Neda Jahanshad

ORCID

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 80

Top Venues

ISBI

NeuroImage

CoRR

Medical Imaging: Image Processing

Publications

Jiaying Lin, Zhuoshuo Li, Youbing Zeng, Xiaobo Liu, Liang Li, Neda Jahanshad, Xinting Ge, Dan Zhang, Minhua Lu, Mengting Liu
Harmonizing three-dimensional MRI using pseudo-warping field guided GAN. NeuroImage 295 (2024)
Myrl G. Marmarelis, Elizabeth Haddad, Andrew Jesson, Neda Jahanshad, Aram Galstyan, Greg Ver Steeg
Partial identification of dose responses with hidden confounders. UAI (2023)
Elizabeth Haddad, Myrl G. Marmarelis, Talia M. Nir, Aram Galstyan, Greg Ver Steeg, Neda Jahanshad
Causal Sensitivity Analysis for Hidden Confounding: Modeling the Sex-Specific Role of Diet on the Aging Brain. MLCN@MICCAI (2023)
Yizhou Ma, Mark D. Kvarta, Bhim M. Adhikari, Joshua Chiappelli, Xiaoming Du, Andrew van der Vaart, Eric L. Goldwaser, Heather Bruce, Kathryn S. Hatch, Si Gao, Ann Summerfelt, Neda Jahanshad, Paul M. Thompson, Thomas E. Nichols, L. Elliot Hong, Peter V. Kochunov
Association between brain similarity to severe mental illnesses and comorbid cerebral, physical, and cognitive impairments. NeuroImage 265 (2023)
Iyad Ba Gari, Shayan Javid, Alyssa H. Zhu, Shruti Prashant Gadewar, Siddharth Narula, Abhinaav Ramesh, Sophia I. Thomopoulos, Lachlan T. Strike, Greig I. de Zubicaray, Katie L. McMahon, Margaret J. Wright, Paul M. Thompson, Talia M. Nir, Neda Jahanshad
Along-Tract Parameterization of White Matter Microstructure using Medial Tractography Analysis (MeTA). SIPAIM (2023)
Vladimir Belov, Tracy Erwin-Grabner, Ling-Li Zeng, Christopher R. K. Ching, André Aleman, Alyssa R. Amod, Zeynep Basgoze, Francesco Benedetti, Bianca Besteher, Katharina Brosch, Robin Bülow, Romain Colle, Colm G. Connolly, Emmanuelle Corruble, Baptiste Couvy-Duchesne, Kathryn Cullen, Udo Dannlowski, Christopher G. Davey, Annemiek Dols, Jan Ernsting, Jennifer W. Evans, Lukas Fisch, Paola Fuentes-Claramonte, Ali Saffet Gonul, Ian H. Gotlib, Hans Jörgen Grabe, Nynke A. Groenewold, Dominik Grotegerd, Tim Hahn, J. Paul Hamilton, Laura K. M. Han, Ben J. Harrison, Tiffany C. Ho, Neda Jahanshad, Alec J. Jamieson, Andriana Karuk, Tilo Kircher, Bonnie Klimes-Dougan, Sheri-Michelle Koopowitz, Thomas M. Lancaster, Ramona Leenings, Meng Li, David E. J. Linden, Frank P. MacMaster, David M. A. Mehler, Susanne Meinert, Elisa Melloni, Bryon A. Mueller, Benson Mwangi, Igor Nenadic, Amar Ojha, Yasumasa Okamoto, Mardien L. Oudega, Brenda W. J. H. Penninx, Sara Poletti, Edith Pomarol-Clotet, Maria J. Portella, Elena Pozzi, Joaquim Radua, Elena Rodríguez-Cano, Matthew D. Sacchet, Raymond Salvador, Anouk Schrantee, Kang Sim, Jair C. Soares, Aleix Solanes, Dan J. Stein, Frederike Stein, Aleks Stolicyn, Sophia I. Thomopoulos, Yara J. Toenders, Aslihan Uyar-Demir, Eduard Vieta, Yolanda Vives-Gilabert, Henry Völzke, Martin Walter, Heather C. Whalley, Sarah Whittle, Nils R. Winter, Katharina Wittfeld, Margaret J. Wright, Mon-Ju Wu, Tony T. Yang, Carlos Zarate, Dick J. Veltman, Lianne Schmaal, Paul M. Thompson, Roberto Goya-Maldonado
DenseNet and Support Vector Machine classifications of major depressive disorder using vertex-wise cortical features. CoRR (2023)
Julio E. Villalon-Reina, Talia M. Nir, Elnaz Nourollahimoghadam, Nikhil J. Dhinagar, Neda Jahanshad, Paul M. Thompson, Rafael Neto Henriques
Evaluating Fiber Orientation Dispersion Measures Computed From Single-Shell Diffusion MRI. EMBC (2023)
Xi Zhu, Yoojean Kim, Orren Ravid, Xiaofu He, Benjamin Suarez-Jimenez, Sigal Zilcha-Mano, Amit Lazarov, Seonjoo Lee, Chadi G. Abdallah, Michael Angstadt, Christopher L. Averill, C. Lexi Baird, Lee Baugh, Jennifer Urbano Blackford, Jessica Bomyea, Steven E. Bruce, Richard A. Bryant, Zhihong Cao, Kyle Choi, Josh M. Cisler, Andrew S. Cotton, Judith K. Daniels, Nicholas D. Davenport, Richard J. Davidson, Michael D. DeBellis, Emily L. Dennis, Maria Densmore, Terri A. deRoon-Cassini, Seth G. Disner, Wissam El-Hage, Amit Etkin, Negar Fani, Kelene A. Fercho, Jacklynn M. Fitzgerald, Gina L. Forster, Jessie L. Frijling, Elbert Geuze, Atilla Gonenc, Evan M. Gordon, Staci Gruber, Daniel W. Grupe, Jeffrey P. Guenette, Courtney C. Haswell, Ryan J. Herringa, Julia Herzog, David Bernd Hofmann, Bobak Hosseini, Anna