Wiro J. Niessen

ORCID

Publication Activity (10 Years)

Years Active: 1994-2024
Publications (10 Years): 118

Top Venues

Publications

Douwe J. Spaanderman, Martijn P. A. Starmans, Gonnie C. M. van Erp, David F. Hanff, Judith H. Sluijter, Anne-Rose W. Schut, Geert J. L. H. van Leenders, Cornelis Verhoef, Dirk J. Grünhagen, Wiro J. Niessen, Jacob J. Visser, Stefan Klein
Minimally Interactive Segmentation of Soft-Tissue Tumors on CT and MRI using Deep Learning. CoRR (2024)
Sijie Liu, Ruisheng Su, Jianghang Su, Jingmin Xin, Jiayi Wu, Wim H. van Zwam, Pieter Jan van Doormaal, Aad van der Lugt, Wiro J. Niessen, Nanning Zheng, Theo van Walsum
An automated framework for brain vessel centerline extraction from CTA images. CoRR (2024)
Ruisheng Su, Matthijs van der Sluijs, Yuan Chen, Sandra A. P. Cornelissen, Ruben van den Broek, Wim H. van Zwam, Aad van der Lugt, Wiro J. Niessen, Danny Ruijters, Theo van Walsum
CAVE: Cerebral artery-vein segmentation in digital subtraction angiography. Comput. Medical Imaging Graph. 115 (2024)
Mohamed Benmahdjoub, Abdullah Thabit, Wiro J. Niessen, Eppo B. Wolvius, Theo van Walsum
Fiducial markers detection trained exclusively on synthetic data for image-to-patient alignment in HMD-based surgical navigation. ISMAR-Adjunct (2023)
Bo Li, Jeroen de Bresser, Wiro J. Niessen, Matthias van Osch, Wiesje M. van der Flier, Geert Jan Biessels, Meike W. Vernooij, Esther Bron
Prior-knowledge-informed deep learning for lacune detection and quantification using multi-site brain MRI. CoRR (2023)
Mohamed Benmahdjoub, Abdullah Thabit, Marie-Lise C. van Veelen, Wiro J. Niessen, Eppo B. Wolvius, Theo van Walsum
Evaluation of AR visualization approaches for catheter insertion into the ventricle cavity. IEEE Trans. Vis. Comput. Graph. 29 (5) (2023)
Sijie Liu, Jingmin Xin, Jiayi Wu, Yangyang Deng, Ruisheng Su, Wiro J. Niessen, Nanning Zheng, Theo van Walsum
Multi-view Contour-constrained Transformer Network for Thin-cap Fibroatheroma Identification. Neurocomputing 523 (2023)
Ruisheng Su, Matthijs van der Sluijs, Sandra A. P. Cornelissen, Wim H. van Zwam, Aad van der Lugt, Wiro J. Niessen, Danny Ruijters, Theo van Walsum, Adrian V. Dalca
AngioMoCo: Learning-based Motion Correction in Cerebral Digital Subtraction Angiography. CoRR (2023)
Ruisheng Su, Matthijs van der Sluijs, Sandra A. P. Cornelissen, Wim H. van Zwam, Aad van der Lugt, Wiro J. Niessen, Danny Ruijters, Theo van Walsum, Adrian V. Dalca
AngioMoCo: Learning-Based Motion Correction in Cerebral Digital Subtraction Angiography. MICCAI (7) (2023)
Jiahang Su, Shuai Li, Lennard Wolff, Wim H. van Zwam, Wiro J. Niessen, Aad van der Lugt, Theo van Walsum
Deep reinforcement learning for cerebral anterior vessel tree extraction from 3D CTA images. Medical Image Anal. 84 (2023)
Martijn P. A. Starmans, Milea J. M. Timbergen, Melissa Vos, Michel Renckens, Dirk J. Grünhagen, Geert J. L. H. van Leenders, Roy S. Dwarkasing, François E. J. A. Willemssen, Wiro J. Niessen, Cornelis Verhoef, Stefan Sleijfer, Jacob J. Visser, Stefan Klein
Differential Diagnosis and Molecular Stratification of Gastrointestinal Stromal Tumors on CT Images Using a Radiomics Approach. J. Digit. Imaging 35 (2) (2022)
Mohamed Benmahdjoub, Wiro J. Niessen, Eppo B. Wolvius, Theo van Walsum
Multimodal markers for technology-independent integration of augmented reality devices and surgical navigation systems. Virtual Real. 26 (4) (2022)
