Juan Eugenio Iglesias

ORCID

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 113

Top Venues

Publications

Lívia Rodrigues, Martina Bocchetta, Oula Puonti, Douglas N. Greve, Ana Carolina Londe, Marcondes França, Simone Appenzeller, Juan Eugenio Iglesias, Letícia Rittner
H-SynEx: Using synthetic images and ultra-high resolution ex vivo MRI for hypothalamus subregion segmentation. CoRR (2024)
Karthik Gopinath, Xiaoling Hu, Malte Hoffmann, Oula Puonti, Juan Eugenio Iglesias
Registration by Regression (RbR): a framework for interpretable and flexible atlas registration. CoRR (2024)
Anahita Fathi Kazerooni, Nastaran Khalili, Deep Gandhi, Xinyang Liu, Zhifan Jiang, Syed Muhammed Anwar, Jake Albrecht, Maruf Adewole, Udunna Anazodo, Hannah Anderson, Sina Bagheri, Ujjwal Baid, Timothy Bergquist, Austin J. Borja, Evan Calabrese, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Ariana Familiar, Keyvan Farahani, Anurag Gottipati, Debanjan Haldar, Shuvanjan Haldar, Juan Eugenio Iglesias, Anastasia Janas, Elaine Johansen, Blaise V. Jones, Neda Khalili, Florian Kofler, Dominic LaBella, Hollie Anne Lai, Koen Van Leemput, Hongwei Bran Li, Nazanin Maleki, Aaron S. McAllister, Zeke Meier, Bjoern H. Menze, Ahmed W. Moawad, Khanak K. Nandolia, Julija Pavaine, Marie Piraud, Tina Poussaint, Sanjay P. Prabhu, Zachary Reitman, Andres Felipe Rodriguez, Jeffrey D. Rudie, Mariana Sanchez-Montano, Ibraheem Salman Shaikh, Lubdha M. Shah, Nakul Sheth, Russel Taki Shinohara, Wenxin Tu, Karthik Viswanathan, Chunhao Wang, Jeffrey B. Ware, Benedikt Wiestler, Walter I. Wiggins, Anna Zapaishchykova, Mariam Aboian, Miriam Bornhorst, Peter de Blank, Michelle Deutsch, Maryam Fouladi, Lindsey Hoffman, Benjamin H. Kann, Margot Lazow, Leonie Mikael, Ali Nabavizadeh, Roger J. Packer, Spyridon Bakas, Adam C. Resnick, Brian Rood, Arastoo Vossough, Marius George Linguraru
The Brain Tumor Segmentation in Pediatrics (BraTS-PEDs) Challenge: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs). CoRR (2024)
Hongwei Bran Li, Cheng Ouyang, Tamaz Amiranashvili, Matthew S. Rosen, Bjoern H. Menze, Juan Eugenio Iglesias
Probabilistic Contrastive Learning with Explicit Concentration on the Hypersphere. CoRR (2024)
Lívia Rodrigues, Martina Bocchetta, Oula Puonti, Douglas N. Greve, Ana Carolina Londe, Marcondes França, Simone Appenzeller, Letícia Rittner, Juan Eugenio Iglesias
High-resolution segmentations of the hypothalamus and its subregions for training of segmentation models. CoRR (2024)
Adria Casamitjana, Juan Eugenio Iglesias, Raúl Tudela, Aida Niñerola-Baizan, Roser Sala-Llonch
JUMP: A joint multimodal registration pipeline for neuroimaging with minimal preprocessing. CoRR (2024)
Xiaoling Hu, Annabel Sorby-Adams, Frederik Barkhof, W. Taylor Kimberly, Oula Puonti, Juan Eugenio Iglesias
P-Count: Persistence-based Counting of White Matter Hyperintensities in Brain MRI. CoRR (2024)
Peirong Liu, Oula Puonti, Annabel Sorby-Adams, William T. Kimberly, Juan Eugenio Iglesias
PEPSI: Pathology-Enhanced Pulse-Sequence-Invariant Representations for Brain MRI. CoRR (2024)
Dominic LaBella, Ujjwal Baid, Omaditya Khanna, Shan McBurney-Lin, Ryan McLean, Pierre Nedelec, Arif Rashid, Nourel Hoda Tahon, Talissa Altes, Radhika Bhalerao, Yaseen Dhemesh, Devon Godfrey, Fathi Hilal, Scott Floyd, Anastasia Janas, Anahita Fathi Kazerooni, John Kirkpatrick, Collin Kent, Florian Kofler, Kevin Leu, Nazanin Maleki, Bjoern H. Menze, Maxence Pajot, Zachary J. Reitman, Jeffrey D. Rudie, Rachit Saluja, Yury Velichko, Chunhao Wang, Pranav Warman, Maruf Adewole, Jake Albrecht, Udunna Anazodo, Syed Muhammad Anwar, Timothy Bergquist, Sully Chen, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Nastaran Khalili, Juan Eugenio Iglesias, Zhifan Jiang, Elaine Johanson, Koen Van Leemput, Hongwei Bran Li, Marius George Linguraru, Xinyang Liu, Aria Mahtabfar, Zeke Meier, Ahmed W. Moawad, John