R. Hudson, Ashley A. Huggins, Jonathan C. Ipser, Neda Jahanshad, Meilin Jia-Richards, Tanja Jovanovic, Milissa L. Kaufman, Mitzy Kennis, Anthony King, Philipp Kinzel, Saskia B. J. Koch, Inga Koerte, Sheri-Michelle Koopowitz, Mayuresh S. Korgaonkar, John H. Krystal, Ruth A. Lanius, Christine L. Larson, Lauren A. M. Lebois, Gen Li, Israel Liberzon, Guang Ming Lu, Yifeng Luo, Vincent A. Magnotta, Antje Manthey, Adi Maron-Katz, Geoffery May, Katie McLaughlin, Sven C. Mueller, Laura Nawijn, Steven M. Nelson, Richard W. J. Neufeld, Jack B. Nitschke, Erin M. O'Leary, Bunmi O. Olatunji, Miranda Olff, Matthew Peverill, K. Luan Phan, Rongfeng Qi, Yann Quidé, Ivan Rektor, Kerry J. Ressler, Pavel Riha, Marisa Ross, Isabelle M. Rosso, Lauren E. Salminen, Kelly A. Sambrook, Christian Schmahl, Martha Elizabeth Shenton, Margaret A. Sheridan, Chiahao Shih, Maurizio Sicorello, Anika Sierk, Alan N. Simmons, Raluca M. Simons, Jeffrey S. Simons, Scott R. Sponheim, Murray B. Stein, Dan J. Stein, Jennifer S. Stevens, Thomas Straube, Delin Sun, Jean Théberge, Paul M. Thompson, Sophia I. Thomopoulos, Nic J. A. van der Wee, Steven J. A. van der Werff, Theo G. M. van Erp, Sanne J. H. van Rooij, Mirjam van Zuiden, Tim Varkevisser, Dick J. Veltman, Robert R. J. M. Vermeiren, Henrik Walter, Li Wang, Xin Wang, Carissa N. Weis, Sherry Winternitz, Hong Xie, Ye Zhu, Melanie Wall, Yuval Neria, Rajendra A. Morey
Neuroimaging-based classification of PTSD using data-driven computational approaches: A multisite big data study from the ENIGMA-PGC PTSD consortium. NeuroImage 283 (2023)
Shruti Prashant Gadewar, Elnaz Nourollahimoghadam, Ravi R. Bhatt, Abhinaav Ramesh, Shayan Javid, Iyad Ba Gari, Alyssa H. Zhu, Sophia I. Thomopoulos, Paul M. Thompson, Neda Jahanshad
A Comprehensive Corpus Callosum Segmentation Tool for Detecting Callosal Abnormalities and Genetic Associations from Multi Contrast MRIs. EMBC (2023)
Pritesh R. Jain, Madison Yates, Carlos Rubin de Celis, Petros Drineas, Neda Jahanshad, Paul M. Thompson, Peristera Paschou
Multiomic approach and Mendelian randomization analysis identify causal associations between blood biomarkers and subcortical brain structure volumes. NeuroImage 284 (2023)
André Altmann, Ana C. Lawry Aguila, Neda Jahanshad, Paul M. Thompson, Marco Lorenzi
Tackling the dimensions in imaging genetics with CLUB-PLS. CoRR (2023)
Yan Jin, Jonathan DuBois, Chongyue Zhao, Liang Zhan, Audrey Gabelle, Neda Jahanshad, Paul M. Thompson, Arie Gafson, Shibeshih Mitiku Belachew
Brain MRI to PET Synthesis and Amyloid Estimation in Alzheimer's Disease via 3D Multimodal Contrastive GAN. MLMI@MICCAI (1) (2023)
Ryan J. Cali, Ravi R. Bhatt, Sophia I. Thomopoulos, Shruti Gadewar, Iyad Ba Gari, Tamoghna Chattopadhyay, Neda Jahanshad, Paul M. Thompson
The Influence of Brain MRI Defacing Algorithms on Brain-Age Predictions via 3D Convolutional Neural Networks. EMBC (2023)
Iyad Ba Gari, Abhinaav Ramesh, Shayan Javid, Shruti Prashant Gadewar, Elnaz Nourollahimoghadam, Sophia I. Thomopoulos, Paul M. Thompson, Talia M. Nir, Neda Jahanshad
Medial Tractography Analysis (MeTA) for White Matter Population Analyses Across Datasets. NER (2023)
Shruti Prashant Gadewar, Alyssa H. Zhu, Sunanda Somu, Abhinaav Ramesh, Iyad Ba Gari, Sophia I. Thomopoulos, Paul M. Thompson, Talia M. Nir, Neda Jahanshad
Normative Aging for an Individual's Full Brain MRI Using Style GANs to Detect Localized Neurodegeneration. MLMI@MICCAI (2) (2023)
Eamonn Kennedy, Shashank Vadlamani, Hannah M. Lindsey, Kelly S. Peterson, Kristen Dams OConnor, Kenton Murray, Ronak Agarwal, Houshang H. Amiri, Raeda K. Andersen, Talin Babikian, David A Baron, Erin D. Bigler, Karen Caeyenberghs, Lisa Delano-Wood, Seth G. Disner, Ekaterina Dobryakova, Blessen C. Eapen, Rachel M. Edelstein, Carrie Esopenko, Helen M. Genova, Elbert Geuze, Naomi J. Goodrich-Hunsaker, Jordan Grafman, Asta K. Håberg, Cooper B. Hodges, Kristen R. Hoskinson, Elizabeth S. Hovenden, Andrei Irimia, Neda Jahanshad, Ruchira M. Jha, Finian Keleher, Kimbra Kenney, Inga Koerte, Spencer W. Liebel, Abigail Livny, Marianne Lovstad, Sarah L. Martindale, Jeffrey E. Max, Andrew R. Mayer, Timothy B. Meier, Deleene S. Menefee, Abdalla Z. Mohamed, Stefania Mondello, Martin M. Monti, Rajendra A. Morey, Virginia Newcombe, et al.
