Saâd Jbabdi

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 34

Top Topics

Deformable Registration

Surface Matching

Top Venues

Publications

Zeju Li, Ying-Qiu Zheng, Chen Chen, Saâd Jbabdi
Learning Label Refinement and Threshold Adjustment for Imbalanced Semi-Supervised Learning. CoRR (2024)
Ying-Qiu Zheng, Harith Akram, Stephen M. Smith, Saâd Jbabdi
A Transfer Learning Approach to Localising a Deep Brain Stimulation Target. MICCAI (9) (2023)
István N. Huszár, Menuka Pallebage-Gamarallage, Sarah Bangerter-Christensen, Hannah Brooks, Sean P. Fitzgibbon, Sean Foxley, Marlies Hiemstra, Amy F. D. Howard, Saâd Jbabdi, Daniel Z. L. Kor, Anna Leonte, Jeroen Mollink, Adele Smart, Benjamin C. Tendler, Martin R. Turner, Olaf Ansorge, Karla L. Miller, Mark Jenkinson
Tensor image registration library: Deformable registration of stand-alone histology images to whole-brain post-mortem MRI data. NeuroImage 265 (2023)
Ying-Qiu Zheng, Seyedeh-Rezvan Farahibozorg, Weikang Gong, Hossein Rafipoor, Saâd Jbabdi, Stephen M. Smith
Accurate predictions of individual differences in task-evoked brain activity from resting-state fMRI using a sparse ensemble learner. NeuroImage 259 (2022)
Hossein Rafipoor, Ying-Qiu Zheng, Ludovica Griffanti, Saâd Jbabdi, Michiel Cottaar
Identifying microstructural changes in diffusion MRI; How to circumvent parameter degeneracy. NeuroImage 260 (2022)
Vaanathi Sundaresan, Julia F. Lehman, Sean P. Fitzgibbon, Saâd Jbabdi, Suzanne N. Haber, Anastasia Yendiki
Constrained Self-supervised Method with Temporal Ensembling for Fiber Bundle Detection on Anatomic Tracing Data. MOVI@MICCAI (2022)
Daniel Z. L. Kor, Saâd Jbabdi, István N. Huszár, Jeroen Mollink, Benjamin C. Tendler, Sean Foxley, Chaoyue Wang, Connor Scott, Adele Smart, Olaf Ansorge, Menuka Pallebage-Gamarallage, Karla L. Miller, Amy F. D. Howard
An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons. NeuroImage 264 (2022)
Amy F. D. Howard, Michiel Cottaar, Mark Drakesmith, Qiuyun Fan, Susie Yi Huang, Derek K. Jones, Frederik J. Lange, Jeroen Mollink, Suryanarayana Umesh Rudrapatna, Qiyuan Tian, Karla L. Miller, Saâd Jbabdi
Estimating axial diffusivity in the NODDI model. NeuroImage 262 (2022)
Vaanathi Sundaresan, Julia F. Lehman, Sean P. Fitzgibbon, Saâd Jbabdi, Suzanne N. Haber, Anastasia Yendiki
Constrained self-supervised method with temporal ensembling for fiber bundle detection on anatomic tracing data. CoRR (2022)
Chengyuan Wu, Francisca Ferreira, Michael D. Fox, Noam Harel, Jona A. Hattangadi-Gluth, Andreas Horn, Saâd Jbabdi, Joshua Kahan, Ashwini Oswal, Sameer A. Sheth, Yanmei Tie, Vejay Vakharia, Ludvic U. Zrinzo, Harith Akram
Clinical applications of magnetic resonance imaging based functional and structural connectivity. NeuroImage 244 (2021)
Michiel Cottaar, Matteo Bastiani, Nikhil Boddu, Matthew F. Glasser, Suzanne N. Haber, David C. Van Essen, Stamatios N. Sotiropoulos, Saâd Jbabdi
Modelling white matter in gyral blades as a continuous vector field. NeuroImage 227 (2021)