Abdullah Thabit, Mohamed Benmahdjoub, Marie-Lise C. van Veelen, Wiro J. Niessen, Eppo B. Wolvius, Theo van Walsum
Augmented reality navigation for minimally invasive craniosynostosis surgery: a phantom study. Int. J. Comput. Assist. Radiol. Surg. 17 (8) (2022)
Vikram Venkatraghavan, Sebastian R. van der Voort, Daniel Bos, Marion Smits, Frederik Barkhof, Wiro J. Niessen, Stefan Klein, Esther E. Bron
Computer-aided diagnosis and prediction in brain disorders. CoRR (2022)
Wietske A. P. Bastiaansen, Melek Rousian, Régine P. M. Steegers-Theunissen, Wiro J. Niessen, Anton H. J. Koning, Stefan Klein
Towards a 4D Spatio-Temporal Atlas of the Embryonic and Fetal Brain Using a Deep Learning Approach for Groupwise Image Registration. WBIR (2022)
Ruisheng Su, Matthijs van der Sluijs, Sandra A. P. Cornelissen, Geert J. Lycklama, Jeannette Hofmeijer, Charles B. L. M. Majoie, Pieter Jan van Doormaal, Adriaan C. G. M. van Es, Danny Ruijters, Wiro J. Niessen, Aad van der Lugt, Theo van Walsum
Spatio-temporal deep learning for automatic detection of intracranial vessel perforation in digital subtraction angiography during endovascular thrombectomy. Medical Image Anal. 77 (2022)
Abdullah Thabit, Wiro J. Niessen, Eppo B. Wolvius, Theo van Walsum
Evaluation of marker tracking using mono and stereo vision in Microsoft HoloLens for surgical navigation. Medical Imaging: Image-Guided Procedures (2022)
Wietske A. P. Bastiaansen, Melek Rousian, Régine P. M. Steegers-Theunissen, Wiro J. Niessen, Anton H. J. Koning, S. Klein
Multi-Atlas Segmentation and Spatial Alignment of the Human Embryo in First Trimester 3D Ultrasound. CoRR (2022)
Martijn P. A. Starmans, Sebastian R. van der Voort, Thomas Phil, Milea J. M. Timbergen, Melissa Vos, Guillaume A. Padmos, Wouter Kessels, David Hanff, Dirk J. Grünhagen, Cornelis Verhoef, Stefan Sleijfer, Martin J. van den Bent, Marion Smits, Roy S. Dwarkasing, Christopher J. Els, Federico Fiduzi, Geert J. L. H. van Leenders, Anela Blazevic, Johannes Hofland, Tessa Brabander, Renza A. H. van Gils, Gaston J. H. Franssen, Richard A. Feelders, Wouter W. de Herder, Florian E. Buisman, François E. J. A. Willemssen, Bas Groot Koerkamp, Lindsay Angus, Astrid A. M. van der Veldt, Ana Rajicic, Arlette E. Odink, Mitchell Deen, Jose M. Castillo T, Jifke F. Veenland, Ivo Schoots, Michel Renckens, Michail Doukas, Rob A. de Man, Jan N. M. IJzermans, Razvan L. Miclea, Peter B. Vermeulen, Esther E. Bron, Maarten G. Thomeer, Jacob J. Visser, Wiro J. Niessen, Stefan Klein
Reproducible radiomics through automated machine learning validated on twelve clinical applications. CoRR (2021)
Ruisheng Su, Sandra A. P. Cornelissen, Matthijs van der Sluijs, Adriaan C. G. M. van Es, Wim H. van Zwam, Diederik W. J. Dippel, Geert J. Lycklama, Pieter Jan van Doormaal, Wiro J. Niessen, Aad van der Lugt, Theo van Walsum
autoTICI: Automatic Brain Tissue Reperfusion Scoring on 2D DSA Images of Acute Ischemic Stroke Patients. IEEE Trans. Medical Imaging 40 (9) (2021)
Vikram Venkatraghavan, Stefan Klein, Lana Fani, Leontine S. Ham, Henri A. Vrooman, M. Kamran Ikram, Wiro J. Niessen, Esther E. Bron
on Alzheimer's disease progression using an event-based model for stratified populations. NeuroImage 227 (2021)
Vikram Venkatraghavan, Elisabeth J. Vinke, Esther E. Bron, Wiro J. Niessen, Mohammad Arfan Ikram, Stefan Klein, Meike W. Vernooij