Linking Symptom Inventories using Semantic Textual Similarity. CoRR (2023)
Julio E. Villalon-Reina, Alyssa H. Zhu, Talia M. Nir, Sophia I. Thomopoulos, Emily Laltoo, Leila Kushan, Carrie E. Bearden, Neda Jahanshad, Paul M. Thompson
Large-scale Normative Modeling of Brain Microstructure. SIPAIM (2023)
Bhim M. Adhikari, L. Elliot Hong, Zhiwei Zhao, Danny J. J. Wang, Paul M. Thompson, Neda Jahanshad, Alyssa H. Zhu, Stefan Holiga, Jessica A. Turner, Theo G. M. van Erp, Vince D. Calhoun, Kathryn S. Hatch, Heather Bruce, Stephanie M. Hare, Joshua Chiappelli, Eric L. Goldwaser, Mark D. Kvarta, Yizhou Ma, Xiaoming Du, Thomas E. Nichols, Alan R. Shuldiner, Braxton D. Mitchell, Juergen Dukart, Peter V. Kochunov
Cerebral blood flow and cardiovascular risk effects on resting brain regional homogeneity. NeuroImage 262 (2022)
Delin Sun, Gopalkumar Rakesh, Courtney C. Haswell, Mark Logue, C. Lexi Baird, Erin N. O'Leary, Andrew S. Cotton, Hong Xie, Marijo B. Tamburrino, Tian Chen, Emily L. Dennis, Neda Jahanshad, Lauren E. Salminen, Sophia I. Thomopoulos, Faisal Rashid, Christopher R. K. Ching, Saskia B. J. Koch, Jessie L. Frijling, Laura Nawijn, Mirjam van Zuiden, Xi Zhu, Benjamin Suarez-Jimenez, Anika Sierk, Henrik Walter, Antje Manthey, Jennifer S. Stevens, Negar Fani, Sanne J. H. van Rooij, Murray B. Stein, Jessica Bomyea, Inga Koerte, Kyle Choi, Steven J. A. van der Werff, Robert R. J. M. Vermeiren, Julia Herzog, Lauren A. M. Lebois, Justin T. Baker, Elizabeth A. Olson, Thomas Straube, Mayuresh S. Korgaonkar, Elpiniki Andrew, Ye Zhu, Gen Li, Jonathan Ipser, Anna R. Hudson, Matthew Peverill, Kelly A. Sambrook, Evan Gordon, Lee Baugh, Gina Forster, Raluca M. Simons, Jeffrey S. Simons, Vincent Magnotta, Adi Maron-Katz, Stefan du Plessis, Seth G. Disner, Nicholas D. Davenport, Daniel W. Grupe, Jack B. Nitschke, Terri A. deRoon-Cassini, Jacklynn M. Fitzgerald, John H. Krystal, Ifat Levy, Miranda Olff, Dick J. Veltman, Li Wang, Yuval Neria, Michael D. De Bellis, Tanja Jovanovic, Judith K. Daniels, Martha Shenton, Nic J. A. van de Wee, Christian Schmahl, Milissa L. Kaufman, Isabelle M. Rosso, Scott R. Sponheim, David Bernd Hofmann, Richard A. Bryant, Kelene A. Fercho, Dan J. Stein, Sven C. Mueller, Bobak Hosseini, K. Luan Phan, Katie A. McLaughlin, Richard J. Davidson, Christine L. Larson, Geoffrey May, Steven M. Nelson, Chadi G. Abdallah, Hassaan Gomaa, Amit Etkin, Zelekha A. Seedat, Ilan Harpaz-Rotem, Israel Liberzon, Theo G. M. van Erp, Yann Quidé, Xin Wang, Paul M. Thompson, Rajendra A. Morey
A comparison of methods to harmonize cortical thickness measurements across scanners and sites. NeuroImage 261 (2022)
Jessica A. Turner, Vince D. Calhoun, Paul M. Thompson, Neda Jahanshad, Christopher R. K. Ching, Sophia I. Thomopoulos, Eric Verner, Gregory P. Strauss, Anthony O. Ahmed, Matthew D. Turner, Sunitha Basodi, Judith M. Ford, Daniel H. Mathalon, Adrian Preda, Aysenil Belger, Bryon A. Mueller, Kelvin O. Lim, Theo G. M. van Erp
ENIGMA + COINSTAC: Improving Findability, Accessibility, Interoperability, and Re-usability. Neuroinformatics 20 (1) (2022)
Yuji Zhao, Max A. Laansma, Eva M. van Heese, Conor Owens-Walton, Laura M. Parkes, Ines Debove, Christian Rummel, Roland Wiest, Fernando Cendes, Rachel Guimaraes, Clarissa Lin Yasuda, Jiun-Jie Wang, Tim J. Anderson, John C. Dalrymple-Alford, Tracy R. Melzer, Toni L. Pitcher, Reinhold Schmidt, Petra Schwingenschuh, Gaëtan Garraux, Mario Rango, Letizia Squarcina, Sarah Al-Bachari, Hedley C. A. Emsley, Johannes C. Klein, Clare E. Mackay, Michiel F. Dirkx, Rick C. Helmich, Francesca Assogna, Fabrizio Piras, Joanna K. Bright, Gianfranco Spalletta, Kathleen Poston, Christine Lochner, Corey T. McMillan, Daniel Weintraub, Jason Druzgal, Benjamin Newman, Odile A. van den Heuvel, Neda Jahanshad, Paul M. Thompson, Ysbrand D. van der Werf, Boris Gutman
Learning Interpretable Regularized Ordinal Models from 3D Mesh Data for Neurodegenerative Disease Staging. MLCN@MICCAI (2022)
Elizabeth Haddad, Shayan Javid, Nikhil Dhinagar, Alyssa H. Zhu, Pradeep Lam, Iyad Ba Gari, Arpana Gupta, Paul M. Thompson, Talia M. Nir, Neda Jahanshad
Lifestyle Factors That Promote Brain Structural Resilience in Individuals with Genetic Risk Factors for Dementia. MLCN@MICCAI (2022)
Julio E. Villalon-Reina, Clara Moreau, Talia M. Nir, Neda Jahanshad, Anne M. Maillard, David Romascano, Bogdan Draganski, Sarah Lippé, Carrie E. Bearden, Seyed Mostafa Kia, Andre F. Marquand, Sébastien Jacquemont, Paul M. Thompson
Multi-site Normative Modeling of Diffusion Tensor Imaging Metrics Using Hierarchical Bayesian Regression. MICCAI (1) (2022)