Seyedeh-Rezvan Farahibozorg, Janine D. Bijsterbosch, Weikang Gong, Saâd Jbabdi, Stephen M. Smith, Samuel J. Harrison, Mark W. Woolrich
Hierarchical modelling of functional brain networks in population and individuals from big fMRI data. NeuroImage 243 (2021)
Benjamin C. Tendler, Sean Foxley, Moisés Hernández-Fernández, Michiel Cottaar, Connor Scott, Olaf Ansorge, Karla L. Miller, Saâd Jbabdi
Use of multi-flip angle measurements to account for transmit inhomogeneity and non-Gaussian diffusion in DW-SSFP. NeuroImage 220 (2020)
E. Thompson, Ali Reza Mohammadi-Nejad, Emma C. Robinson, Jesper L. R. Andersson, Saâd Jbabdi, Matthew F. Glasser, Matteo Bastiani, Stamatios N. Sotiropoulos
Non-negative data-driven mapping of structural connections with application to the neonatal brain. NeuroImage 222 (2020)
Shaun Warrington, Katherine L. Bryant, Alexandre A. Khrapitchev, Jérôme Sallet, Marina Charquero-Ballester, Gwenaëlle Douaud, Saâd Jbabdi, Rogier B. Mars, Stamatios N. Sotiropoulos
XTRACT - Standardised protocols for automated tractography in the human and macaque brain. NeuroImage 217 (2020)
Michiel Cottaar, Filip Szczepankiewicz, Matteo Bastiani, Moisés Hernández-Fernández, Stamatios N. Sotiropoulos, Markus Nilsson, Saâd Jbabdi
Improved fibre dispersion estimation using b-tensor encoding. NeuroImage 215 (2020)
Joonas A. A. Autio, Matthew F. Glasser, Takayuki Ose, Chad J. Donahue, Matteo Bastiani, Masahiro Ohno, Yoshihiko Kawabata, Yuta Urushibata, Katsutoshi Murata, Kantaro Nishigori, Masataka Yamaguchi, Yuki Hori, Atsushi Yoshida, Yasuhiro Go, Timothy S. Coalson, Saâd Jbabdi, Stamatios N. Sotiropoulos, Henry Kennedy, Takuya Hayashi
Towards HCP-Style macaque connectomes: 24-Channel 3T multi-array coil, MRI sequences and preprocessing. NeuroImage 215 (2020)
Robert Becker, Diego Vidaurre, Andrew J. Quinn, Romesh G. Abeysuriya, Owen Parker Jones, Saâd Jbabdi, Mark W. Woolrich
Transient spectral events in resting state MEG predict individual task responses. NeuroImage 215 (2020)
Amy FD. Howard, Jeroen Mollink, Michiel Kleinnijenhuis, Menuka Pallebage-Gamarallage, Matteo Bastiani, Michiel Cottaar, Karla L. Miller, Saâd Jbabdi
Joint modelling of diffusion MRI and microscopy. NeuroImage 201 (2019)
Matteo Bastiani, Jesper L. R. Andersson, Lucilio Cordero-Grande, Maria Murgasova, Jana Hutter, Anthony N. Price, Antonios Makropoulos, Sean P. Fitzgibbon, Emer J. Hughes, Daniel Rueckert, Suresh Victor, Mary A. Rutherford, A. David Edwards, Stephen M. Smith, Jacques-Donald Tournier, Joseph V. Hajnal, Saâd Jbabdi, Stamatios N. Sotiropoulos
Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project. NeuroImage 185 (2019)
Moisés Hernández-Fernández, István Zoltan Reguly, Saâd Jbabdi, Michael B. Giles, Stephen M. Smith, Stamatios N. Sotiropoulos
Using GPUs to accelerate computational diffusion MRI: From microstructure estimation to tractography and connectomes. NeuroImage 188 (2019)
Matteo Bastiani, Michiel Cottaar, Sean P. Fitzgibbon, Sana Suri, Fidel Alfaro-Almagro, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson
Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction. NeuroImage 184 (2019)
Fidel Alfaro-Almagro, Mark Jenkinson, Neal K. Bangerter, Jesper L. R. Andersson, Ludovica Griffanti, Gwenaëlle Douaud, Stamatios N. Sotiropoulos, Saâd Jbabdi, Moisés Hernández-Fernández, Emmanuel Vallée, Diego Vidaurre, Matthew A. Webster, Paul McCarthy, Christopher Rorden, Alessandro Daducci, Daniel C. Alexander, Hui Zhang, Iulius Dragonu, Paul M. Matthews, Karla L. Miller, Stephen M. Smith
Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank. NeuroImage 166 (2018)
Romesh G. Abeysuriya, Jonathan Hadida, Stamatios N. Sotiropoulos, Saâd Jbabdi, Robert Becker, Benjamin A. E. Hunt, Matthew J. Brookes, Mark W. Woolrich
A biophysical model of dynamic balancing of excitation and inhibition in fast oscillatory large-scale networks. PLoS Comput. Biol. 14 (2) (2018)
Emmanuel Vallée, Wenchuan Wu, Francesca Galassi, Saâd Jbabdi, Stephen M. Smith
A Machine Learning Approach to Diffusion MRI Partial Volume Estimation. SASHIMI@MICCAI (2018)
Michiel Cottaar, Matteo Bastiani, Charles Chen, Krikor Dikranian, David C. Van Essen, Timothy Edward John Behrens, Stamatios N. Sotiropoulos, Saâd Jbabdi
A gyral coordinate system predictive of fibre orientations. NeuroImage 176 (2018)
R. Cameron Craddock, Pierre Bellec, Saâd Jbabdi
Neuroimage special issue on brain segmentation and parcellation - Editorial. NeuroImage 170 (2018)
Jonathan Hadida, Stamatios N. Sotiropoulos, Romesh G. Abeysuriya, Mark W. Woolrich, Saâd Jbabdi
Bayesian Optimisation of Large-Scale Biophysical Networks. NeuroImage 174 (2018)
Jonathan O'Muircheartaigh, Saâd Jbabdi
Concurrent white matter bundles and grey matter networks using independent component analysis. NeuroImage 170 (2018)
Jeroen Mollink, Michiel Kleinnijenhuis, Anne-Marie van Cappellen van Walsum, Stamatios N. Sotiropoulos, Michiel Cottaar, Christopher Mirfin, Mattias P. Heinrich, Mark Jenkinson, Menuka Pallebage-Gamarallage, Olaf Ansorge, Saâd Jbabdi, Karla L. Miller
Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging. NeuroImage 157 (2017)
Matteo Bastiani, Michiel Cottaar, Krikor Dikranian, Aurobrata Ghosh, Hui Zhang, Daniel C. Alexander, Tim E. J. Behrens, Saâd Jbabdi, Stamatios N. Sotiropoulos
Improved tractography using asymmetric fibre orientation distributions. NeuroImage 158 (2017)
Harith Akram, Stamatios N. Sotiropoulos, Saâd Jbabdi, Dejan Georgiev, Philipp Mahlknecht, Jonathan Hyam, Thomas Foltynie, Patricia Limousin, Enrico De Vita, Marjan Jahanshahi, Marwan I. Hariz, John Ashburner, Tim E. J. Behrens, Ludvic U. Zrinzo
Subthalamic deep brain stimulation sweet spots and hyperdirect cortical connectivity in Parkinson's disease. NeuroImage 158 (2017)
Stamatios N. Sotiropoulos, Moisés Hernández-Fernández, An T. Vu, Jesper L. R. Andersson, Steen Moeller, Essa Yacoub, Christophe Lenglet, Kamil Ugurbil, Timothy Edward John Behrens, Saâd Jbabdi
Fusion in diffusion MRI for improved fibre orientation estimation: An application to the 3T and 7T data of the Human Connectome Project. NeuroImage 134 (2016)