Progression along data-driven disease timelines is predictive of Alzheimer's disease in a population-based cohort. NeuroImage 238 (2021)
Xianjing Liu, Bo Li, Esther Bron, Wiro J. Niessen, Eppo B. Wolvius, Gennady Roshchupkin
Projection-wise Disentangling for Fair and Interpretable Representation Learning: Application to 3D Facial Shape Analysis. CoRR (2021)
Bo Li, Wiro J. Niessen, Stefan Klein, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
Learning unbiased group-wise registration (LUGR) and joint segmentation: evaluation on longitudinal diffusion MRI. Medical Imaging: Image Processing (2021)
Emanoel R. Sabidussi, Stefan Klein, Matthan W. A. Caan, Shabab Bazrafkan, Arnold Jan den Dekker, Jan Sijbers, Wiro J. Niessen, Dirk H. J. Poot
Recurrent inference machines as inverse problem solvers for MR relaxometry. Medical Image Anal. 74 (2021)
Wyke Huizinga, Dirk H. J. Poot, Elisabeth J. Vinke, F. Wenzel, Esther Bron, N. Toussaint, C. Ledig, Henri A. Vrooman, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Stefan Klein
Differences Between MR Brain Region Segmentation Methods: Impact on Single-Subject Analysis. Frontiers Big Data 4 (2021)
Emanoel R. Sabidussi, Stefan Klein, Matthan W. A. Caan, Shabab Bazrafkan, Arjan Jan den Dekker, Jan Sijbers, Wiro J. Niessen, Dirk H. J. Poot
Recurrent Inference Machines as inverse problem solvers for MR relaxometry. CoRR (2021)
Xianjing Liu, Bo Li, Esther E. Bron, Wiro J. Niessen, Eppo B. Wolvius, Gennady V. Roshchupkin
Projection-Wise Disentangling for Fair and Interpretable Representation Learning: Application to 3D Facial Shape Analysis. MICCAI (5) (2021)
Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
Longitudinal diffusion MRI analysis using Segis-Net: A single-step deep-learning framework for simultaneous segmentation and registration. NeuroImage 235 (2021)
Mohamed Benmahdjoub, Wiro J. Niessen, Eppo B. Wolvius, Theo van Walsum
Virtual extensions improve perception-based instrument alignment using optical see-through devices. IEEE Trans. Vis. Comput. Graph. 27 (11) (2021)
Vikram Venkatraghavan, Stefan Klein, Lana Fani, Leontine S. Ham, Henri A. Vrooman, M. Kamran Ikram, Wiro J. Niessen, Esther E. Bron
Analyzing the effect of APOE on Alzheimer's disease progression using an event-based model for stratified populations. CoRR (2020)
Yuanyuan Sun, Taygun Kekec, Adriaan Moelker, Wiro J. Niessen, Theo van Walsum
Transformation optimization and image blending for 3D liver ultrasound series stitching. Medical Imaging: Image-Guided Procedures (2020)
Muhammad Arif, Ivo G. Schoots, Jose M. Castillo T, Monique J. Roobol, Wiro J. Niessen, Jifke F. Veenland
Computer Aided Diagnosis of Clinically Significant Prostate Cancer in Low-Risk Patients on Multi-Parametric MR Images Using Deep Learning. ISBI (2020)
Esther E. Bron, Stefan Klein, Janne M. Papma, Lize C. Jiskoot, Vikram Venkatraghavan, Jara Linders, Pauline Aalten, Peter Paul De Deyn, Geert Jan Biessels, Jurgen A. H. R. Claassen, Huub A. M. Middelkoop, Marion Smits, Wiro J. Niessen, John van Swieten, Wiesje M. van der Flier, Inez H. G. B. Ramakers, Aad van der Lugt
Cross-Cohort Generalizability of Deep and Conventional Machine Learning for MRI-based Diagnosis and Prediction of Alzheimer's Disease. CoRR (2020)
Jiahang Su, Lennard Wolff, Adriaan C. G. M. van Es, Wim H. van Zwam, Charles B. L. M. Majoie, Diederik W. J. Dippel, Aad van der Lugt, Wiro J. Niessen, Theo van Walsum