Talia M. Nir, Julio E. Villalon-Reina, Paul M. Thompson, Neda Jahanshad
The Impact of Susceptibility Distortion Correction Protocols on Adolescent Diffusion MRI Measures. CDMRI@MICCAI (2022)
Rosita Shishegar, Fabrizio Pizzagalli, Nellie Georgiou-Karistianis, Gary F. Egan, Neda Jahanshad, Leigh A. Johnston
A gyrification analysis approach based on Laplace Beltrami eigenfunction level sets. NeuroImage 229 (2021)
Eleonora Ficiarà, Valentino Crespi, Shruti Prashant Gadewar, Sophia I. Thomopoulos, Joshua Boyd, Paul M. Thompson, Neda Jahanshad, Fabrizio Pizzagalli
Predicting Progression from Mild Cognitive Impairment to Alzheimer's Disease using MRI-based Cortical Features and a Two-State Markov Model. ISBI (2021)
Si Gao, Brian Donohue, Kathryn S. Hatch, Shuo Chen, Tianzhou Ma, Yizhou Ma, Mark D. Kvarta, Heather Bruce, Bhim M. Adhikari, Neda Jahanshad, Paul M. Thompson, John Blangero, L. Elliot Hong, Sarah E. Medland, Habib Ganjgahi, Thomas E. Nichols, Peter V. Kochunov
Comparing empirical kinship derived heritability for imaging genetics traits in the UK biobank and human connectome project. NeuroImage 245 (2021)
Shruti Gadewar, Alyssa H. Zhu, Sophia I. Thomopoulos, Zhuocheng Li, Iyad Ba Gari, Piyush Maiti, Paul M. Thompson, Neda Jahanshad
Region Specific Automatic Quality Assurance For MRI-Derived Cortical Segmentations. ISBI (2021)
Alyssa H. Zhu, Paul M. Thompson, Neda Jahanshad
Age-Related Heterochronicity Of Brain Morphometry May Bias Voxelwise Findings. ISBI (2021)
Mengting Liu, Piyush Maiti, Sophia I. Thomopoulos, Alyssa H. Zhu, Yaqiong Chai, Hosung Kim, Neda Jahanshad
Style Transfer Using Generative Adversarial Networks for Multi-site MRI Harmonization. MICCAI (3) (2021)
Ling-Li Zeng, Christopher R. K. Ching, Zvart Abaryan, Sophia I. Thomopoulos, Kai Gao, Alyssa H. Zhu, Anjanibhargavi Ragothaman, Faisal Rashid, Marc Harrison, Lauren E. Salminen, Brandalyn C. Riedel, Neda Jahanshad, Dewen Hu, Paul M. Thompson
A Deep Transfer Learning Framework for 3D Brain Imaging Based on Optimal Mass Transport. MLCN/RNO-AI@MICCAI (2020)
Anvar Kurmukov, Ayagoz Mussabaeva, Yulia Denisova, Daniel Moyer, Neda Jahanshad, Paul M. Thompson, Boris A. Gutman
Optimizing Connectivity-Driven Brain Parcellation Using Ensemble Clustering. Brain Connect. 10 (4) (2020)
Yolanda Gil, James Honaker, Shikhar Gupta, Yibo Ma, Vito D'Orazio, Daniel Garijo, Shruti Gadewar, Qifan Yang, Neda Jahanshad
Towards human-guided machine learning. IUI (2019)
Artemis Zavaliangos-Petropulu, Talia M. Nir, Sophia I. Thomopoulos, Robert I. Reid, Matt A. Bernstein, Bret J. Borowski, Clifford R. Jack Jr., Michael W. Weiner, Neda Jahanshad, Paul M. Thompson
Diffusion MRI Indices and Their Relation to Cognitive Impairment in Brain Aging: The Updated Multi-protocol Approach in ADNI3. Frontiers Neuroinformatics 13 (2019)
Neda Jahanshad, Joshua Faskowitz, Gennady V. Roshchupkin, Derrek P. Hibar, Boris A. Gutman, Nicholas J. Tustison, Hieab H. Adams, Wiro J. Niessen, Meike W. Vernooij, Mohammad Arfan Ikram, Marcel P. Zwiers, Alejandro Arias-Vasquez, Barbara Franke, Jennifer L. Kroll, Benson Mwangi, Jair C. Soares, Alex Ing, Sylvane Desrivières, Gunter Schumann, Narelle K. Hansell, Greig I. de Zubicaray, Katie L. McMahon, Nicholas G. Martin, Margaret J. Wright, Paul M. Thompson
Multi-Site Meta-Analysis of Morphometry. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (5) (2019)
Sook-Lei Liew, Lianne Schmaal, Neda Jahanshad
Editorial: Collaborative Efforts for Understanding the Human Brain. Frontiers Neuroinformatics 13 (2019)
Daniel Garijo, Shobeir Fakhraei, Varun Ratnakar, Qifan Yang, Hanna Endrias, Yibo Ma, Regina Wang, Michael Bornstein, Joanna Bright, Yolanda Gil, Neda Jahanshad
Towards Automated Hypothesis Testing in Neuroscience. Poly/DMAH@VLDB (2019)
Qifan Yang, Sophia I. Thomopoulos, Linda Ding, Wesley Surento, Paul M. Thompson, Neda Jahanshad
Support Vector Based Autoregressive Mixed Models of Longitudinal Brain Changes and Corresponding Genetics in Alzheimer's Disease. PRIME@MICCAI (2019)
Talia M. Nir, Sophia I. Thomopoulos, Julio E. Villalon-Reina, Artemis Zavaliangos-Petropulu, Emily L. Dennis, Robert I. Reid, Matt A. Bernstein, Bret J. Borowski, Clifford R. Jack, Michael W. Weiner, Neda Jahanshad, Paul M. Thompson
Multi-Shell Diffusion MRI Measures of Brain Aging: A Preliminary Comparison From ADNI3. ISBI (2019)
Emily L. Dennis, Ananya Singh, Conor K. Corbin, Neda Jahanshad, Tiffany C. Ho, Lucy S. King, Lauren R. Borchers, Kathryn L. Humphreys, Paul M. Thompson, Ian H. Gotlib