Mongan, Marie Piraud, Russell Takeshi Shinohara, Walter F. Wiggins, Aly H. Abayazeed, Rachel Akinola, András Jakab, Michel Bilello, Maria Correia de Verdier, Priscila Crivellaro, Christos Davatzikos, Keyvan Farahani, John B. Freymann, Christopher Hess, Raymond Y. Huang, Philipp Lohmann, Mana Moassefi, Matthew W. Pease, Philipp Vollmuth, Nico Sollmann, David Diffley, Khanak K. Nandolia, Daniel I. Warren, Ali Hussain, Pascal Fehringer, Yulia Bronstein, Lisa Deptula, Evan G. Stein, Mahsa Taherzadeh, Eduardo Portela de Oliveira, Aoife Haughey, Marinos Kontzialis, Luca Saba, Benjamin Turner, Melanie M. T. Brüßeler, Shehbaz Ansari, Athanasios Gkampenis, David Maximilian Weiss, Aya Mansour, Islam H. Shawali, Nikolay Yordanov, Joel M. Stein, Roula Hourani, Mohammed Yahya Moshebah, Ahmed Magdy Abouelatta, Tanvir Rizvi, Klara Willms, Dann C. Martin, Abdullah Okar
Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge. CoRR (2024)
Maria Correia de Verdier, Rachit Saluja, Louis Gagnon, Dominic LaBella, Ujjwal Baid, Nourel Hoda Tahon, Martha Foltyn-Dumitru, Jikai Zhang, Maram Alafif, Saif Baig, Ken Chang, Gennaro D'Anna, Lisa Deptula, Diviya Gupta, Muhammad Ammar Haider, Ali Hussain, Michael Iv, Marinos Kontzialis, Paul Manning, Farzan Moodi, Teresa Nunes, Aaron Simon, Nico Sollmann, David Vu, Maruf Adewole, Jake Albrecht, Udunna Anazodo, Rongrong Chai, Verena Chung, Shahriar Faghani, Keyvan Farahani, Anahita Fathi Kazerooni, Juan Eugenio Iglesias, Florian Kofler, Hongwei Li, Marius George Linguraru, Bjoern H. Menze, Ahmed W. Moawad, Yury Velichko, Benedikt Wiestler, Talissa Altes, Patil Basavasagar, Martin Bendszus, Gianluca Brugnara, Jaeyoung Cho, Yaseen Dhemesh, Brandon K. K. Fields, Filip Garrett, Jaime Gass, Lubomir M. Hadjiiski, Jona A. Hattangadi-Gluth, Christopher Hess, Jessica L. Houk, Edvin Isufi, Lester J. Layfield, George Mastorakos, John Mongan, Pierre Nedelec, Uyen Nguyen, Sebastian Oliva, Matthew W. Pease, Aditya Rastogi, Jason Sinclair, Robert X. Smith, Leo P. Sugrue, Jonathan Thacker, Igor Vidic, Javier E. Villanueva-Meyer, Nathan S. White, Mariam Aboian, Gian Marco Conte, Anders M. Dale, Mert R. Sabuncu, Tyler M. Seibert, Brent Weinberg, Aly H. Abayazeed, Raymond Y. Huang, Sevcan Turk, Andreas M. Rauschecker, Nikdokht Farid, Philipp Vollmuth, Ayman Nada, Spyridon Bakas, Evan Calabrese, Jeffrey D. Rudie
The 2024 Brain Tumor Segmentation (BraTS) Challenge: Glioma Segmentation on Post-treatment MRI. CoRR (2024)
Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu, Debanjan Haldar, Zhifan Jiang, Anna Zapaishchykova, Julija Pavaine, Lubdha M. Shah, Blaise V. Jones, Nakul Sheth, Sanjay P. Prabhu, Aaron S. McAllister, Wenxin Tu, Khanak K. Nandolia, Andres Felipe Rodriguez, Ibraheem Salman Shaikh, Mariana Sanchez-Montano, Hollie Anne Lai, Maruf Adewole, Jake Albrecht, Udunna Anazodo, Hannah Anderson, Syed Muhammed Anwar, Alejandro Aristizabal, Sina Bagheri, Ujjwal Baid, Timothy Bergquist, Austin J. Borja, Evan Calabrese, Verena Chung, Gian Marco Conte, James A. Eddy, Ivan Ezhov, Ariana M. Familiar, Keyvan Farahani, Deep Gandhi, Anurag Gottipati, Shuvanjan Haldar, Juan Eugenio Iglesias, Anastasia Janas, Elaine Elaine, Alexandros Karargyris, Hasan Kassem, Neda Khalili, Florian Kofler, Dominic LaBella, Koen Van Leemput, Hongwei Li, Nazanin Maleki, Zeke Meier, Bjoern H. Menze, Ahmed W. Moawad, Sarthak Pati, Marie Piraud, Tina Poussaint, Zachary J. Reitman, Jeffrey D. Rudie, Rachit Saluja, Micah J. Sheller, Russell Takeshi Shinohara, Karthik Viswanathan, Chunhao Wang, Benedikt Wiestler, Walter F. Wiggins, Christos Davatzikos, Phillip B. Storm, Miriam Bornhorst, Roger J. Packer, Trent Hummel, Peter de Blank, Lindsey Hoffman, Mariam Aboian, Ali Nabavizadeh, Jeffrey B. Ware, Benjamin H. Kann, Brian Rood, Adam C. Resnick, Spyridon Bakas, Arastoo Vossough, Marius George Linguraru