K. M. van Baarsen, Michiel Kleinnijenhuis, Saâd Jbabdi, Stamatios N. Sotiropoulos, J. A. Grotenhuis, Anne-Marie van Cappellen van Walsum
A probabilistic atlas of the cerebellar white matter. NeuroImage 124 (2016)
An T. Vu, Edward J. Auerbach, Christophe Lenglet, Steen Moeller, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Essa Yacoub, Kamil Ugurbil
High resolution whole brain diffusion imaging at 7 T for the Human Connectome Project. NeuroImage 122 (2015)
Peter V. Kochunov, Neda Jahanshad, Daniel S. Marcus, Anderson M. Winkler, Emma Sprooten, Thomas E. Nichols, Susan N. Wright, L. Elliot Hong, Binish Patel, Timothy Behrens, Saâd Jbabdi, Jesper L. R. Andersson, Christophe Lenglet, Essa Yacoub, Steen Moeller, Eddie Auerbach, Kamil Ugurbil, Stamatios N. Sotiropoulos, Rachel M. Brouwer, Bennett A. Landman, Hervé Lemaître, Anouk den Braber, Marcel P. Zwiers, Stuart Ritchie, Kimm van Hulzen, Laura Almasy, Joanne E. Curran, Greig I. de Zubicaray, Ravi Duggirala, Peter T. Fox
Heritability of fractional anisotropy in human white matter: A comparison of Human Connectome Project and ENIGMA-DTI data. NeuroImage 111 (2015)
Sean Foxley, Saâd Jbabdi, Stuart Clare, Wilfred Lam, Olaf Ansorge, Gwenaëlle Douaud, Karla L. Miller
Improving diffusion-weighted imaging of post-mortem human brains: SSFP at 7 T. NeuroImage 102 (2014)
Emma C. Robinson, Saâd Jbabdi, Matthew F. Glasser, Jesper L. R. Andersson, Gregory C. Burgess, Michael P. Harms, Stephen M. Smith, David C. Van Essen, Mark Jenkinson
MSM: A new flexible framework for Multimodal Surface Matching. NeuroImage 100 (2014)
Emma C. Robinson, Saâd Jbabdi, Jesper L. R. Andersson, Stephen M. Smith, Matthew F. Glasser, David C. Van Essen, Gregory C. Burgess, Michael P. Harms, Deanna M. Barch, Mark Jenkinson
Multimodal Surface Matching: Fast and Generalisable Cortical Registration Using Discrete Optimisation. IPMI (2013)
Kamil Ugurbil, Junqian Xu, Edward J. Auerbach, Steen Moeller, An T. Vu, Julio Martin Duarte-Carvajalino, Christophe Lenglet, Xiaoping Wu, Sebastian Schmitter, Pierre-François van de Moortele, John P. Strupp, Guillermo Sapiro, Federico De Martino, Dingxin Wang, Noam Harel, Michael Garwood, Liyong Chen, David A. Feinberg, Stephen M. Smith, Karla L. Miller, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Timothy Edward John Behrens, Matthew F. Glasser, David C. Van Essen, Essa Yacoub
Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project. NeuroImage 80 (2013)
Matthew F. Glasser, Stamatios N. Sotiropoulos, J. Anthony Wilson, Timothy S. Coalson, Bruce Fischl, Jesper L. R. Andersson, Junqian Xu, Saâd Jbabdi, Matthew A. Webster, Jonathan R. Polimeni, David C. Van Essen, Mark Jenkinson
The minimal preprocessing pipelines for the Human Connectome Project. NeuroImage 80 (2013)
Stamatios N. Sotiropoulos, Saâd Jbabdi, Junqian Xu, Jesper L. R. Andersson, Steen Moeller, Edward J. Auerbach, Matthew F. Glasser, Moisés Hernández, Guillermo Sapiro, Mark Jenkinson, David A. Feinberg, Essa Yacoub, Christophe Lenglet, David C. Van Essen, Kamil Ugurbil, Timothy Edward John Behrens