Associations Between Maternal Depression and Infant Fronto-Limbic Connectivity. ISBI (2019)
Peter V. Kochunov, Binish Patel, Habib Ganjgahi, Brian Donohue, Meghann Ryan, L. Elliot Hong, Xu Chen, Bhim M. Adhikari, Neda Jahanshad, Paul M. Thompson, Dennis van 't Ent, Anouk den Braber, Eco J. C. de Geus, Rachel M. Brouwer, Dorret I. Boomsma, Hilleke E. Hulshoff Pol, Greig I. de Zubicaray, Katie L. McMahon, Nicholas G. Martin, Margaret J. Wright, Thomas E. Nichols
Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data. Frontiers Neuroinformatics 13 (2019)
Premika S. W. Boedhoe, Martijn W. Heymans, Lianne Schmaal, Yoshinari Abe, Pino Alonso, Stephanie H. Ameis, Alan Anticevic, Paul D. Arnold, Marcelo C. Batistuzzo, Francesco Benedetti, Jan Carl Beucke, Irene Bollettini, Anushree Bose, Silvia Brem, Anna Calvo, Rosa Calvo, Yuqi Cheng, Kang Ik Kevin Cho, Valentina Ciullo, Sara Dallaspezia, Damiaan Denys, Jamie D. Feusner, Kate Dimond Fitzgerald, Jean-Paul Fouche, Egill A. Fridgeirsson, Patricia Gruner, Gregory L. Hanna, Derrek P. Hibar, Marcelo Queiroz Hoexter, Hao Hu, Chaim Huyser, Neda Jahanshad, Anthony James, Norbert Kathmann, Christian Kaufmann, Kathrin Koch, Jun Soo Kwon, Luisa Lazaro, Christine Lochner, Rachel Marsh, Ignacio Martínez-Zalacaín, David Mataix-Cols, José M. Menchón, Luciano Minuzzi, Astrid Morer, Takashi Nakamae, Tomohiro Nakao, Janardhanan C. Narayanaswamy, Seiji Nishida, Erika L. Nurmi, Joseph O'Neill, John Piacentini, Fabrizio Piras, Federica Piras, Y. C. Janardhan Reddy, Tim Jonas Reess, Yuki Sakai, João R. Sato, H. Blair Simpson, Noam Soreni, Carles Soriano-Mas, Gianfranco Spalletta, Michael C. Stevens, Philip R. Szeszko, David F. Tolin, Guido A. van Wingen, Ganesan Venkatasubramanian, Susanne Walitza, Zhen Wang, Je-Yeon Yun, ENIGMA-OCD Working-Group, Paul M. Thompson, Dan J. Stein, Odile A. van den Heuvel, Jos W. R. Twisk
An Empirical Comparison of Meta- and Mega-Analysis With Data From the ENIGMA Obsessive-Compulsive Disorder Working Group. Frontiers Neuroinformatics 12 (2018)
Bhim M. Adhikari, Neda Jahanshad, Dinesh Shukla, David C. Glahn, John Blangero, Richard C. Reynolds, Robert W. Cox, Els Fieremans, Jelle Veraart, Dmitry S. Novikov, Thomas E. Nichols, L. Elliot Hong, Paul M. Thompson, Peter V. Kochunov
Heritability estimates on resting state fMRI data using the ENIGMA analysis pipeline. PSB (2018)
Marco Lorenzi, André Altmann, Boris Gutman, Selina Wray, Charles Arber, Derrek P. Hibar, Neda Jahanshad, Jonathan M. Schott, Daniel C. Alexander, Paul M. Thompson, Sébastien Ourselin
in Alzheimer's disease, evidence from functional prioritization in imaging genetics. Proc. Natl. Acad. Sci. USA 115 (12) (2018)
Dmitry Petrov, Boris Gutman, Alexander Ivanov, Joshua Faskowitz, Neda Jahanshad, Mikhail Belyaev, Paul M. Thompson
Structural connectome validation using pairwise classification. ISBI (2017)
Daniel Moyer, Boris A. Gutman, Neda Jahanshad, Paul M. Thompson
A Restaurant Process Mixture Model for Connectivity Based Parcellation of the Cortex. CoRR (2017)
Qingyang Li, Dajiang Zhu, Jie Zhang, Derrek Paul Hibar, Neda Jahanshad, Yalin Wang, Jieping Ye, Paul M. Thompson, Jie Wang
Large-scale Feature Selection of Risk Genetic Factors for Alzheimer's Disease via Distributed Group Lasso Regression. CoRR (2017)
Mihyun Jang, Tejal Patted, Yolanda Gil, Daniel Garijo, Varun Ratnakar, Jie Ji, Prince Wang, Aggie McMahon, Paul M. Thompson, Neda Jahanshad
Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata. SemSci@ISWC (2017)
Emily L. Dennis, Faisal Rashid, Joshua Faskowitz, Yan Jin, Katie L. McMahon, Greig I. de Zubicaray, Nicholas G. Martin, Ian B. Hickie, Margaret J. Wright, Neda Jahanshad, Paul M. Thompson
Mapping age effects along fiber tracts in young adults. ISBI (2017)
Anvar Kurmukov, Marina Ananyeva, Yulia Dodonova, Boris Gutman, Joshua Faskowitz, Neda Jahanshad, Paul M. Thompson, Leonid Zhukov
Classifying Phenotypes Based on the Community Structure of Human Brain Networks. GRAIL/MFCA/MICGen@MICCAI (2017)
Dmitry Petrov, Alexander Ivanov, Joshua Faskowitz, Boris Gutman, Daniel Moyer, Julio Villalon, Neda Jahanshad, Paul M. Thompson
Evaluating 35 Methods to Generate Structural Connectomes Using Pairwise Classification. MICCAI (1) (2017)
Brandalyn C. Riedel, Neda Jahanshad, Paul M. Thompson
Graph theoretical approaches towards understanding differences in frontoparietal and default mode networks in Autism. ISBI (2017)
Nikita Mokrov, Maxim Panov, Boris A. Gutman, Joshua I. Faskowitz, Neda Jahanshad, Paul M. Thompson
Simultaneous Matrix Diagonalization for Structural Brain Networks Classification. COMPLEX NETWORKS (2017)