BraTS-PEDs: Results of the Multi-Consortium International Pediatric Brain Tumor Segmentation Challenge 2023. CoRR (2024)
Matthew Leming, Esther E. Bron, Rose Bruffaerts, Yangming Ou, Juan Eugenio Iglesias, Randy L. Gollub, Hyungsoon Im
Challenges of implementing computer-aided diagnostic models for neuroimages in a clinical setting. npj Digit. Medicine 6 (2023)
Karthik Gopinath, Douglas N. Greve, Sudeshna Das, Steven E. Arnold, Colin G. Magdamo, Juan Eugenio Iglesias
Cortical analysis of heterogeneous clinical brain MRI scans for large-scale neuroimaging studies. CoRR (2023)
Pablo Laso, Stefano Cerri, Annabel Sorby-Adams, Jennifer Guo, Farrah Mateen, Philipp Goebl, Jiaming Wu, Peirong Liu, Hongwei Li, Sean I. Young, Benjamin Billot, Oula Puonti, Gordon Sze, Sam Payabavash, Adam DeHavenon, Kevin N. Sheth, Matthew S. Rosen, John Kirsch, Nicola Strisciuglio, Jelmer M. Wolterink, Arman Eshaghi, Frederik Barkhof, W. Taylor Kimberly, Juan Eugenio Iglesias
Quantifying white matter hyperintensity and brain volumes in heterogeneous clinical and low-field portable MRI. CoRR (2023)
Henry F. J. Tregidgo, Sonja Soskic, Juri Althonayan, Chiara Maffei, Koen Van Leemput, Polina Golland, Ricardo Insausti, Garikoitz Lerma-Usabiaga, César Caballero-Gaudes, Pedro M. Paz-Alonso, Anastasia Yendiki, Daniel C. Alexander, Martina Bocchetta, Jonathan D. Rohrer, Juan Eugenio Iglesias
Accurate Bayesian segmentation of thalamic nuclei using diffusion MRI and an improved histological atlas. NeuroImage 274 (2023)
Hannah Spitzer, Mathilde Ripart, Abdulah Fawaz, Logan Z. J. Williams, MELD project, Emma C. Robinson, Juan Eugenio Iglesias, Sophie Adler, Konrad Wagstyl
Robust and Generalisable Segmentation of Subtle Epilepsy-causing Lesions: a Graph Convolutional Approach. CoRR (2023)
Hongwei Bran Li, Matthew S. Rosen, Shahin Nasr, Juan Eugenio Iglesias
Resolution- and Stimulus-agnostic Super-Resolution of Ultra-High-Field Functional MRI: Application to Visual Studies. CoRR (2023)
Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu, Debanjan Haldar, Zhifan Jiang, Syed Muhammad Anwar, Jake Albrecht, Maruf Adewole, Udunna Anazodo, Hannah Anderson, Sina Bagheri, Ujjwal Baid, Timothy Bergquist, Evan Calabrese, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Ariana Familiar, Keyvan Farahani, Shuvanjan Haldar, Juan Eugenio Iglesias, Anastasia Janas, Elaine Johanson, Florian Kofler, Dominic LaBella, Koen Van Leemput, Hongwei Bran Li, Nazanin Maleki, Zeke Meier, Bjoern H. Menze, Ahmed W. Moawad, Marie Piraud, Tina Poussaint, Zachary Reitman, Jeffrey D. Rudie, Ibraheem Salman Shaikh, Russel Taki Shinohara, Wenxin Tu, Karthik Viswanathan, Chunhao Wang, Jeffrey B. Ware, Benedikt Wiestler, Walter I. Wiggins, Anna Zapaishchykova, Mariam Aboian, Miriam Bornhorst, Peter de Blank, Michelle Deutsch, Maryam Fouladi, Lindsey Hoffman, Benjamin H. Kann, Margot Lazow, Leonie Mikael, Ali Nabavizadeh, Roger J. Packer, Adam Resnick, Brian Rood, Arastoo Vossough, Spyridon Bakas, Marius George Linguraru
The Brain Tumor Segmentation (BraTS) Challenge 2023: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs). CoRR (2023)
Matthew G. French, Gonzalo D. Maso Talou, Thiranja P. Babarenda Gamage, Martyn P. Nash, Poul M. F. Nielsen, Anthony J. Doyle, Juan Eugenio Iglesias, Yaël Balbastre, Sean I. Young
Diffeomorphic Multi-Resolution Deep Learning Registration for Applications in Breast MRI. CoRR (2023)
Florian Kofler, Felix Meissen, Felix Steinbauer, Robert Graf, Eva Oswald, Ezequiel de la Rosa, Hongwei Bran Li, Ujjwal Baid, Florian A. Hölzl, Oezguen Turgut, Izabela Horvath, Diana Waldmannstetter, Christina Bukas, Maruf Adewole, Syed Muhammad Anwar, Anastasia Janas, Anahita Fathi Kazerooni, Dominic LaBella, Ahmed W. Moawad, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Farouk Dako, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Gian Marco Conte, Elaine Johanson, Zeke Meier, Christos Davatzikos, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Suyash Mohan, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, Errol Colak, Priscila Crivellaro, András Jakab, Jake Albrecht, Udunna Anazodo, Mariam Aboian, Juan Eugenio Iglesias, Koen Van Leemput, Spyridon Bakas, Daniel Rueckert, Benedikt Wiestler, Ivan Ezhov, Marie Piraud, Bjoern H. Menze