Advances in diffusion MRI acquisition and processing in the Human Connectome Project. NeuroImage 80 (2013)
Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Mark William Woolrich, Kamil Ugurbil, Timothy Edward John Behrens
RubiX: Combining Spatial Resolutions for Bayesian Inference of Crossing Fibers in Diffusion MRI. IEEE Trans. Medical Imaging 32 (6) (2013)
Thomas Blumensath, Saâd Jbabdi, Matthew F. Glasser, David C. Van Essen, Kamil Ugurbil, Timothy Edward John Behrens, Stephen M. Smith
Spatially constrained hierarchical parcellation of the brain with resting-state fMRI. NeuroImage 76 (2013)
Stamatios N. Sotiropoulos, Timothy Edward John Behrens, Saâd Jbabdi
Modelling fibre fanning in diffusion-weighted MRI. ISBI (2012)
Stamatios N. Sotiropoulos, Timothy Edward John Behrens, Saâd Jbabdi
Ball and rackets: Inferring fiber fanning from diffusion-weighted MRI. NeuroImage 60 (2) (2012)
Karla L. Miller, Jennifer A. McNab, Saâd Jbabdi, Gwenaëlle Douaud
Diffusion tractography of post-mortem human brains: Optimization and comparison of spin echo and steady-state free precession techniques. NeuroImage 59 (3) (2012)
Anastasia Yendiki, Patricia Panneck, Priti Srinivasan, Allison Stevens, Lilla Zöllei, Jean Augustinack, Ruopeng Wang, David H. Salat, Stefan Ehrlich, Tim E. J. Behrens, Saâd Jbabdi, Randy L. Gollub, Bruce Fischl
Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy. Frontiers Neuroinformatics 5 (2011)
Saâd Jbabdi, Heidi Johansen-Berg
Tractography: Where Do We Go from Here? Brain Connect. 1 (3) (2011)
Karla L. Miller, Charlotte J. Stagg, Gwenaëlle Douaud, Saâd Jbabdi, Stephen M. Smith, Timothy Edward John Behrens, Mark Jenkinson, Steven A. Chance, Margaret M. Esiri, Natalie L. Voets, Ned Jenkinson, Tipu Z. Aziz, Martin R. Turner, Heidi Johansen-Berg, Jennifer A. McNab
Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner. NeuroImage 57 (1) (2011)
Gwenaëlle Douaud, Saâd Jbabdi, Timothy Edward John Behrens, Ricarda A. Menke, Achim Gass, Andreas U. Monsch, Anil Rao, Brandon J. Whitcher, Gordon L. Kindlmann, Paul M. Matthews, Stephen M. Smith
DTI measures in crossing-fibre areas: Increased diffusion anisotropy reveals early white matter alteration in MCI and mild Alzheimer's disease. NeuroImage 55 (3) (2011)
Jonathan J. Crofts, Desmond J. Higham, Rose Bosnell, Saâd Jbabdi, Paul M. Matthews, T. E. J. Behrens, Heidi Johansen-Berg
Network analysis detects changes in the contralesional hemisphere following stroke. NeuroImage 54 (1) (2011)
Ricarda A. Menke, Saâd Jbabdi, Karla L. Miller, Paul M. Matthews, Mojtaba Zarei
Connectivity-based segmentation of the substantia nigra in human and its implications in Parkinson's disease. NeuroImage 52 (4) (2010)
Saâd Jbabdi, Timothy Edward John Behrens, Stephen M. Smith
Crossing fibres in tract-based spatial statistics. NeuroImage 49 (1) (2010)
Ricarda A. Menke, Jan Scholz, Karla L. Miller, Sean C. L. Deoni, Saâd Jbabdi, Paul M. Matthews, Mojtaba Zarei
