Mohammad Arfan Ikram

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 40

Top Topics

Transfer Learning

Weakly Supervised

Top Venues

Medical Image Anal.

Publications

Carole H. Sudre, Kimberlin M. H. van Wijnen, Florian Dubost, Hieab Adams, David Atkinson, Frederik Barkhof, Mahlet A. Birhanu, Esther E. Bron, Robin Camarasa, Nish Chaturvedi, Yuan Chen, Zihao Chen, Shuai Chen, Qi Dou, Tavia E. Evans, Ivan Ezhov, Haojun Gao, Marta Gironés-Sangüesa, Juan Domingo Gispert, Beatriz Gomez Anson, Alun D. Hughes, Mohammad Arfan Ikram, Silvia Ingala, Hans Rolf Jäger, Florian Kofler, Hugo J. Kuijf, Denis Kutnar, Minho Lee, Bo Li, Luigi Lorenzini, Bjoern H. Menze, José Luis Molinuevo, Yiwei Pan, Élodie Puybareau, Rafael Rehwald, Ruisheng Su, Pengcheng Shi, Lorna Smith, Therese Tillin, Guillaume Tochon, Hélène Urien, Bas H. M. van der Velden, Isabelle F. van der Velpen, Benedikt Wiestler, Frank J. Wolters, Pinar Yilmaz, Marius de Groot, Meike W. Vernooij, Marleen de Bruijne
VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021. Medical Image Anal. 91 (2024)
Carole H. Sudre, Kimberlin M. H. van Wijnen, Florian Dubost, Hieab Adams, David Atkinson, Frederik Barkhof, Mahlet A. Birhanu, Esther E. Bron, Robin Camarasa, Nish Chaturvedi, Yuan Chen, Zihao Chen, Shuai Chen, Qi Dou, Tavia E. Evans, Ivan Ezhov, Haojun Gao, Marta Gironés-Sangüesa, Juan Domingo Gispert, Beatriz Gomez Anson, Alun D. Hughes, Mohammad Arfan Ikram, Silvia Ingala, Hans Rolf Jäger, Florian Kofler, Hugo J. Kuijf, Denis Kutnar, Minho Lee, Bo Li, Luigi Lorenzini, Bjoern H. Menze, José Luis Molinuevo, Yiwei Pan, Élodie Puybareau, Rafael Rehwald, Ruisheng Su, Pengcheng Shi, Lorna Smith, Therese Tillin, Guillaume Tochon, Hélène Urien, Bas H. M. van der Velden, Isabelle F. van der Velpen, Benedikt Wiestler, Frank J. Wolters, Pinar Yilmaz, Marius de Groot, Meike W. Vernooij, Marleen de Bruijne
Where is VALDO? VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021. CoRR (2022)
Vikram Venkatraghavan, Elisabeth J. Vinke, Esther E. Bron, Wiro J. Niessen, Mohammad Arfan Ikram, Stefan Klein, Meike W. Vernooij
Progression along data-driven disease timelines is predictive of Alzheimer's disease in a population-based cohort. NeuroImage 238 (2021)
Bo Li, Wiro J. Niessen, Stefan Klein, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
Learning unbiased group-wise registration (LUGR) and joint segmentation: evaluation on longitudinal diffusion MRI. Medical Imaging: Image Processing (2021)
Wyke Huizinga, Dirk H. J. Poot, Elisabeth J. Vinke, F. Wenzel, Esther Bron, N. Toussaint, C. Ledig, Henri A. Vrooman, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Stefan Klein
Differences Between MR Brain Region Segmentation Methods: Impact on Single-Subject Analysis. Frontiers Big Data 4 (2021)
Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
Longitudinal diffusion MRI analysis using Segis-Net: A single-step deep-learning framework for simultaneous segmentation and registration. NeuroImage 235 (2021)
Georgius A. M. Arkesteijn, Dirk H. J. Poot, Mohammad Arfan Ikram, Wiro J. Niessen, Lucas J. van Vliet, Meike W. Vernooij, Frans M. Vos
Orientation Prior and Consistent Model Selection Increase Sensitivity of Tract-Based Spatial Statistics in Crossing-Fiber Regions. IEEE Trans. Medical Imaging 39 (2) (2020)
Hakim C. Achterberg, Johan J. de Rooi, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen, Paul H. C. Eilers, Marleen de Bruijne