The Brain Tumor Segmentation (BraTS) Challenge 2023: Local Synthesis of Healthy Brain Tissue via Inpainting. CoRR (2023)
Peirong Liu, Oula Puonti, Xiaoling Hu, Daniel C. Alexander, Juan Eugenio Iglesias
Brain-ID: Learning Robust Feature Representations for Brain Imaging. CoRR (2023)
Adrià Casamitjana, Roser Sala-Llonch, Karim Lekadir, Juan Eugenio Iglesias
USLR: an open-source tool for unbiased and smooth longitudinal registration of brain MR. CoRR (2023)
Hannah Spitzer, Mathilde Ripart, Abdulah Fawaz, Logan Z. J. Williams, Emma C. Robinson, Juan Eugenio Iglesias, Sophie Adler, Konrad Wagstyl
Robust and Generalisable Segmentation of Subtle Epilepsy-Causing Lesions: A Graph Convolutional Approach. MICCAI (8) (2023)
Maruf Adewole, Jeffrey D. Rudie, Anu Gbadamosi, Oluyemisi Toyobo, Raymond Confidence, Dong Zhang, Olubukola Omidiji, Rachel Akinola, Mohammad Abba Suwaid, Adaobi Emegoakor, Nancy Ojo, Kenneth Aguh, Chinasa Kalaiwo, Gabriel Babatunde, Afolabi Ogunleye, Yewande Gbadamosi, Kator Iorpagher, Evan Calabrese, Mariam Aboian, Marius George Linguraru, Jake Albrecht, Benedikt Wiestler, Florian Kofler, Anastasia Janas, Dominic LaBella, Anahita Fathi Kazerooni, Hongwei Bran Li, Juan Eugenio Iglesias, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Koen Van Leemput, Christina Bukas, Marie Piraud, Gian Marco Conte, Elaine Johanson, Zeke Meier, Bjoern H. Menze, Ujjwal Baid, Spyridon Bakas, Farouk Dako, Abiodun Fatade, Udunna Anazodo
The Brain Tumor Segmentation (BraTS) Challenge 2023: Glioma Segmentation in Sub-Saharan Africa Patient Population (BraTS-Africa). CoRR (2023)
Henry F. J. Tregidgo, Sonja Soskic, Mark D. Olchanyi, Juri Althonayan, Benjamin Billot, Chiara Maffei, Polina Golland, Anastasia Yendiki, Daniel C. Alexander, Martina Bocchetta, Jonathan D. Rohrer, Juan Eugenio Iglesias
Domain-Agnostic Segmentation of Thalamic Nuclei from Joint Structural and Diffusion MRI. MICCAI (8) (2023)
Henry F. J. Tregidgo, Sonja Soskic, Mark D. Olchanyi, Juri Althonayan, Benjamin Billot, Chiara Maffei, Polina Golland, Anastasia Yendiki, Daniel C. Alexander, Martina Bocchetta, Jonathan D. Rohrer, Juan Eugenio Iglesias
Domain-agnostic segmentation of thalamic nuclei from joint structural and diffusion MRI. CoRR (2023)
Dominic LaBella, Maruf Adewole, Michelle Alonso-Basanta, Talissa Altes, Syed Muhammad Anwar, Ujjwal Baid, Timothy Bergquist, Radhika Bhalerao, Sully Chen, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Devon Godfrey, Fathi Hilal, Ariana Familiar, Keyvan Farahani, Juan Eugenio Iglesias, Zhifan Jiang, Elaine Johanson, Anahita Fathi Kazerooni, Collin Kent, John Kirkpatrick, Florian Kofler, Koen Van Leemput, Hongwei Bran Li, Xinyang Liu, Aria Mahtabfar, Shan McBurney-Lin, Ryan McLean, Zeke Meier, Ahmed W. Moawad, John Mongan, Pierre Nedelec, Maxence Pajot, Marie Piraud, Arif Rashid, Zachary Reitman, Russell Takeshi Shinohara, Yury Velichko, Chunhao Wang, Pranav I. Warman, Walter I. Wiggins, Mariam Aboian, Jake Albrecht, Udunna Anazodo, Spyridon Bakas, Adam E. Flanders, Anastasia Janas, Goldey Khanna, Marius George Linguraru, Bjoern H. Menze, Ayman Nada, Andreas M. Rauschecker, Jeffrey D. Rudie, Nourel Hoda Tahon, Javier E. Villanueva-Meyer, Benedikt Wiestler, Evan Calabrese
The ASNR-MICCAI Brain Tumor Segmentation (BraTS) Challenge 2023: Intracranial Meningioma. CoRR (2023)
Junshen Xu, Daniel Moyer, Borjan A. Gagoski, Juan Eugenio Iglesias, Patricia Ellen Grant, Polina Golland, Elfar Adalsteinsson
NeSVoR: Implicit Neural Representation for Slice-to-Volume Reconstruction in MRI. IEEE Trans. Medical Imaging 42 (6) (2023)