MRI characteristics of the substantia nigra in Parkinson's disease: A combined quantitative T1 and DTI study. NeuroImage 47 (2) (2009)
Kyle T. S. Pattinson, Georgios D. Mitsis, Ann K. Harvey, Saâd Jbabdi, Sharon Dirckx, Stephen D. Mayhew, Richard Rogers, Irene Tracey, Richard G. Wise
Determination of the human brainstem respiratory control network and its cortical connections in vivo using functional and structural imaging. NeuroImage 44 (2) (2009)
Saâd Jbabdi, Mark William Woolrich, Timothy Edward John Behrens
Multiple-subjects connectivity-based parcellation using hierarchical Dirichlet process mixture models. NeuroImage 44 (2) (2009)
Mark William Woolrich, Saâd Jbabdi, Brian Patenaude, Michael A. Chappell, Salima Makni, Timothy Behrens, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith
Bayesian analysis of neuroimaging data in FSL. NeuroImage 45 (1) (2009)
Jennifer A. McNab, Saâd Jbabdi, Sean C. L. Deoni, Gwenaëlle Douaud, Timothy Edward John Behrens, Karla L. Miller
High resolution diffusion-weighted imaging in fixed human brain using diffusion-weighted steady state free precession. NeuroImage 46 (3) (2009)
Gwenaëlle Douaud, Timothy Edward John Behrens, Cyril Poupon, Yann Cointepas, Saâd Jbabdi, Véronique Gaura, Narly Golestani, Pierre Krystkowiak, Christophe Verny, Philippe Damier, Anne-Catherine Bachoud-Lévi, Philippe Hantraye, Philippe Remy
In vivo evidence for the selective subcortical degeneration in Huntington's disease. NeuroImage 46 (4) (2009)
Saâd Jbabdi, Pierre Bellec, Roberto Toro, Jean Daunizeau, Mélanie Pélégrini-Issac, Habib Benali
Accurate Anisotropic Fast Marching for Diffusion-Based Geodesic Tractography. Int. J. Biomed. Imaging 2008 (2008)
Saâd Jbabdi, Mark W. Woolrich, Jesper L. R. Andersson, T. E. J. Behrens
A Bayesian framework for global tractography. NeuroImage 37 (1) (2007)
T. E. J. Behrens, Heidi Johansen-Berg, Saâd Jbabdi, Matthew F. S. Rushworth, Mark W. Woolrich
Probabilistic diffusion tractography with multiple fibre orientations: What can we gain? NeuroImage 34 (1) (2007)
Jean Daunizeau, Christophe Grova, Guillaume Marrelec, Jérémie Mattout, Saâd Jbabdi, Mélanie Pélégrini-Issac, Jean-Marc Lina, Habib Benali
Symmetrical event-related EEG/fMRI information fusion in a variational Bayesian framework. NeuroImage 36 (1) (2007)
Pierre Bellec, Vincent Perlbarg, Saâd Jbabdi, Mélanie Pélégrini-Issac, Jean-Luc Anton, Julien Doyon, Habib Benali
Identification of large-scale networks in the brain using fMRI. NeuroImage 29 (4) (2006)
Vincent Perlbarg, Pierre Bellec, Habib Benali, Guillaume Marrelec, Saâd Jbabdi
Selection of Spatially Independent Components to Explain Functional Connectivity In fMRI. ISBI (2004)
Saâd Jbabdi, Pierre Bellec, Guillaume Marrelec, Habib Benali
A Level Set Method for Building Anatomical Connectivity Paths Between Brain Areas Using DTI. ISBI (2004)
Pierre Bellec, Guillaume Marrelec, Vincent Perlbarg, Saâd Jbabdi, Odile Jolivet, Mélanie Pélégrini-Issac, Habib Benali, Julien Doyon
Identification of A Large-Scale Functional Network In Functional Magnetic Resonance Imaging. ISBI (2004)