Spatially Regularized Shape Analysis of the Hippocampus Using P-Spline Based Shape Regression. IEEE J. Biomed. Health Informatics 24 (3) (2020)
Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
Longitudinal diffusion MRI analysis using Segis-Net: a single-step deep-learning framework for simultaneous segmentation and registration. CoRR (2020)
Bo Li, Wiro J. Niessen, Stefan Klein, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
Learning unbiased registration and joint segmentation: evaluation on longitudinal diffusion MRI. CoRR (2020)
Sander Lamballais, Elisabeth J. Vinke, Meike W. Vernooij, Mohammad Arfan Ikram, Ryan L. Muetzel
Cortical gyrification in relation to age and cognition in older adults. NeuroImage 212 (2020)
Bo Li, Marius de Groot, Rebecca M. E. Steketee, Rozanna Meijboom, Marion Smits, Meike W. Vernooij, Mohammad Arfan Ikram, Jiren Liu, Wiro J. Niessen, Esther E. Bron
Neuro4Neuro: A neural network approach for neural tract segmentation using large-scale population-based diffusion imaging. NeuroImage 218 (2020)
Florian Dubost, Hieab Adams, Pinar Yilmaz, Gerda Bortsova, Gijs van Tulder, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
Weakly supervised object detection with 2D and 3D regression neural networks. Medical Image Anal. 65 (2020)
Bo Li, Marius de Groot, Rebecca M. E. Steketee, Rozanna Meijboom, Marion Smits, Meike W. Vernooij, Mohammad Arfan Ikram, Jiren Liu, Wiro J. Niessen, Esther E. Bron
Neuro4Neuro: A neural network approach for neural tract segmentation using large-scale population-based diffusion imaging. CoRR (2020)
Natalia Vilor-Tejedor, Mohammad Arfan Ikram, Gennady V. Roshchupkin, Alejandro Cáceres, Silvia Alemany, Meike W. Vernooij, Wiro J. Niessen, Cornelia M. van Duijn, Jordi Sunyer, Hieab H. Adams, Juan R. González
Independent Multiple Factor Association Analysis for Multiblock Data in Imaging Genetics. Neuroinformatics 17 (4) (2019)
Kimberlin M. H. van Wijnen, Florian Dubost, Pinar Yilmaz, Mohammad Arfan Ikram, Wiro J. Niessen, Hieab H. Adams, Meike W. Vernooij, Marleen de Bruijne
Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network. MICCAI (4) (2019)
Florian Dubost, Pinar Yilmaz, Hieab H. Adams, Gerda Bortsova, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
Enlarged perivascular spaces in brain MRI: Automated quantification in four regions. NeuroImage 185 (2019)
Florian Dubost, Hieab H. Adams, Pinar Yilmaz, Gerda Bortsova, Gijs van Tulder, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
Weakly Supervised Object Detection with 2D and 3D Regression Neural Networks. CoRR (2019)
Neda Jahanshad, Joshua Faskowitz, Gennady V. Roshchupkin, Derrek P. Hibar, Boris A. Gutman, Nicholas J. Tustison, Hieab H. Adams, Wiro J. Niessen, Meike W. Vernooij, Mohammad Arfan Ikram, Marcel P. Zwiers, Alejandro Arias-Vasquez, Barbara Franke, Jennifer L. Kroll, Benson Mwangi, Jair C. Soares, Alex Ing, Sylvane Desrivières, Gunter Schumann, Narelle K. Hansell, Greig I. de Zubicaray, Katie L. McMahon, Nicholas G. Martin, Margaret J. Wright, Paul M. Thompson
Multi-Site Meta-Analysis of Morphometry. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (5) (2019)
Florian Dubost, Hieab H. Adams, Gerda Bortsova, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
3D regression neural network for the quantification of enlarged perivascular spaces in brain MRI. Medical Image Anal. 51 (2019)
Kimberlin M. H. van Wijnen, Florian Dubost, Pinar Yilmaz, Mohammad Arfan Ikram, Wiro J. Niessen, Hieab H. Adams, Meike W. Vernooij, Marleen de Bruijne
Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network. CoRR (2019)
Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
A Hybrid Deep Learning Framework for Integrated Segmentation and Registration: Evaluation on Longitudinal White Matter Tract Changes. MICCAI (3) (2019)
Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, Mohammad Arfan Ikram, Meike W. Vernooij, Esther Bron
A hybrid deep learning framework for integrated segmentation and registration: evaluation on longitudinal white matter tract changes. CoRR (2019)
Florian Dubost, Gerda Bortsova, Hieab H. Adams, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
Hydranet: Data Augmentation for Regression Neural Networks. MICCAI (4) (2019)
Hazel I. Zonneveld, Raimon H. R. Pruim, Daniel Bos, Henri A. Vrooman, Ryan L. Muetzel, Albert Hofman, Serge A. R. B. Rombouts, Aad van der Lugt, Wiro J. Niessen, Mohammad Arfan Ikram, Meike W. Vernooij
Patterns of functional connectivity in an aging population: The Rotterdam Study. NeuroImage 189 (2019)
Bo Li, Marius de Groot, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen, Esther Bron
Reproducible White Matter Tract Segmentation Using 3D U-Net on a Large-scale DTI Dataset. CoRR (2019)
Florian Dubost, Gerda Bortsova, Hieab H. Adams, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
Hydranet: Data Augmentation for Regression Neural Networks. CoRR (2018)
Tavia E. Evans, Hieab H. Adams, Silvan Licher, Frank J. Wolters, Aad van der Lugt, M. Kamran Ikram, Michael J. O'Sullivan, Meike W. Vernooij, Mohammad Arfan Ikram
Subregional volumes of the hippocampus in relation to cognitive function and risk of dementia. NeuroImage 178 (2018)
Florian Dubost, Hieab H. Adams, Gerda Bortsova, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
3D Regression Neural Network for the Quantification of Enlarged Perivascular Spaces in Brain MRI. CoRR (2018)
Wyke Huizinga, Dirk H. J. Poot, Meike W. Vernooij, Gennady Roshchupkin, Esther Bron, Mohammad Arfan Ikram, Daniel Rueckert, Wiro J. Niessen, Stefan Klein
A spatio-temporal reference model of the aging brain. NeuroImage 169 (2018)
Carolyn D. Langen, Lotte G. M. Cremers, Marius de Groot, Tonya White, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij
Disconnection due to white matter hyperintensities is associated with lower cognitive scores. NeuroImage 183 (2018)
Bo Li, Marius de Groot, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen, Esther E. Bron
Reproducible White Matter Tract Segmentation Using 3D U-Net on a Large-scale DTI Dataset. MLMI@MICCAI (2018)
Matthias W. Lorenz, Negin Ashtiani Abdi, Frank Scheckenbach, Anja Pflug, Alpaslan Bülbül, Alberico L. Catapano, Stefan Agewall, Marat Ezhov, Michiel L. Bots, Stefan Kiechl, Andreas Orth, Giuseppe D. Norata, Jean Philippe Empana, Hung-Ju Lin, Stela McLachlan, Lena Bokemark, Kimmo Ronkainen, Mauro Amato, Ulf Schminke, Sathanur R. Srinivasan, Lars Lind, Akihiko Kato, Chrystosomos Dimitriadis, Tadeusz Przewlocki, Shuhei Okazaki, C. D. A. Stehouwer, Tatjana Lazarevic, Peter Willeit, David N. Yanez, Helmuth Steinmetz, Dirk Sander, Holger Poppert, Moise Desvarieux, Mohammad Arfan Ikram, Sebastjan Bevc, Daniel Staub, Cesare R. Sirtori, Bernhard Iglseder, Gunnar Engström, Giovanni Tripepi, Oscar Beloqui, Moo-Sik Lee, Alfonsa Friera, Wuxiang Xie, Liliana Grigore, Matthieu Plichart, Ta-Chen Su, Christine Robertson, Caroline Schmidt, Tomi-Pekka Tuomainen, Fabrizio Veglia, Henry Völzke, Giel Nijpels, Aleksandar Jovanovic, Johann Willeit, Ralph L. Sacco, Oscar H. Franco, Radovan Hojs, Heiko Uthoff, Bo