Boris A. Gutman, Fabrizio Pizzagalli, Neda Jahanshad, Margaret J. Wright, Katie L. McMahon, Greig I. de Zubicaray, Paul M. Thompson
Approximating principal genetic components of subcortical shape. ISBI (2017)
Dajiang Zhu, Brandalyn C. Riedel, Neda Jahanshad, Nynke A. Groenewold, Dan J. Stein, Ian H. Gotlib, Matthew D. Sacchet, Danai Dima, James H. Cole, Cynthia H. Y. Fu, Henrik Walter, Ilya M. Veer, Thomas Frodl, Lianne Schmaal, Dick J. Veltman, Paul M. Thompson
Classification of Major Depressive Disorder via Multi-site Weighted LASSO Model. MICCAI (3) (2017)
Dmitry Petrov, Boris Gutman, Alexander Ivanov, Joshua Faskowitz, Neda Jahanshad, Mikhail Belyaev, Paul M. Thompson
Structural Connectome Validation Using Pairwise Classification. CoRR (2017)
George W. Hafzalla, Anjanibhargavi Ragothaman, Joshua Faskowitz, Neda Jahanshad, Katie L. McMahon, Greig I. de Zubicaray, Margaret J. Wright, Meredith N. Braskie, Gautam Prasad, Paul M. Thompson
A comparison of network definitions for detecting sex differences in brain connectivity using Support Vector Machines. ISBI (2017)
Guohao Zhang, Peter V. Kochunov, L. Elliot Hong, Sinead Kelly, Christopher D. Whelan, Neda Jahanshad, Paul M. Thompson, Jian Chen
ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis. BMC Bioinform. 18 (6) (2017)
Mark S. Shiroishi, Vikash Gupta, Bavrina Bigjahan, Steven Y. Cen, Faisal Rashid, Darryl H. Hwang, Alexander Lerner, Orest B. Boyko, Chia-Shang Jason Liu, Meng Law, Paul M. Thompson, Neda Jahanshad
Brain cortical structural differences between non-central nervous system cancer patients treated with and without chemotherapy compared to non-cancer controls: a cross-sectional pilot MRI study using clinically indicated scans. SIPAIM (2017)
Daniel Moyer, Boris A. Gutman, Joshua Faskowitz, Neda Jahanshad, Paul M. Thompson
Continuous representations of brain connectivity using spatial point processes. Medical Image Anal. 41 (2017)
Emily L. Dennis, Faisal Rashid, Neda Jahanshad, Talin Babikian, Richard Mink, Christopher Babbitt, Jeffrey Johnson, Christopher C. Giza, Robert F. Asarnow, Paul M. Thompson
A network approach to examining injury severity in pediatric TBI. ISBI (2017)
Dajiang Zhu, Brandalyn C. Riedel, Neda Jahanshad, Nynke A. Groenewold, Dan J. Stein, Ian H. Gotlib, Danai Dima, James H. Cole, Cynthia H. Y. Fu, Henrik Walter, Ilya M. Veer, Thomas Frodl, Lianne Schmaal, Dick J. Veltman, Paul M. Thompson
Classification of Major Depressive Disorder via Multi-Site Weighted LASSO Model. CoRR (2017)
Dmitry Petrov, Alexander Ivanov, Joshua Faskowitz, Boris Gutman, Daniel Moyer, Julio Villalon, Neda Jahanshad, Paul M. Thompson
Evaluating 35 Methods to Generate Structural Connectomes Using Pairwise Classification. CoRR (2017)
Daniel Moyer, Boris A. Gutman, Neda Jahanshad, Paul M. Thompson
A Restaurant Process Mixture Model for Connectivity Based Parcellation of the Cortex. IPMI (2017)
Daniel Moyer, Boris A. Gutman, Neda Jahanshad, Paul M. Thompson
Product Space Decompositions for Continuous Representations of Brain Connectivity. MLMI@MICCAI (2017)
Joshua Faskowitz, Greig I. de Zubicaray, Katie L. McMahon, Margaret J. Wright, Paul M. Thompson, Neda Jahanshad
Comparison of template registration methods for multi-site meta-analysis of brain morphometry. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging (2016)
Guohao Zhang, Peter V. Kochunov, L. Elliot Hong, Neda Jahanshad, Paul M. Thompson, Jian Chen
ENIGMA-Viewer: Interactive Visualization Strategies for Conveying Effect Sizes in Meta-Analysis. BCB (2016)
George W. Hafzalla, Gautam Prasad, Vatche G. Baboyan, Joshua Faskowitz, Neda Jahanshad, Katie L. McMahon, Greig I. de Zubicaray, Margaret J. Wright, Meredith N. Braskie, Paul M. Thompson
The heritability of the functional connectome is robust to common nonlinear registration methods. Medical Imaging: Image Processing (2016)
Daniel Moyer, Boris A. Gutman, Joshua Faskowitz, Neda Jahanshad, Paul M. Thompson
A Continuous Model of Cortical Connectivity. CoRR (2016)
Qingyang Li, Tao Yang, Liang Zhan, Derrek P. Hibar, Neda Jahanshad, Yalin Wang, Jieping Ye, Paul M. Thompson, Jie Wang
Large-scale Collaborative Imaging Genetics Studies of Risk Genetic Factors for Alzheimer's Disease Across Multiple Institutions. CoRR (2016)
Daniel Moyer, Boris A. Gutman, Joshua Faskowitz, Neda Jahanshad, Paul M. Thompson
A Continuous Model of Cortical Connectivity. MICCAI (1) (2016)
Marco Lorenzi, Boris Gutman, Derrek P. Hibar, André Altmann, Neda Jahanshad, Paul M. Thompson, Sébastien Ourselin