Sean I. Young, Yaël Balbastre, Bruce Fischl, Polina Golland, Juan Eugenio Iglesias
Fully Convolutional Slice-to-Volume Reconstruction for Single-Stack MRI. CoRR (2023)
Hongwei Bran Li, Syed Muhammad Anwar, Gian Marco Conte, Florian Kofler, Koen Van Leemput, Marie Piraud, Ivan Ezhov, Felix Meissen, Maruf Adewole, Anastasia Janas, Anahita Fathi Kazerooni, Dominic LaBella, Ahmed W. Moawad, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Farouk Dako, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Elaine Johanson, Zeke Meier, Christos Davatzikos, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Suyash Mohan, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, Errol Colak, Priscila Crivellaro, András Jakab, Jake Albrecht, Udunna Anazodo, Mariam Aboian, Thomas Yu, Verena Chung, Timothy Bergquist, James A. Eddy, Jake Albrecht, Ujjwal Baid, Spyridon Bakas, Marius George Linguraru, Bjoern H. Menze, Juan Eugenio Iglesias, Benedikt Wiestler
The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn). CoRR (2023)
Karthik Gopinath, Douglas N. Greve, Sudeshna Das, Steven E. Arnold, Colin G. Magdamo, Juan Eugenio Iglesias
Cortical Analysis of Heterogeneous Clinical Brain MRI Scans for Large-Scale Neuroimaging Studies. MICCAI (8) (2023)
Benjamin Billot, Douglas N. Greve, Oula Puonti, Axel Thielscher, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Juan Eugenio Iglesias
SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining. Medical Image Anal. 86 (2023)
Benjamin Billot, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Juan Eugenio Iglesias
Robust machine learning segmentation for large-scale analysis of heterogeneous clinical brain MRI datasets. CoRR (2022)
Sean I. Young, Adrian V. Dalca, Enzo Ferrante, Polina Golland, Bruce Fischl, Juan Eugenio Iglesias
SUD: Supervision by Denoising for Medical Image Segmentation. CoRR (2022)
Junshen Xu, Daniel Moyer, Patricia Ellen Grant, Polina Golland, Juan Eugenio Iglesias, Elfar Adalsteinsson
SVoRT: Iterative Transformer for Slice-to-Volume Registration in Fetal Brain MRI. MICCAI (6) (2022)
Andrew Hoopes, Juan Eugenio Iglesias, Bruce Fischl, Douglas N. Greve, Adrian V. Dalca
TopoFit: Rapid Reconstruction of Topologically-Correct Cortical Surfaces. MIDL (2022)
Sean I. Young, Yaël Balbastre, Adrian V. Dalca, William M. Wells III, Juan Eugenio Iglesias, Bruce Fischl
SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration. WBIR (2022)
Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. Medical Image Anal. 75 (2022)
Juan Eugenio Iglesias, Riana Schleicher, Sonia Laguna, Benjamin Billot, Pamela Schaefer, Brenna McKaig, Joshua N. Goldstein, Kevin N. Sheth, Matthew S. Rosen, W. Taylor Kimberly
Accurate super-resolution low-field brain MRI. CoRR (2022)
Junshen Xu, Daniel Moyer, Patricia Ellen Grant, Polina Golland, Juan Eugenio Iglesias, Elfar Adalsteinsson
SVoRT: Iterative Transformer for Slice-to-Volume Registration in Fetal Brain MRI. CoRR (2022)
Nalini M. Singh, Jordan B. Harrod, Sandya Subramanian, Mitchell Robinson, Ken Chang, Suheyla Cetin Karayumak, Adrian Vasile Dalca, Simon Eickhoff, Michael Fox, Loraine Franke, Polina Golland, Daniel Haehn, Juan Eugenio Iglesias, Lauren J. O'Donnell, Yangming Ou, Yogesh Rathi, Shan H. Siddiqi, Haoqi Sun, M. Brandon Westover, Susan L. Whitfield-Gabrieli, Randy L. Gollub
How Machine Learning is Powering Neuroimaging to Improve Brain Health. Neuroinformatics 20 (4) (2022)
Benjamin Billot, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Juan Eugenio Iglesias
Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and No Retraining. MICCAI (5) (2022)
Sean I. Young, Yaël Balbastre, Adrian V. Dalca, William M. Wells III, Juan Eugenio Iglesias, Bruce Fischl
SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration. CoRR (2022)
Benjamin Billot, Magdamo Colin, Sean E. Arnold, Sudeshna Das, Juan Eugenio Iglesias
Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining. CoRR (2022)
Adrià Casamitjana, Juan Eugenio Iglesias
High-resolution atlasing and segmentation of the subcortex: Review and perspective on challenges and opportunities created by machine learning. NeuroImage 263 (2022)
Hongwei Bran Li, Chinmay Prabhakar, Suprosanna Shit, Johannes C. Paetzold, Tamaz Amiranashvili, Jianguo Zhang, Daniel Rueckert, Juan Eugenio Iglesias, Benedikt Wiestler, Bjoern H. Menze
A Domain-specific Perceptual Metric via Contrastive Self-supervised Representation: Applications on Natural and Medical Images. CoRR (2022)
Malte Hoffmann, Benjamin Billot, Douglas N. Greve, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca
SynthMorph: Learning Contrast-Invariant Registration Without Acquired Images. IEEE Trans. Medical Imaging 41 (3) (2022)
Alessia Atzeni, Loïc Peter, Eleanor D. Robinson, Emily Blackburn, Juri Althonayan, Daniel C. Alexander, Juan Eugenio Iglesias
Deep active learning for suggestive segmentation of biomedical image stacks via optimisation of Dice scores and traced boundary length. Medical Image Anal. 81 (2022)
Benjamin Billot, Stefano Cerri, Koen Van Leemput, Adrian V. Dalca, Juan Eugenio Iglesias
Joint Segmentation Of Multiple Sclerosis Lesions And Brain Anatomy In MRI Scans Of Any Contrast And Resolution With CNNs. ISBI (2021)
Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, Azadeh Tabari, John Conklin, R. Gilberto González, Daniel C. Alexander, Polina Golland, Brian L. Edlow, Bruce Fischl
Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. NeuroImage 237 (2021)
Adrià Casamitjana, Matteo Mancini, Juan Eugenio Iglesias
Synth-by-Reg (SbR): Contrastive Learning for Synthesis-Based Registration of Paired Images. SASHIMI@MICCAI (2021)
Donatas Sederevicius, Dídac Vidal-Piñeiro, Øystein Sørensen, Koenraad Van Leemput, Juan Eugenio Iglesias, Adrian V. Dalca, Douglas N. Greve, Bruce Fischl, Atle Bjørnerud, Kristine B. Walhovd, Anders M. Fjell
Reliability and sensitivity of two whole-brain segmentation approaches included in FreeSurfer - ASEG and SAMSEG. NeuroImage 237 (2021)
Adrià Casamitjana, Matteo Mancini, Juan Eugenio Iglesias
Synth-by-Reg (SbR): Contrastive learning for synthesis-based registration of paired images. CoRR (2021)
Benjamin Billot, Douglas N. Greve, Oula Puonti, Axel Thielscher, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Juan Eugenio Iglesias
SynthSeg: Domain Randomisation for Segmentation of Brain MRI Scans of any Contrast and Resolution. CoRR (2021)
Chao J. Liu, William Ammon, Viviana Siless, Morgan Fogarty, Ruopeng Wang, Alessia Atzeni, Iman Aganj, Juan Eugenio Iglesias, Lilla Zöllei, Bruce Fischl, Jeremy D. Schmahmann, Hui Wang
Quantification of volumetric morphometry and optical property in the cortex of human cerebellum at micrometer resolution. NeuroImage 244 (2021)
Malte Hoffmann, Benjamin Billot, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca
Learning Mri Contrast-Agnostic Registration. ISBI (2021)
Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. CoRR (2021)
Douglas N. Greve, Benjamin Billot, Devani Cordero, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Bruce Fischl, Juan Eugenio Iglesias, Jean C. Augustinack
A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images. NeuroImage 244 (2021)
Loïc Peter, Daniel C. Alexander, Caroline Magnain, Juan Eugenio Iglesias
Uncertainty-Aware Annotation Protocol to Evaluate Deformable Registration Algorithms. CoRR (2021)
Loïc Peter, Daniel C. Alexander, Caroline Magnain, Juan Eugenio Iglesias
Uncertainty-Aware Annotation Protocol to Evaluate Deformable Registration Algorithms. IEEE Trans. Medical Imaging 40 (8) (2021)
Iman Aganj, Aina Frau-Pascual, Juan Eugenio Iglesias, Anastasia Yendiki, Jean C. Augustinack, David H. Salat, Bruce Fischl
Compensatory Brain Connection Discovery in Alzheimer's Disease. ISBI (2020)