Automatic Collateral Scoring From 3D CTA Images. IEEE Trans. Medical Imaging 39 (6) (2020)
Hayit Greenspan, Raúl San José Estépar, Wiro J. Niessen, Eliot L. Siegel, Mads Nielsen
Position paper on COVID-19 imaging and AI: From the clinical needs and technological challenges to initial AI solutions at the lab and national level towards a new era for AI in healthcare. Medical Image Anal. 66 (2020)
Georgius A. M. Arkesteijn, Dirk H. J. Poot, Mohammad Arfan Ikram, Wiro J. Niessen, Lucas J. van Vliet, Meike W. Vernooij, Frans M. Vos
Orientation Prior and Consistent Model Selection Increase Sensitivity of Tract-Based Spatial Statistics in Crossing-Fiber Regions. IEEE Trans. Medical Imaging 39 (2) (2020)
Hakim C. Achterberg, Johan J. de Rooi, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen, Paul H. C. Eilers, Marleen de Bruijne
Spatially Regularized Shape Analysis of the Hippocampus Using P-Spline Based Shape Regression. IEEE J. Biomed. Health Informatics 24 (3) (2020)
Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
Longitudinal diffusion MRI analysis using Segis-Net: a single-step deep-learning framework for simultaneous segmentation and registration. CoRR (2020)
Wietske A. P. Bastiaansen, Melek Rousian, Régine P. M. Steegers-Theunissen, Wiro J. Niessen, Anton H. J. Koning, Stefan Klein
Atlas-Based Segmentation of the Human Embryo Using Deep Learning with Minimal Supervision. ASMUS/PIPPI@MICCAI (2020)
Bo Li, Wiro J. Niessen, Stefan Klein, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
Learning unbiased registration and joint segmentation: evaluation on longitudinal diffusion MRI. CoRR (2020)
Oliver Werner, Kimberlin M. H. van Wijnen, Wiro J. Niessen, Marius de Groot, Meike W. Vernooij, Florian Dubost, Marleen de Bruijne
When Weak Becomes Strong: Robust Quantification of White Matter Hyperintensities in Brain MRI scans. CoRR (2020)
Wietske A. P. Bastiaansen, Melek Rousian, Régine P. M. Steegers-Theunissen, Wiro J. Niessen, Anton H. J. Koning, Stefan Klein
Towards Segmentation and Spatial Alignment of the Human Embryonic Brain Using Deep Learning for Atlas-Based Registration. WBIR (2020)
Bo Li, Marius de Groot, Rebecca M. E. Steketee, Rozanna Meijboom, Marion Smits, Meike W. Vernooij, Mohammad Arfan Ikram, Jiren Liu, Wiro J. Niessen, Esther E. Bron
Neuro4Neuro: A neural network approach for neural tract segmentation using large-scale population-based diffusion imaging. NeuroImage 218 (2020)
Wietske A. P. Bastiaansen, Melek Rousian, Régine P. M. Steegers-Theunissen, Wiro J. Niessen, Anton H. J. Koning, Stefan Klein
Towards segmentation and spatial alignment of the human embryonic brain using deep learning for atlas-based registration. CoRR (2020)
Florian Dubost, Marleen de Bruijne, Marco Nardin, Adrian V. Dalca, Kathleen L. Donahue, Anne-Katrin Giese, Mark R. Etherton, Ona Wu, Marius de Groot, Wiro J. Niessen, Meike W. Vernooij, Natalia S. Rost, Markus D. Schirmer
Multi-atlas image registration of clinical data with automated quality assessment using ventricle segmentation. Medical Image Anal. 63 (2020)
Sebastian R. van der Voort, Fatih Incekara, Maarten M. J. Wijnenga, Georgios Kapsas, Renske Gahrmann, Joost W. Schouten, Rishi Nandoe Tewarie, Geert J. Lycklama, Philip C. De Witt Hamer, Roelant S. Eijgelaar, Pim J. French, Hendrikus J. Dubbink, Arnaud J. P. E. Vincent, Wiro J. Niessen, Martin J. van den Bent, Marion Smits, Stefan Klein
