Ihor Smal

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 24

Top Topics

Microscope Images

Gaussian Process

Data Association

Top Venues

Medical Image Anal.

Neuroinformatics

IEEE J. Sel. Top. Signal Process.

Publications

Anne-Wietje Zwijnen, Leon Watzema, Yanto Ridwan, Ingrid van Der Pluijm, Ihor Smal, Jeroen Essers
Self-adaptive deep learning-based segmentation for universal and functional clinical and preclinical CT image analysis. Comput. Biol. Medicine 179 (2024)
Vincent J. W. Hellebrekers, Theo van Walsum, Ihor Smal, Sandra A. P. Cornelissen, Wim H. van Zwam, Aad van der Lugt, Matthijs van der Sluijs, Ruisheng Su
Automated image registration of cerebral digital subtraction angiography. Int. J. Comput. Assist. Radiol. Surg. 19 (1) (2024)
Tijmen H. de Wolf, Matthijs Snelders, Jeroen Essers, Ihor Smal
CA-LIME: An Algorithm that Explains Classification Results of Cardiomyocyte Beating. ISBI (2023)
Hélène Kabbech, Jente van Staalduinen, Frank Grosveld, Ihor Smal
Accurate Estimation of Particle Dynamics Bypassing Substrate Drift Bias: Application to Cell Nucleus Motion. ISBI (2023)
Hélène Kabbech, Ihor Smal
Identification of Diffusive States in Tracking Applications Using Unsupervised Deep Learning Methods. ISBI (2022)
Wei Zhao, Eleni Maria Manolika, Arnab Ray Chaudhuri, Ihor Smal
Detection Of Replication Forks In Em Images Using Faster R-Cnn. ISBI (2021)
Hua Ma, Ihor Smal, Joost Daemen, Theo van Walsum
Dynamic coronary roadmapping via catheter tip tracking in X-ray fluoroscopy with deep learning based Bayesian filtering. Medical Image Anal. 61 (2020)
Yao Yao, Ihor Smal, Ilya Grigoriev, Anna Akhmanova, Erik Meijering
Deep-learning method for data association in particle tracking. Bioinform. 36 (19) (2020)
Hua Ma, Ihor Smal, Joost Daemen, Theo van Walsum
Dynamic Coronary Roadmapping via Catheter Tip Tracking in X-ray Fluoroscopy with Deep Learning Based Bayesian Filtering. CoRR (2020)
Herman Bergwerf, Malik Bechakra, Ihor Smal, Joost L. M. Jongen, Erik Meijering
Nerve Fiber Segmentation in Bright-Field Microscopy Images of Skin Biopsies Using Deep Learning. ISBI (2019)
Ihor Smal, Yao Yao, Niels Galjart, Erik Meijering
Facilitating Data Association In Particle Tracking Using Autoencoding And Score Matching. ISBI (2019)
Gadea Mata, Miroslav Radojevic, Carlos Fernandez-Lozano, Ihor Smal, Niels Werij, Miguel Morales, Erik Meijering, Julio Rubio
Automated Neuron Detection in High-Content Fluorescence Microscopy Images Using Machine Learning. Neuroinformatics 17 (2) (2019)
Yao Yao, Ihor Smal, Erik Meijering
Deep neural networks for data association in particle tracking. ISBI (2018)
Ihor Smal, Niels Galjart, Erik Meijering
Accurate estimation of intracellular dynamics and underlying spatial structures using hierarchical trajectory smoothing. ISBI (2018)
Pierre Ambrosini, Ihor Smal, Daniel Ruijters, Wiro J. Niessen, Adriaan Moelker, Theo van Walsum
A Hidden Markov Model for 3D Catheter Tip Tracking With 2D X-ray Catheterization Sequence and 3D Rotational Angiography. IEEE Trans. Medical Imaging 36 (3) (2017)
Ihor Smal, Sreya Basu, Laura Sayas, Niels Galjart, Erik Meijering
Gaussian processes for trajectory analysis in microtubule tracking applications. ISBI (2017)
Wei Sun, Dirk H. J. Poot, Ihor Smal, Xuan Yang, Wiro J. Niessen, Stefan Klein
Stochastic optimization with randomized smoothing for image registration. Medical Image Anal. 35 (2017)
Isabel Schlangen, Jose Franco, Jeremie Houssineau, William T. E. Pitkeathly, Daniel Edward Clark, Ihor Smal, Colin Rickman
Marker-Less Stage Drift Correction in Super-Resolution Microscopy Using the Single-Cluster PHD Filter. IEEE J. Sel. Top. Signal Process. 10 (1) (2016)
Ihor Smal, Erik Meijering
Poisson Point Processes for Solving Stochastic Inverse Problems in Fluorescence Microscopy. ECCV Workshops (1) (2016)
Miroslav Radojevic, Ihor Smal, Erik Meijering
Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons. Neuroinformatics 14 (2) (2016)
Gadea Mata, Miroslav Radojevic, Ihor Smal, Miguel Morales, Erik Meijering, Julio Rubio
Automatic detection of neurons in high-content microscope images using machine learning approaches. ISBI (2016)