Benjamin Billot, Eleanor D. Robinson, Adrian V. Dalca, Juan Eugenio Iglesias
Partial Volume Segmentation of Brain MRI Scans of any Resolution and Contrast. CoRR (2020)
Benjamin Billot, Eleanor D. Robinson, Adrian V. Dalca, Juan Eugenio Iglesias
Partial Volume Segmentation of Brain MRI Scans of Any Resolution and Contrast. MICCAI (7) (2020)
Henry F. J. Tregidgo, Adrià Casamitjana, Caitlin Latimer, Mitchell Kilgore, Eleanor D. Robinson, Emily Blackburn, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Christine L. Mac Donald, Dirk Keene, Juan Eugenio Iglesias
3D Reconstruction and Segmentation of Dissection Photographs for MRI-Free Neuropathology. MICCAI (5) (2020)
Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. 5 (55) (2020)
Evan M. Yu, Juan Eugenio Iglesias, Adrian V. Dalca, Mert R. Sabuncu
An Auto-Encoder Strategy for Adaptive Image Segmentation. CoRR (2020)
Malte Hoffmann, Benjamin Billot, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca
Learning Multi-Modal Image Registration without Real Data. CoRR (2020)
Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
DeepReg: a deep learning toolkit for medical image registration. CoRR (2020)
Benjamin Billot, Douglas N. Greve, Koen Van Leemput, Bruce Fischl, Juan Eugenio Iglesias, Adrian V. Dalca
A Learning Strategy for Contrast-agnostic MRI Segmentation. MIDL (2020)
Benjamin Billot, Martina Bocchetta, Emily Todd, Adrian V. Dalca, Jonathan D. Rohrer, Juan Eugenio Iglesias
Automated segmentation of the hypothalamus and associated subunits in brain MRI. NeuroImage 223 (2020)
Nalini M. Singh, Juan Eugenio Iglesias, Elfar Adalsteinsson, Adrian V. Dalca, Polina Golland
Joint Frequency- and Image-Space Learning for Fourier Imaging. CoRR (2020)
Lilla Zöllei, Juan Eugenio Iglesias, Yangming Ou, Patricia Ellen Grant, Bruce Fischl
Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years. NeuroImage 218 (2020)
Henry F. J. Tregidgo, Adria Casamitjana, Caitlin Latimer, Mitchell Kilgore, Eleanor D. Robinson, Emily Blackburn, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Christine L. Mac Donald, Dirk Keene, Juan Eugenio Iglesias
3D Reconstruction and Segmentation of Dissection Photographs for MRI-free Neuropathology. CoRR (2020)
Emma M. Brown, Meghan E. Pierce, Dustin C. Clark, Bruce R. Fischl, Juan Eugenio Iglesias, William P. Milberg, Regina E. McGlinchey, David H. Salat
Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners. NeuroImage 210 (2020)
Benjamin Billot, Douglas N. Greve, Koen Van Leemput, Bruce Fischl, Juan Eugenio Iglesias, Adrian V. Dalca
A Learning Strategy for Contrast-agnostic MRI Segmentation. CoRR (2020)
Loïc Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, Jan Deprest, Sébastien Ourselin, Juan Eugenio Iglesias, Tom Vercauteren
Active Annotation of Informative Overlapping Frames in Video Mosaicking Applications. CoRR (2020)
Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, Azadeh Tabari, John Conklin, Daniel C. Alexander, Polina Golland, Brian L. Edlow, Bruce Fischl
Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. CoRR (2020)
Evan M. Yu, Juan Eugenio Iglesias, Adrian V. Dalca, Mert R. Sabuncu
An Auto-Encoder Strategy for Adaptive Image Segmentation. MIDL (2020)
Adrian V. Dalca, Evan M. Yu, Polina Golland, Bruce Fischl, Mert R. Sabuncu, Juan Eugenio Iglesias
Unsupervised deep learning for Bayesian brain MRI segmentation. CoRR (2019)
Juan Eugenio Iglesias, Koen Van Leemput, Polina Golland, Anastasia Yendiki
Joint Inference on Structural and Diffusion MRI for Sequence-Adaptive Bayesian Segmentation of Thalamic Nuclei with Probabilistic Atlases. IPMI (2019)
Stephen Morrell, Zbigniew Wojna, Can Son Khoo, Sébastien Ourselin, Juan Eugenio Iglesias
Large-scale mammography CAD with Deformable Conv-Nets. CoRR (2019)
Adrian V. Dalca, Evan M. Yu, Polina Golland, Bruce Fischl, Mert R. Sabuncu, Juan Eugenio Iglesias