WHO 2016 subtyping and automated segmentation of glioma using multi-task deep learning. CoRR (2020)
Yaron Caspi, Rachel M. Brouwer, Hugo G. Schnack, Marieke E. van de Nieuwenhuijzen, Wiepke Cahn, René S. Kahn, Wiro J. Niessen, Aad van der Lugt, Hilleke E. Hulshoff Pol
Changes in the intracranial volume from early adulthood to the sixth decade of life: A longitudinal study. NeuroImage 220 (2020)
Ruisheng Su, Sandra A. P. Cornelissen, Matthijs van der Sluijs, Adriaan C. G. M. van Es, Wim H. van Zwam, Diederik W. J. Dippel, Geert J. Lycklama, Pieter Jan van Doormaal, Wiro J. Niessen, Aad van der Lugt, Theo van Walsum
autoTICI: Automatic Brain Tissue Reperfusion Scoring on 2D DSA Images of Acute Ischemic Stroke Patients. CoRR (2020)
Florian Dubost, Hieab Adams, Pinar Yilmaz, Gerda Bortsova, Gijs van Tulder, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
Weakly supervised object detection with 2D and 3D regression neural networks. Medical Image Anal. 65 (2020)
Bo Li, Marius de Groot, Rebecca M. E. Steketee, Rozanna Meijboom, Marion Smits, Meike W. Vernooij, Mohammad Arfan Ikram, Jiren Liu, Wiro J. Niessen, Esther E. Bron
Neuro4Neuro: A neural network approach for neural tract segmentation using large-scale population-based diffusion imaging. CoRR (2020)
Martijn P. A. Starmans, Milea J. M. Timbergen, Melissa Vos, Michel Renckens, Dirk J. Grünhagen, Geert J. L. H. van Leenders, Roy S. Dwarkasing, François E. J. A. Willemssen, Wiro J. Niessen, Cornelis Verhoef, Stefan Sleijfer, Jacob J. Visser, Stefan Klein
Differential diagnosis and molecular stratification of gastrointestinal stromal tumors on CT images using a radiomics approach. CoRR (2020)
Natalia Vilor-Tejedor, Mohammad Arfan Ikram, Gennady V. Roshchupkin, Alejandro Cáceres, Silvia Alemany, Meike W. Vernooij, Wiro J. Niessen, Cornelia M. van Duijn, Jordi Sunyer, Hieab H. Adams, Juan R. González
Independent Multiple Factor Association Analysis for Multiblock Data in Imaging Genetics. Neuroinformatics 17 (4) (2019)
Kimberlin M. H. van Wijnen, Florian Dubost, Pinar Yilmaz, Mohammad Arfan Ikram, Wiro J. Niessen, Hieab H. Adams, Meike W. Vernooij, Marleen de Bruijne
Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network. MICCAI (4) (2019)
Florian Dubost, Pinar Yilmaz, Hieab H. Adams, Gerda Bortsova, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
Enlarged perivascular spaces in brain MRI: Automated quantification in four regions. NeuroImage 185 (2019)
Jyotirmoy Banerjee, Yuanyuan Sun, Camiel Klink, Renske Gahrmann, Wiro J. Niessen, Adriaan Moelker, Theo van Walsum
Multiple-correlation similarity for block-matching based fast CT to ultrasound registration in liver interventions. Medical Image Anal. 53 (2019)
Florian Dubost, Max Dünnwald, Denver Huff, Vincent Scheumann, Frank Schreiber, Meike W. Vernooij, Wiro J. Niessen, Martin Skalej, Stefanie Schreiber, Steffen Oeltze-Jafra, Marleen de Bruijne
Automated Quantification of Enlarged Perivascular Spaces in Clinical Brain MRI Across Sites. OR/MLCN@MICCAI (2019)
Florian Dubost, Benjamin Collery, Antonin Renaudier, Axel Roc, Nicolas Posocco, Wiro J. Niessen, Marleen de Bruijne
Automated Estimation of the Spinal Curvature via Spine Centerline Extraction with Ensembles of Cascaded Neural Networks. CSI@MICCAI (2019)
