Dean C. Barratt

ORCID

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 107

Top Venues

CoRR

Medical Image Anal.

Medical Imaging: Image-Guided Procedures

Int. J. Comput. Assist. Radiol. Surg.

Publications

Iani J. M. B. Gayo, Shaheer U. Saeed, Ester Bonmati, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy. Int. J. Comput. Assist. Radiol. Surg. 19 (6) (2024)
Yinsong Xu, Yipei Wang, Ziyi Shen, Iani J. M. B. Gayo, Natasha Thorley, Shonit Punwani, Aidong Men, Dean C. Barratt, Qingchao Chen, Yipeng Hu
Poisson Ordinal Network for Gleason Group Estimation Using Bi-Parametric MRI. CoRR (2024)
Shiqi Huang, Tingfa Xu, Ziyi Shen, Shaheer Ullah Saeed, Wen Yan, Dean C. Barratt, Yipeng Hu
One registration is worth two segmentations. CoRR (2024)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Long-Term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. IEEE Trans. Biomed. Eng. 71 (3) (2024)
Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Dean C. Barratt, Victor A. Prisacariu, Yipeng Hu
Semi-weakly-supervised neural network training for medical image registration. CoRR (2024)
Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
Weakly supervised localisation of prostate cancer using reinforcement learning for bi-parametric MR images. CoRR (2024)
Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
Active learning using adaptable task-based prioritisation. Medical Image Anal. 95 (2024)
Qi Li, Ziyi Shen, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Nonrigid Reconstruction of Freehand Ultrasound without a Tracker. CoRR (2024)
Shaheer U. Saeed, Shiqi Huang, João Ramalhinho, Iani J. M. B. Gayo, Nina Montaña Brown, Ester Bonmati, Stephen P. Pereira, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
Competing for pixels: a self-play algorithm for weakly-supervised segmentation. CoRR (2024)
Wen Yan, Bernard Chiu, Ziyi Shen, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, David Atkinson, Dean C. Barratt, Yipeng Hu
Combiner and HyperCombiner networks: Rules to combine multimodality MR images for prostate cancer localisation. Medical Image Anal. 91 (2024)
Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
Biomechanics-informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity. CoRR (2024)
Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. MLMI@MICCAI (1) (2023)
Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
Non-rigid Medical Image Registration using Physics-informed Neural Networks. CoRR (2023)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Long-term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. CoRR (2023)
Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
Non-rigid Medical Image Registration using Physics-informed Neural Networks. IPMI (2023)
Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew John Clarkson, Dean C. Barratt, Yipeng Hu
Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. MIDL (2023)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. CoRR (2023)
Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. CoRR (2023)
Wen Yan, Bernard Chiu, Ziyi Shen, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, David Atkinson, Dean C. Barratt, Yipeng Hu
Combiner and HyperCombiner Networks: Rules to Combine Multimodality MR Images for Prostate Cancer Localisation. CoRR (2023)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames. ISBI (2023)
Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. CoRR (2023)
Mark A. Pinnock, Yipeng Hu, Steve Bandula, Dean C. Barratt
Multi-phase synthetic contrast enhancement in interventional computed tomography for guiding renal cryotherapy. Int. J. Comput. Assist. Radiol. Surg. 18 (8) (2023)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. ASMUS@MICCAI (2023)
Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt
Meta-Learning Initializations for Interactive Medical Image Registration. IEEE Trans. Medical Imaging 42 (3) (2023)
Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. Medical Image Anal. 90 (2023)
Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
Strategising template-guided needle placement for MR-targeted prostate biopsy. CoRR (2022)
Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
Active learning using adaptable task-based prioritisation. CoRR (2022)
Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt
Meta-registration: Learning Test-Time Optimization for Single-Pair Image Registration. ASMUS@MICCAI (2022)
Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu
Cross-Modality Image Registration Using a Training-Time Privileged Third Modality. IEEE Trans. Medical Imaging 41 (11) (2022)
Ester Bonmati, Yipeng Hu, Alexander Grimwood, Gavin J. Johnson, George Goodchild, Margaret G. Keane, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt
Voice-Assisted Image Labeling for Endoscopic Ultrasound Classification Using Neural Networks. IEEE Trans. Medical Imaging 41 (6) (2022)
Sulaiman Vesal, Iani J. M. B. Gayo, Indrani Bhattacharya, Shyam Natarajan, Leonard S. Marks, Dean C. Barratt, Richard E. Fan, Yipeng Hu, Geoffrey A. Sonn, Mirabela Rusu
Domain Generalization for Prostate Segmentation in Transrectal Ultrasound Images: A Multi-center Study. CoRR (2022)
Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. CoRR (2022)
Ziyi Shen, Qianye Yang, Yuming Shen, Francesco Giganti, Vasilis Stavrinides, Richard E. Fan, Caroline M. Moore, Mirabela Rusu, Geoffrey A. Sonn, Philip H. S. Torr, Dean C. Barratt, Yipeng Hu
Collaborative Quantization Embeddings for Intra-Subject Prostate MR Image Registration. CoRR (2022)
Wen Yan, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, Dean C. Barratt, Bernard Chiu, Yipeng Hu