Unsupervised Deep Learning for Bayesian Brain MRI Segmentation. MICCAI (3) (2019)
Juan Eugenio Iglesias, Koen Van Leemput, Polina Golland, Anastasia Yendiki
Joint inference on structural and diffusion MRI for sequence-adaptive Bayesian segmentation of thalamic nuclei with probabilistic atlases. CoRR (2019)
Matteo Mancini, Shauna Crampsie, David L. Thomas, Zane Jaunmuktane, Janice L. Holton, Juan Eugenio Iglesias
Hierarchical Joint Registration of Tissue Blocks With Soft Shape Constraints For Large-Scale Histology of The Human Brain. ISBI (2019)
Sebastiano Ferraris, Johannes L. van der Merwe, Lennart Van Der Veeken, Ferran Prados, Juan Eugenio Iglesias, Andrew Melbourne, Marco Lorenzi, Marc Modat, Willy Gsell, Jan Deprest, Tom Vercauteren
A magnetic resonance multi-atlas for the neonatal rabbit brain. NeuroImage 179 (2018)
Stephen Morrell, Zbigniew Wojna, Can Son Khoo, Sébastien Ourselin, Juan Eugenio Iglesias
Large-Scale Mammography CAD with Deformable Conv-Nets. RAMBO+BIA+TIA@MICCAI (2018)
Juan Eugenio Iglesias, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren
Model-Based Refinement of Nonlinear Registrations in 3D Histology Reconstruction. MICCAI (2) (2018)
Marcel Tella-Amo, Loïc Peter, Dzhoshkun I. Shakir, Jan Deprest, Danail Stoyanov, Juan Eugenio Iglesias, Tom Vercauteren, Sébastien Ourselin
Technical note: probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking. Application to fetoscopy. Medical Imaging: Image-Guided Procedures (2018)
Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed Lein, Bruce Fischl, Sébastien Ourselin
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. CoRR (2018)
Juan Eugenio Iglesias, Ricardo Insausti, Garikoitz Lerma-Usabiaga, Martina Bocchetta, Koen Van Leemput, Douglas N. Greve, André J. W. van der Kouwe, Bruce Fischl, César Caballero-Gaudes, Pedro M. Paz-Alonso
A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. CoRR (2018)
Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed Lein, Bruce Fischl, Sébastien Ourselin
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. Medical Image Anal. 50 (2018)
Alessia Atzeni, Marnix Jansen, Sébastien Ourselin, Juan Eugenio Iglesias
A Probabilistic Model Combining Deep Learning and Multi-atlas Segmentation for Semi-automated Labelling of Histology. MICCAI (2) (2018)
Juan Eugenio Iglesias, Ricardo Insausti, Garikoitz Lerma-Usabiaga, Martina Bocchetta, Koen Van Leemput, Douglas N. Greve, André J. W. van der Kouwe, Bruce Fischl, César Caballero-Gaudes, Pedro M. Paz-Alonso
MRI and histology. NeuroImage 183 (2018)
Ignacio Arganda-Carreras, Tudor Manoliu, Nicolas Mazuras, Florian Schulze, Juan Eugenio Iglesias, Katja Bühler, Arnim Jenett, François Rouyer, Philippe Andrey
A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain. Frontiers Neuroinformatics 12 (2018)
Jonas Pichat, Juan Eugenio Iglesias, Tarek A. Yousry, Sébastien Ourselin, Marc Modat
A Survey of Methods for 3D Histology Reconstruction. Medical Image Anal. 46 (2018)
Jonas Pichat, Juan Eugenio Iglesias, Sotiris Nousias, Tarek A. Yousry
Part-to-Whole Registration of Histology and MRI Using Shape Elements. ICCV Workshops (2017)
Iman Aganj, Juan Eugenio Iglesias, Martin Reuter, Mert Rory Sabuncu, Bruce Fischl
Mid-space-independent deformable image registration. NeuroImage 152 (2017)
Juan Eugenio Iglesias, Garikoitz Lerma-Usabiaga, Luis C. García-Peraza-Herrera, Sara Martinez, Pedro M. Paz-Alonso
Retrospective Head Motion Estimation in Structural Brain MRI with 3D CNNs. MICCAI (2) (2017)
Juan Eugenio Iglesias
Globally Optimal Coupled Surfaces for Semi-automatic Segmentation of Medical Images. IPMI (2017)
Jonas Pichat, Juan Eugenio Iglesias, Sotiris Nousias, Tarek A. Yousry, Sébastien Ourselin, Marc Modat
Part-to-whole Registration of Histology and MRI using Shape Elements. CoRR (2017)

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Juan Eugenio Iglesias