Florian Dubost, Hieab H. Adams, Pinar Yilmaz, Gerda Bortsova, Gijs van Tulder, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
Weakly Supervised Object Detection with 2D and 3D Regression Neural Networks. CoRR (2019)
Jose M. Castillo T, Martijn P. A. Starmans, Wiro J. Niessen, Ivo Schoots, Stefan Klein, Jifke F. Veenland
Classification Of Prostate Cancer: High Grade Versus Low Grade Using A Radiomics Approach. ISBI (2019)
Neda Jahanshad, Joshua Faskowitz, Gennady V. Roshchupkin, Derrek P. Hibar, Boris A. Gutman, Nicholas J. Tustison, Hieab H. Adams, Wiro J. Niessen, Meike W. Vernooij, Mohammad Arfan Ikram, Marcel P. Zwiers, Alejandro Arias-Vasquez, Barbara Franke, Jennifer L. Kroll, Benson Mwangi, Jair C. Soares, Alex Ing, Sylvane Desrivières, Gunter Schumann, Narelle K. Hansell, Greig I. de Zubicaray, Katie L. McMahon, Nicholas G. Martin, Margaret J. Wright, Paul M. Thompson
Multi-Site Meta-Analysis of Morphometry. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (5) (2019)
Vikram Venkatraghavan, Florian Dubost, Esther E. Bron, Wiro J. Niessen, Marleen de Bruijne, Stefan Klein
Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia. IPMI (2019)
Florian Dubost, Hieab H. Adams, Gerda Bortsova, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
3D regression neural network for the quantification of enlarged perivascular spaces in brain MRI. Medical Image Anal. 51 (2019)
Kimberlin M. H. van Wijnen, Florian Dubost, Pinar Yilmaz, Mohammad Arfan Ikram, Wiro J. Niessen, Hieab H. Adams, Meike W. Vernooij, Marleen de Bruijne
Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network. CoRR (2019)
Vikram Venkatraghavan, Florian Dubost, Esther E. Bron, Wiro J. Niessen, Marleen de Bruijne, Stefan Klein
Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia. CoRR (2019)
Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
A Hybrid Deep Learning Framework for Integrated Segmentation and Registration: Evaluation on Longitudinal White Matter Tract Changes. MICCAI (3) (2019)
Jean-Marie Guyader, Wyke Huizinga, Valerio Fortunati, Dirk H. J. Poot, Jifke F. Veenland, Margarethus M. Paulides, Wiro J. Niessen, Stefan Klein
Groupwise Multichannel Image Registration. IEEE J. Biomed. Health Informatics 23 (3) (2019)
Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, Mohammad Arfan Ikram, Meike W. Vernooij, Esther Bron
A hybrid deep learning framework for integrated segmentation and registration: evaluation on longitudinal white matter tract changes. CoRR (2019)
Florian Dubost, Marleen de Bruijne, Marco Nardin, Adrian V. Dalca, Kathleen L. Donahue, Anne-Katrin Giese, Mark R. Etherton, Ona Wu, Marius de Groot, Wiro J. Niessen, Meike W. Vernooij, Natalia S. Rost, Markus D. Schirmer
Automated Image Registration Quality Assessment Utilizing Deep-learning based Ventricle Extraction in Clinical Data. CoRR (2019)
Gerard Snaauw, Dong Gong, Gabriel Maicas, Anton van den Hengel, Wiro J. Niessen, Johan Verjans, Gustavo Carneiro
End-To-End Diagnosis And Segmentation Learning From Cardiac Magnetic Resonance Imaging. ISBI (2019)
Florian Dubost, Gerda Bortsova, Hieab H. Adams, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
Hydranet: Data Augmentation for Regression Neural Networks. MICCAI (4) (2019)
Hazel I. Zonneveld, Raimon H. R. Pruim, Daniel Bos, Henri A. Vrooman, Ryan L. Muetzel, Albert Hofman, Serge A. R. B. Rombouts, Aad van der Lugt, Wiro J. Niessen, Mohammad Arfan Ikram, Meike W. Vernooij