Partial least squares modelling for imaging-genetics in Alzheimer's disease: Plausibility and generalization. ISBI (2016)
Qingyang Li, Tao Yang, Liang Zhan, Derrek P. Hibar, Neda Jahanshad, Yalin Wang, Jieping Ye, Paul M. Thompson, Jie Wang
Large-Scale Collaborative Imaging Genetics Studies of Risk Genetic Factors for Alzheimer's Disease Across Multiple Institutions. MICCAI (1) (2016)
Christopher D. Whelan, Derrek P. Hibar, Laura S. van Velzen, Anthony S. Zannas, Tania Carrillo-Roa, Katie McMahon, Gautam Prasad, Sinead Kelly, Joshua Faskowitz, Greig I. de Zubicaray, Juan Eugenio Iglesias, Theo G. M. van Erp, Thomas Frodl, Nicholas G. Martin, Margaret J. Wright, Neda Jahanshad, Lianne Schmaal, Philipp G. Sämann, Paul M. Thompson
Heritability and reliability of automatically segmented human hippocampal formation subregions. NeuroImage 128 (2016)
Fabrizio Pizzagalli, Guillaume Auzias, Peter V. Kochunov, Joshua I. Faskowitz, Katie L. McMahon, Greig I. de Zubicaray, Nicholas G. Martin, Margaret J. Wright, Neda Jahanshad, Paul M. Thompson
Genetic analysis of cortical sulci in 1, 009 adults. ISBI (2016)
Daniel Moyer, Boris A. Gutman, Joshua Faskowitz, Neda Jahanshad, Paul M. Thompson
An Empirical Study of Continuous Connectivity Degree Sequence Equivalents. CoRR (2016)
Peter V. Kochunov, Paul M. Thompson, Anderson M. Winkler, Mary Morrissey, Mao Fu, Thomas R. Coyle, Xiaoming Du, Florian Muellerklein, Anya Savransky, Christopher Gaudiot, Hemalatha Sampath, George Eskandar, Neda Jahanshad, Binish Patel, Laura Rowland, Thomas E. Nichols, Jeffrey R. O'Connell, Alan R. Shuldiner, Braxton D. Mitchell, L. Elliot Hong
The common genetic influence over processing speed and white matter microstructure: Evidence from the Old Order Amish and Human Connectome Projects. NeuroImage 125 (2016)
Dajiang Zhu, Neda Jahanshad, Brandalyn C. Riedel, Liang Zhan, Joshua Faskowitz, Gautam Prasad, Paul M. Thompson
Population learning of structural connectivity by white matter encoding and decoding. ISBI (2016)
Sarah K. Madsen, Greg Ver Steeg, Madelaine Daianu, Adam Mezher, Neda Jahanshad, Talia M. Nir, Xue Hua, Boris A. Gutman, Aram Galstyan, Paul M. Thompson
Relative value of diverse brain MRI and blood-based biomarkers for predicting cognitive decline in the elderly. Medical Imaging: Image Processing (2016)
Talia M. Nir, Artemis Zavaliangos-Petropulu, Neda Jahanshad, Julio Villalon-Reina, Liang Zhan, Alex D. Leow, Matt A. Bernstein, Clifford R. Jack, Michael W. Weiner, Paul M. Thompson
Diffusion tensor distribution function metrics boost power to detect deficits in Alzheimer's disease. ISBI (2016)
Ayse Demirhan, Talia M. Nir, Artemis Zavaliangos-Petropulu, Clifford R. Jack, Michael W. Weiner, Matt A. Bernstein, Paul M. Thompson, Neda Jahanshad
Feature selection improves the accuracy of classifying Alzheimer disease using diffusion tensor images. ISBI (2015)
Madelaine Daianu, Greg Ver Steeg, Adam Mezher, Neda Jahanshad, Talia M. Nir, Xiaoran Yan, Gautam Prasad, Kristina Lerman, Aram Galstyan, Paul M. Thompson
Information-Theoretic Clustering of Neuroimaging Metrics Related to Cognitive Decline in the Elderly. MCV@MICCAI (2015)
Liang Zhan, Neda Jahanshad, Joshua Faskowitz, Dajiang Zhu, Gautam Prasad, Nicholas G. Martin, Greig I. de Zubicaray, Katie L. McMahon, Margaret J. Wright, Paul M. Thompson
Heritability of brain network topology in 853 twins and siblings. ISBI (2015)
Madelaine Daianu, Neda Jahanshad, Julio Villalon-Reina, Gautam Prasad, Russell E. Jacobs, Samuel Barnes, Berislav Zlokovic, Axel Montagne, Paul M. Thompson
7T multi-shell hybrid diffusion imaging (HYDI) for mapping brain connectivity in mice. Medical Imaging: Image Processing (2015)
Madelaine Daianu, Adam Mezher, Neda Jahanshad, Derrek P. Hibar, Talia M. Nir, Clifford R. Jack Jr., Michael W. Weiner, Matt A. Bernstein, Paul M. Thompson
Spectral graph theory and graph energy metrics show evidence for the alzheimer's disease disconnection syndrome in APOE-4 risk gene carriers. ISBI (2015)
Sarah K. Madsen, Greg Ver Steeg, Adam Mezher, Neda Jahanshad, Talia M. Nir, Xue Hua, Boris A. Gutman, Aram Galstyan, Paul M. Thompson
Information-theoretic characterization of blood panel predictors for brain atrophy and cognitive decline in the elderly. ISBI (2015)
Dajiang Zhu, Liang Zhan, Joshua Faskowitz, Madelaine Daianu, Neda Jahanshad, Greig I. de Zubicaray, Katie L. McMahon, Nicholas G. Martin, Margaret J. Wright, Paul M. Thompson
Genetic analysis of structural brain connectivity using DICCCOL models of diffusion MRI in 522 twins. ISBI (2015)