Hedblad, Hyun Woong Park, Carmen Z. Suarez, Dong Zhao, Pierre Ducimetiere, Kuo-Liong Chien, Jackie F. Price, Göran Bergström, Jussi Kauhanen, Elena Tremoli, Marcus Dörr, Gerald Berenson, Aikaterini Papagianni, Anna Kablak-Ziembicka, Kazuo Kitagawa, Jaqueline M. Dekker, Radojica Stolic, Joseph F. Polak, Matthias Sitzer, Horst Bickel, Tatjana Rundek, Albert Hofman, Robert Ekart, Beat Frauchiger, Samuela Castelnuovo, Maria Rosvall, Carmine Zoccali, Manuel F. Landecho, Jang-Ho Bae, Rafael Gabriel, Jing Liu, Damiano Baldassarre, Maryam Kavousi
Automatic identification of variables in epidemiological datasets using logic regression. BMC Medical Informatics Decis. Mak. 17 (1) (2017)
Veronika Cheplygina, Annegreet van Opbroek, Mohammad Arfan Ikram, Meike W. Vernooij, Marleen de Bruijne
Transfer Learning by Asymmetric Image Weighting for Segmentation across Scanners. CoRR (2017)
Florian Dubost, Gerda Bortsova, Hieab H. Adams, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
GP-Unet: Lesion Detection from Weak Labels with a 3D Regression Network. MICCAI (3) (2017)
Carolyn D. Langen, Gennady V. Roshchupkin, Hieab H. Adams, Marius de Groot, Frans Vos, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen
Heritability of connectivity and disconnectivity of the brain in a population-based study. ISBI (2017)
Florian Dubost, Gerda Bortsova, Hieab H. Adams, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
GP-Unet: Lesion Detection from Weak Labels with a 3D Regression Network. CoRR (2017)
Carolyn D. Langen, Meike W. Vernooij, Lotte G. M. Cremers, Wyke Huizinga, Marius de Groot, Mohammad Arfan Ikram, Tonya White, Wiro J. Niessen
The structural disconnectome: A pathology-sensitive extension of the structural connectome. ISBI (2017)
Wyke Huizinga, Dirk H. J. Poot, Gennady V. Roshchupkin, Esther E. Bron, Mohammad Arfan Ikram, Meike W. Vernooij, Daniel Rueckert, Wiro J. Niessen, Stefan Klein
Modeling the brain morphology distribution in the general aging population. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging (2016)
Veronika Cheplygina, Annegreet van Opbroek, Mohammad Arfan Ikram, Meike W. Vernooij, Marleen de Bruijne
Asymmetric similarity-weighted ensembles for image segmentation. ISBI (2016)
Annegreet van Opbroek, Mohammad Arfan Ikram, Meike W. Vernooij, Marleen de Bruijne
Transfer Learning Improves Supervised Image Segmentation Across Imaging Protocols. IEEE Trans. Medical Imaging 34 (5) (2015)
Annegreet van Opbroek, Meike W. Vernooij, Mohammad Arfan Ikram, Marleen de Bruijne
Weighting training images by maximizing distribution similarity for supervised segmentation across scanners. Medical Image Anal. 24 (1) (2015)
Annegreet van Opbroek, Mohammad Arfan Ikram, Meike W. Vernooij, Marleen de Bruijne
A Transfer-Learning Approach to Image Segmentation Across Scanners by Maximizing Distribution Similarity. MLMI (2013)
Marius de Groot, Meike W. Vernooij, Stefan Klein, Mohammad Arfan Ikram, Frans M. Vos, Stephen M. Smith, Wiro J. Niessen, Jesper L. R. Andersson
Improving alignment in Tract-based spatial statistics: Evaluation and optimization of image registration. NeuroImage 76 (2013)
Hakim C. Achterberg, Dirk H. J. Poot, Fedde van der Lijn, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen, Marleen de Bruijne
Local appearance features for robust MRI brain structure segmentation across scanning protocols. Medical Imaging: Image Processing (2013)