Patterns of functional connectivity in an aging population: The Rotterdam Study. NeuroImage 189 (2019)
Bo Li, Marius de Groot, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen, Esther Bron
Reproducible White Matter Tract Segmentation Using 3D U-Net on a Large-scale DTI Dataset. CoRR (2019)
Florian Dubost, Benjamin Collery, Antonin Renaudier, Axel Roc, Nicolas Posocco, Gerda Bortsova, Wiro J. Niessen, Marleen de Bruijne
Automated Estimation of the Spinal Curvature via Spine Centerline Extraction with Ensembles of Cascaded Neural Networks. CoRR (2019)
Vikram Venkatraghavan, Esther E. Bron, Wiro J. Niessen, Stefan Klein
Disease progression timeline estimation for Alzheimer's disease using discriminative event based modeling. NeuroImage 186 (2019)
Martijn P. A. Starmans, Razvan L. Miclea, Sebastian R. van der Voort, Wiro J. Niessen, Maarten G. Thomeer, Stefan Klein
Classification of malignant and benign liver tumors using a radiomics approach. Medical Imaging: Image Processing (2018)
Florian Dubost, Gerda Bortsova, Hieab H. Adams, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
Hydranet: Data Augmentation for Regression Neural Networks. CoRR (2018)
Gerard Snaauw, Dong Gong, Gabriel Maicas, Anton van den Hengel, Wiro J. Niessen, Johan Verjans, Gustavo Carneiro
End-to-End Diagnosis and Segmentation Learning from Cardiac Magnetic Resonance Imaging. CoRR (2018)
Florian Dubost, Hieab H. Adams, Gerda Bortsova, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
3D Regression Neural Network for the Quantification of Enlarged Perivascular Spaces in Brain MRI. CoRR (2018)
Mathias Polfliet, Stefan Klein, Wyke Huizinga, Margarethus M. Paulides, Wiro J. Niessen, Jef Vandemeulebroucke
Intrasubject multimodal groupwise registration with the conditional template entropy. Medical Image Anal. 46 (2018)
Wei Sun, Dirk H. J. Poot, Xuan Yang, Wiro J. Niessen, Stefan Klein
Averaged Stochastic Optimization for Medical Image Registration Based on Variance Reduction. WBIR (2018)
Yuanyuan Sun, Adriaan Moelker, Wiro J. Niessen, Theo van Walsum
Towards Robust CT-Ultrasound Registration Using Deep Learning Methods. MLCN/DLF/iMIMIC@MICCAI (2018)
Wyke Huizinga, Dirk H. J. Poot, Meike W. Vernooij, Gennady Roshchupkin, Esther Bron, Mohammad Arfan Ikram, Daniel Rueckert, Wiro J. Niessen, Stefan Klein
A spatio-temporal reference model of the aging brain. NeuroImage 169 (2018)
Carolyn D. Langen, Lotte G. M. Cremers, Marius de Groot, Tonya White, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij
Disconnection due to white matter hyperintensities is associated with lower cognitive scores. NeuroImage 183 (2018)
Vikram Venkatraghavan, Esther E. Bron, Wiro J. Niessen, Stefan Klein, Alzheimer's Disease Neuroimaging Initiative
Disease Progression Timeline Estimation for Alzheimer's Disease using Discriminative Event Based Modeling. CoRR (2018)
Lena Maier-Hein, Matthias Eisenmann, Annika Reinke, Sinan Onogur, Marko Stankovic, Patrick Scholz, Tal Arbel, Hrvoje Bogunovic, Andrew P. Bradley, Aaron Carass, Carolin Feldmann, Alejandro F. Frangi, Peter M. Full, Bram van Ginneken, Allan Hanbury, Katrin Honauer, Michal Kozubek, Bennett A. Landman, Keno März, Oskar Maier, Klaus H. Maier-Hein, Bjoern H. Menze, Henning Müller, Peter F. Neher, Wiro J. Niessen, Nasir M. Rajpoot, Gregory C. Sharp, Korsuk Sirinukunwattana, Stefanie Speidel, Christian Stock, Danail Stoyanov, Abdel Aziz Taha, Fons van der Sommen, Ching-Wei Wang, Marc-André Weber, Guoyan Zheng, Pierre Jannin, Annette Kopp-Schneider