Madelaine Daianu, Neda Jahanshad, Mario F. Mendez, George Bartzokis, Elvira E. Jimenez, Paul M. Thompson
Communication of brain network core connections altered in behavioral variant frontotemporal dementia but possibly preserved in early-onset Alzheimer's disease. Medical Imaging: Image Processing (2015)
Michelle Hromatka, Miaomiao Zhang, Greg M. Fleishman, Boris Gutman, Neda Jahanshad, Paul M. Thompson, P. Thomas Fletcher
A Hierarchical Bayesian Model for Multi-Site Diffeomorphic Image Atlases. MICCAI (2) (2015)
Tao Yang, Jie Wang, Qian Sun, Derrek P. Hibar, Neda Jahanshad, Li Liu, Yalin Wang, Liang Zhan, Paul M. Thompson, Jieping Ye
Detecting genetic risk factors for Alzheimer's disease in whole genome sequence data via Lasso screening. ISBI (2015)
Boris A. Gutman, Neda Jahanshad, Christopher R. K. Ching, Yalin Wang, Peter V. Kochunov, Thomas E. Nichols, Paul M. Thompson
Medial demons registration localizes the degree of genetic influence over subcortical shape variability: An N= 1480 meta-analysis. ISBI (2015)
Peter V. Kochunov, Neda Jahanshad, Daniel S. Marcus, Anderson M. Winkler, Emma Sprooten, Thomas E. Nichols, Susan N. Wright, L. Elliot Hong, Binish Patel, Timothy Behrens, Saâd Jbabdi, Jesper L. R. Andersson, Christophe Lenglet, Essa Yacoub, Steen Moeller, Eddie Auerbach, Kamil Ugurbil, Stamatios N. Sotiropoulos, Rachel M. Brouwer, Bennett A. Landman, Hervé Lemaître, Anouk den Braber, Marcel P. Zwiers, Stuart Ritchie, Kimm van Hulzen, Laura Almasy, Joanne E. Curran, Greig I. de Zubicaray, Ravi Duggirala, Peter T. Fox
Heritability of fractional anisotropy in human white matter: A comparison of Human Connectome Project and ENIGMA-DTI data. NeuroImage 111 (2015)
Neda Jahanshad, Peter V. Kochunov, Emma Sprooten, René C. W. Mandl, Thomas E. Nichols, Laura Almasy, John Blangero, Rachel M. Brouwer, Joanne E. Curran, Greig I. de Zubicaray, Ravindranath Duggirala, Peter T. Fox, L. Elliot Hong, Bennett A. Landman, Nicholas G. Martin, Katie L. McMahon, Sarah E. Medland, Braxton D. Mitchell, Rene L. Olvera, Charles P. Peterson, John M. Starr, Jessika E. Sussmann, Arthur W. Toga, Joanna M. Wardlaw, Margaret J. Wright, Hilleke E. Hulshoff Pol, Mark E. Bastin, Andrew M. McIntosh, Ian J. Deary, Paul M. Thompson
Corrigendum to "Multi-site genetic analysis of diffusion images and voxelwise heritability analysis: A pilot project of the ENIGMA-DTI working group" [NeuroImage 81 (2013) 455-469]. NeuroImage 90 (2014)
Kristian Eschenburg, Julio Villalon-Reina, Neda Jahanshad, Talia M. Nir, Madelaine Daianu, Anand A. Joshi, Cassandra D. Leonardo, Stella de Bode, Susan Y. Bookheimer, Noriko Salamon, Paul M. Thompson
Analysis of structural brain connectivity in 6 cases of hemispherectomy. ISBI (2014)
Daniel Garijo, Óscar Corcho, Yolanda Gil, Meredith N. Braskie, Derrek P. Hibar, Xue Hua, Neda Jahanshad, Paul M. Thompson, Arthur W. Toga
Workflow Reuse in Practice: A Study of Neuroimaging Pipeline Users. eScience (2014)
Gautam Prasad, Shantanu H. Joshi, Neda Jahanshad, Julio Villalon-Reina, Iman Aganj, Christophe Lenglet, Guillermo Sapiro, Katie L. McMahon, Greig I. de Zubicaray, Nicholas G. Martin, Margaret J. Wright, Arthur W. Toga, Paul M. Thompson
Automatic clustering and population analysis of white matter tracts using maximum density paths. NeuroImage 97 (2014)
Boris Gutman, Cassandra D. Leonardo, Neda Jahanshad, Derrek P. Hibar, Kristian Eschenburg, Talia M. Nir, Julio Villalon, Paul M. Thompson
Registering Cortical Surfaces Based on Whole-Brain Structural Connectivity and Continuous Connectivity Analysis. MICCAI (3) (2014)
Nicholus M. Warstadt, Neda Jahanshad, Emily L. Dennis, Omid Kohannim, Katie McMahon, Greig I. de Zubicaray, Grant W. Montgomery, Anjali K. Henders, Nicholas G. Martin, John B. Whitfield, Margaret J. Wright, Paul M. Thompson
Identifying candidate gene effects by restricting search space in a multivariate genetic analysis of white matter microstructure. ISBI (2014)
Emily L. Dennis, Neda Jahanshad, Meredith N. Braskie, Nicholus M. Warstadt, Derrek P. Hibar, Omid Kohannim, Talia M. Nir, Katie L. McMahon, Greig I. de Zubicaray, Grant W. Montgomery, Nicholas G. Martin, Arthur W. Toga, Margaret J. Wright, Paul M. Thompson
Obesity gene NEGR1 associated with white matter integrity in healthy young adults. NeuroImage 102 (2014)
G. K. Reynolds, Talia M. Nir, Neda Jahanshad, Gautam Prasad, Paul M. Thompson
Using the raw diffusion MRI signal and the von Mises-Fisher distribution for classification of Alzheimer's disease. ISBI (2014)

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