonathan R. Polimeni, Farida Cheriet
Fast Brain Matching with Spectral Correspondence. IPMI (2011)
Maria Ida Iacono, Nikos Makris, Luca T. Mainardi, John T. Gale, André J. W. van der Kouwe, Azma Mareyam, Jonathan R. Polimeni, Lawrence L. Wald, Bruce Fischl, Emad N. Eskandar, Giorgio Bonmassar
Atlas-based segmentation for globus pallidus internus targeting on low-resolution MRI. EMBC (2011)
Christina Triantafyllou, Jonathan R. Polimeni, Lawrence L. Wald
Physiological noise and signal-to-noise ratio in fMRI with multi-channel array coils. NeuroImage 55 (2) (2011)
Mukund Balasubramanian, Jonathan R. Polimeni, Eric L. Schwartz
Near-isometric flattening of brain surfaces. NeuroImage 51 (2) (2010)
Jonathan R. Polimeni, Bruce Fischl, Douglas N. Greve, Lawrence L. Wald
Laminar analysis of 7 T BOLD using an imposed spatial activation pattern in human V1. NeuroImage 52 (4) (2010)
Bruce Fischl, Allison Stevens, Niranjini Rajendran, B. T. Thomas Yeo, Douglas N. Greve, Koen Van Leemput, Jonathan R. Polimeni, Sita Kakunoori, Randy L. Buckner, Jennifer L. Pacheco, David H. Salat, Jennifer Melcher, Matthew P. Frosch, Bradley T. Hyman, Patricia Ellen Grant, Bruce R. Rosen, André J. W. van der Kouwe, Graham C. Wiggins, Lawrence L. Wald, Jean Augustinack
Predicting the location of entorhinal cortex from MRI. NeuroImage 47 (1) (2009)
Mukund Balasubramanian, Jonathan R. Polimeni, Eric L. Schwartz
Exact Geodesics and Shortest Paths on Polyhedral Surfaces. IEEE Trans. Pattern Anal. Mach. Intell. 31 (6) (2009)
Oliver Hinds, Jonathan R. Polimeni, Niranjini Rajendran, Mukund Balasubramanian, Katrin Amunts, Karl Zilles, Eric L. Schwartz, Bruce Fischl, Christina Triantafyllou
Locating the functional and anatomical boundaries of human primary visual cortex. NeuroImage 46 (4) (2009)
Fa-Hsuan Lin, Thomas Witzel, Joseph B. Mandeville, Jonathan R. Polimeni, Thomas A. Zeffiro, Douglas N. Greve, Graham C. Wiggins, Lawrence L. Wald, John W. Belliveau
Event-related single-shot volumetric functional magnetic resonance inverse imaging of visual processing. NeuroImage 42 (1) (2008)
Oliver Hinds, Niranjini Rajendran, Jonathan R. Polimeni, Jean C. Augustinack, Graham C. Wiggins, Lawrence L. Wald, H. Diana Rosas, Andreas Potthast, Eric L. Schwartz, Bruce Fischl
Accurate prediction of V1 location from cortical folds in a surface coordinate system. NeuroImage 39 (4) (2008)
Mukund Balasubramanian, Jonathan R. Polimeni, Eric L. Schwartz
The V1-V2-V3 complex: quasiconformal dipole maps in primate striate and extra-striate cortex. Neural Networks 15 (10) (2002)