Is the winner really the best? A critical analysis of common research practice in biomedical image analysis competitions. CoRR (2018)
Bo Li, Marius de Groot, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen, Esther E. Bron
Reproducible White Matter Tract Segmentation Using 3D U-Net on a Large-scale DTI Dataset. MLMI@MICCAI (2018)
Sebastian R. van der Voort, Renske Gahrmann, Martin J. van den Bent, Arnaud J. P. E. Vincent, Wiro J. Niessen, Marion Smits, Stefan Klein
Radiogenomic classification of the 1p/19q status in presumed low-grade gliomas. ISBI (2017)
Wei Sun, Wiro J. Niessen, Stefan Klein
Randomly Perturbed B-Splines for Nonrigid Image Registration. IEEE Trans. Pattern Anal. Mach. Intell. 39 (7) (2017)
Florian Dubost, Gerda Bortsova, Hieab H. Adams, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
GP-Unet: Lesion Detection from Weak Labels with a 3D Regression Network. MICCAI (3) (2017)
Pierre Ambrosini, Daniel Ruijters, Wiro J. Niessen, Adriaan Moelker, Theo van Walsum
Fully Automatic and Real-Time Catheter Segmentation in X-Ray Fluoroscopy. MICCAI (2) (2017)
Mathias Polfliet, Stefan Klein, Wiro J. Niessen, Jef Vandemeulebroucke
Laplacian eigenmaps for multimodal groupwise image registration. Medical Imaging: Image Processing (2017)
Anjana Ramkumar, Pieter Jan Stappers, Wiro J. Niessen, Sonja Adebahr, Tanja Schimek-Jasch, Ursula Nestle, Yu Song
Using GOMS and NASA-TLX to Evaluate Human-Computer Interaction Process in Interactive Segmentation. Int. J. Hum. Comput. Interact. 33 (2) (2017)
Carolyn D. Langen, Gennady V. Roshchupkin, Hieab H. Adams, Marius de Groot, Frans Vos, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen
Heritability of connectivity and disconnectivity of the brain in a population-based study. ISBI (2017)
Michel Dojat, David N. Kennedy, Wiro J. Niessen
Editorial: MAPPING: MAnagement and Processing of Images for Population ImagiNG. Frontiers ICT 4 (2017)
Manon L. Tolhuisen, J. Enthoven, E. M. M. Santos, Wiro J. Niessen, L. F. M. Beenen, Diederik W. J. Dippel, Aad van der Lugt, Wim H. van Zwam, Yvo B. W. E. M. Roos, Robert J. van Oostenbrugge, Charles B. L. M. Majoie, Henk A. Marquering
The Effect of Non-contrast CT Slice Thickness on Thrombus Density and Perviousness Assessment. CMMI/RAMBO/SWITCH@MICCAI (2017)
Florian Dubost, Gerda Bortsova, Hieab H. Adams, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
GP-Unet: Lesion Detection from Weak Labels with a 3D Regression Network. CoRR (2017)
Pierre Ambrosini, Ihor Smal, Daniel Ruijters, Wiro J. Niessen, Adriaan Moelker, Theo van Walsum
A Hidden Markov Model for 3D Catheter Tip Tracking With 2D X-ray Catheterization Sequence and 3D Rotational Angiography. IEEE Trans. Medical Imaging 36 (3) (2017)
Carolyn D. Langen, Meike W. Vernooij, Lotte G. M. Cremers, Wyke Huizinga, Marius de Groot, Mohammad Arfan Ikram, Tonya White, Wiro J. Niessen
The structural disconnectome: A pathology-sensitive extension of the structural connectome. ISBI (2017)
Georgius A. M. Arkesteijn, Dirk H. J. Poot, M. Niestijl, Meike W. Vernooij, Wiro J. Niessen, Lucas J. van Vliet, Frans M. Vos
Longitudinal analysis of diffusion-weighted MRI with a ball-and-sticks model. ISBI (2017)

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Wiro J. Niessen