Fedde van der Lijn, Benjamin F. J. Verhaaren, Mohammad Arfan Ikram, Stefan Klein, Marleen de Bruijne, Henri A. Vrooman, Meike W. Vernooij, Alexander Hammers, Daniel Rueckert, Aad van der Lugt, Monique M. B. Breteler, Wiro J. Niessen
Automated measurement of local white matter lesion volume. NeuroImage 59 (4) (2012)
Babak Ghafaryasl, Fedde van der Lijn, Marielle Poels, Henri A. Vrooman, Mohammad Arfan Ikram, Wiro J. Niessen, Aad van der Lugt, Meike W. Vernooij, Marleen de Bruijne
A computer aided detection system for cerebral microbleeds in brain MRI. ISBI (2012)
Wiro J. Niessen, Henri A. Vrooman, Renske de Boer, Fedde van der Lijn, Hakim C. Achterberg, Marcel Koek, Stefan Klein, Aad van der Lugt, Marleen de Bruijne, Mohammad Arfan Ikram, Meike W. Vernooij
Quantitative imaging biomarkers in neurologic disease: Population study perspective. ISBI (2012)
Annegreet van Opbroek, Mohammad Arfan Ikram, Meike W. Vernooij, Marleen de Bruijne
Supervised Image Segmentation across Scanner Protocols: A Transfer Learning Approach. MLMI (2012)
Dirk H. J. Poot, Marleen de Bruijne, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen
Improved Tissue Segmentation by Including an MR Acquisition Model. MBIA (2011)
Renske de Boer, Michiel Schaap, Fedde van der Lijn, Henri A. Vrooman, Marius de Groot, Aad van der Lugt, Mohammad Arfan Ikram, Meike W. Vernooij, Monique M. B. Breteler, Wiro J. Niessen
Statistical analysis of minimum cost path based structural brain connectivity. NeuroImage 55 (2) (2011)
Renske de Boer, Henri A. Vrooman, Mohammad Arfan Ikram, Meike W. Vernooij, Monique M. B. Breteler, Aad van der Lugt, Wiro J. Niessen
Accuracy and reproducibility study of automatic MRI brain tissue segmentation methods. NeuroImage 51 (3) (2010)
Renske de Boer, Michiel Schaap, Fedde van der Lijn, Henri A. Vrooman, Marius de Groot, Meike W. Vernooij, Mohammad Arfan Ikram, Evert F. S. van Velsen, Aad van der Lugt, Monique M. B. Breteler
Statistical Analysis of Structural Brain Connectivity. MICCAI (2) (2010)
Renske de Boer, Henri A. Vrooman, Fedde van der Lijn, Meike W. Vernooij, Mohammad Arfan Ikram, Aad van der Lugt, Monique M. B. Breteler, Wiro J. Niessen
White matter lesion extension to automatic brain tissue segmentation on MRI. NeuroImage 45 (4) (2009)
Meike W. Vernooij, Marius de Groot, Aad van der Lugt, Mohammad Arfan Ikram, Gabriel P. Krestin, Albert Hofman, Wiro J. Niessen, Monique M. B. Breteler
White matter atrophy and lesion formation explain the loss of structural integrity of white matter in aging. NeuroImage 43 (3) (2008)
Fedde van der Lijn, Meike W. Vernooij, Mohammad Arfan Ikram, Henri A. Vrooman, Daniel Rueckert, Alexander Hammers, Monique M. B. Breteler, Wiro J. Niessen
Automated localization of periventricular and subcortical white matter lesions. Medical Imaging: Image Processing (2007)
Henri A. Vrooman, Chris A. Cocosco, Fedde van der Lijn, Rik Stokking, Mohammad Arfan Ikram, Meike W. Vernooij, Monique M. B. Breteler, Wiro J. Niessen
Multi-spectral brain tissue segmentation using automatically trained k-Nearest-Neighbor classification. NeuroImage 37 (1) (2007)
Renske de Boer, Fedde van der Lijn, Henri A. Vrooman, Meike W. Vernooij, Mohammad Arfan Ikram, Monique M. B. Breteler, Wiro J. Niessen
Automatic Segmentation of Brain Tissue Andwhitematter Lesions in MRI. ISBI (2007)
Henri A. Vrooman, Chris A. Cocosco, Rik Stokking, Mohammad Arfan Ikram, Meike W. Vernooij, Monique M. B. Breteler, Wiro J. Niessen
kNN-based multi-spectral MRI brain tissue classification: manual training versus automated atlas-based training. Medical Imaging: Image Processing (2006)