Miroslav Radojevic, Ihor Smal, Erik Meijering
Automated neuron morphology reconstruction using fuzzy-logic detection and Bayesian tracing algorithms. ISBI (2015)
Pierre Ambrosini, Ihor Smal, Daniel Ruijters, Wiro J. Niessen, Adriaan Moelker, Theo van Walsum
3D Catheter Tip Tracking in 2D X-Ray Image Sequences Using a Hidden Markov Model and 3D Rotational Angiography. AE-CAI (2015)
Ihor Smal, Erik Meijering
Quantitative comparison of multiframe data association techniques for particle tracking in time-lapse fluorescence microscopy. Medical Image Anal. 24 (1) (2015)
Miroslav Radojevic, Ihor Smal, Wiro J. Niessen, Erik Meijering
Fuzzy logic based detection of neuron bifurcations in microscopy images. ISBI (2014)
Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini
An adaptive distributed resampling algorithm with non-proportional allocation. ICASSP (2014)
Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini
PPF - A Parallel Particle Filtering Library. CoRR (2013)
Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini
Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering. CoRR (2013)
Ihor Smal, Noemí Carranza-Herrezuelo, Stefan Klein, Piotr Wielopolski, Adriaan Moelker, Tirza Springeling, Monique Bernsen, Wiro J. Niessen, Erik Meijering
Reversible jump MCMC methods for fully automatic motion analysis in tagged MRI. Medical Image Anal. 16 (1) (2012)
Ihor Smal, Noemí Carranza-Herrezuelo, Stefan Klein, Wiro J. Niessen, Erik Meijering
Quantitative comparison of tracking methods for motion analysis in tagged MRI. ISBI (2011)
Ihor Smal, Noemí Carranza-Herrezuelo, Stefan Klein, Wiro J. Niessen, Erik Meijering
Trans-Dimensional MCMC Methods for Fully Automatic Motion Analysis in Tagged MRI. MICCAI (1) (2011)
Noemí Carranza-Herrezuelo, Ihor Smal, Oleh Dzyubachyk, Wiro J. Niessen, Erik Meijering
Automated lineage tree reconstruction from Caenorhabditis elegans image data using particle filtering based cell tracking. ISBI (2011)
Ihor Smal, Ilya Grigoriev, Anna Akhmanova, Wiro J. Niessen, Erik Meijering
Microtubule Dynamics Analysis Using Kymographs and Variable-Rate Particle Filters. IEEE Trans. Image Process. 19 (7) (2010)
Ihor Smal, Wiro J. Niessen, Erik Meijering
Particle filtering methods for motion analysis in tagged MRI. ISBI (2010)
Ihor Smal, Marco Loog, Wiro J. Niessen, Erik Meijering
Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy. IEEE Trans. Medical Imaging 29 (2) (2010)
Ihor Smal, Marco Loog, Wiro J. Niessen, Erik Meijering
Quantitative Comparison of Spot Detection Methods in Live-Cell Fluorescence Microscopy Imaging. ISBI (2009)
Ihor Smal, Erik Meijering, Katharina Draegestein, Niels Galjart, Ilya Grigoriev, Anna Akhmanova, M. E. van Royen, Adriaan B. Houtsmuller, Wiro J. Niessen
Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering. Medical Image Anal. 12 (6) (2008)
Ihor Smal, Wiro J. Niessen, Erik Meijering
A new detection scheme for multiple object tracking in fluorescence microscopy by joint probabilistic data association filtering. ISBI (2008)
Ihor Smal, Katharina Draegestein, Niels Galjart, Wiro J. Niessen, Erik Meijering
Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images: Application to Microtubule Growth Analysis. IEEE Trans. Medical Imaging 27 (6) (2008)
Ihor Smal, Wiro J. Niessen, Erik Meijering
Advanced Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images. ISBI (2007)
Ihor Smal, Katharina Draegestein, Niels Galjart, Wiro J. Niessen, Erik Meijering
Rao-Blackwellized Marginal Particle Filtering for Multiple Object Tracking in Molecular Bioimaging. IPMI (2007)
Michiel Schaap, Rashindra Manniesing, Ihor Smal, Theo van Walsum, Aad van der Lugt, Wiro J. Niessen
Bayesian Tracking of Tubular Structures and Its Application to Carotid Arteries in CTA. MICCAI (2) (2007)
Michiel Schaap, Ihor Smal, Coert Metz, Theo van Walsum, Wiro J. Niessen
Bayesian Tracking of Elongated Structures in 3D Images. IPMI (2007)
Ihor Smal, Wiro J. Niessen, Erik Meijering
Bayesian tracking for fluorescence microscopic imaging. ISBI (2006)
Erik Meijering, Ihor Smal, Gaudenz Danuser
Tracking in molecular bioimaging. IEEE Signal Process. Mag. 23 (3) (2006)