The impact of using voxel-level segmentation metrics on evaluating multifocal prostate cancer localisation. CoRR (2022)
Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu
Cross-Modality Image Registration using a Training-Time Privileged Third Modality. CoRR (2022)
Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy. CaPTion@MICCAI (2022)
Yiwen Li, Yunguan Fu, Qianye Yang, Zhe Min, Wen Yan, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
FEW-SHOT Image Segmentation for Cross-Institution Male Pelvic Organs Using Registration-Assisted Prototypical Learning. ISBI (2022)
Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt
Meta-Registration: Learning Test-Time Optimization for Single-Pair Image Registration. CoRR (2022)
Zachary M. C. Baum, Tamas Ungi, Christopher Schlenger, Yipeng Hu, Dean C. Barratt
Learning Generalized Non-Rigid Multimodal Biomedical Image Registration from Generic Point Set Data. CoRR (2022)
Ziyi Shen, Qianye Yang, Yuming Shen, Francesco Giganti, Vasilis Stavrinides, Richard E. Fan, Caroline M. Moore, Mirabela Rusu, Geoffrey A. Sonn, Philip H. S. Torr, Dean C. Barratt, Yipeng Hu
Collaborative Quantization Embeddings for Intra-subject Prostate MR Image Registration. MICCAI (6) (2022)
Sulaiman Vesal, Iani J. M. B. Gayo, Indrani Bhattacharya, Shyam Natarajan, Leonard S. Marks, Dean C. Barratt, Richard E. Fan, Yipeng Hu, Geoffrey A. Sonn, Mirabela Rusu
Domain generalization for prostate segmentation in transrectal ultrasound images: A multi-center study. Medical Image Anal. 82 (2022)
Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt
Meta-Learning Initializations for Interactive Medical Image Registration. CoRR (2022)
Wen Yan, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, Dean C. Barratt, Bernard Chiu, Yipeng Hu
The Impact of Using Voxel-Level Segmentation Metrics on Evaluating Multifocal Prostate Cancer Localisation. AMAI@MICCAI (2022)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Trackerless freehand ultrasound with sequence modelling and auxiliary transformation over past and future frames. CoRR (2022)
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
Image quality assessment for machine learning tasks using meta-reinforcement learning. CoRR (2022)
Shaheer U. Saeed, Wen Yan, Yunguan Fu, Francesco Giganti, Qianye Yang, Zachary M. C. Baum, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Mark Emberton, Dean C. Barratt, Yipeng Hu
Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation. CoRR (2022)
Yiwen Li, Yunguan Fu, Qianye Yang, Zhe Min, Wen Yan, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
Few-shot image segmentation for cross-institution male pelvic organs using registration-assisted prototypical learning. CoRR (2022)
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
Image quality assessment for machine learning tasks using meta-reinforcement learning. Medical Image Anal. 78 (2022)
Zachary M. C. Baum, Tamas Ungi, Christopher Schlenger, Yipeng Hu, Dean C. Barratt
Learning Generalized Non-rigid Multimodal Biomedical Image Registration from Generic Point Set Data. ASMUS@MICCAI (2022)
Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation. ISBI (2021)
Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt
Real-time multimodal image registration with partial intraoperative point-set data. CoRR (2021)
Ester Bonmati, Yipeng Hu, Alexander Grimwood, Gavin J. Johnson, George Goodchild, Margaret G. Keane, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt
Voice-assisted Image Labelling for Endoscopic Ultrasound Classification using Neural Networks. CoRR (2021)
Mark A. Pinnock, Yipeng Hu, Steve Bandula, Dean C. Barratt
Combined 3D super-resolution, de-noising and partial volume correction for percutaneous ablation. Medical Imaging: Image Processing (2021)
Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation. CoRR (2021)
Mark A. Pinnock, Yipeng Hu, Steve Bandula, Dean C. Barratt
End-to-end forecasting of needle trajectory in percutaneous ablation. Medical Imaging: Image-Guided Procedures (2021)
Alexander Grimwood, João Ramalhinho, Zachary M. C. Baum, Nina Montaña Brown, Gavin J. Johnson, Yipeng Hu, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt, Ester Bonmati
Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network. ASMUS@MICCAI (2021)
Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu
Learning image quality assessment by reinforcing task amenable data selection. CoRR (2021)
Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt
Real-time multimodal image registration with partial intraoperative point-set data. Medical Image Anal. 74 (2021)
Zhe Min, Fernando J. Bianco, Qianye Yang, Rachael Rodell, Wen Yan, Dean C. Barratt, Yipeng Hu
Controlling False Positive/Negative Rates for Deep-Learning-Based Prostate Cancer Detection on Multiparametric MR images. CoRR (2021)
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability. ASMUS@MICCAI (2021)
Zhe Min, Fernando J. Bianco, Qianye Yang, Rachael Rodell, Wen Yan, Dean C. Barratt, Yipeng Hu
Controlling False Positive/Negative Rates for Deep-Learning-Based Prostate Cancer Detection on Multiparametric MR Images. MIUA (2021)
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
Adaptable image quality assessment using meta-reinforcement learning of task amenability. CoRR (2021)
Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu
Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection. IPMI (2021)
Zachary M. C. Baum, Ester Bonmati, Lorenzo Cristoni, Andrew Walden, Ferran Prados, Baris Kanber, Dean C. Barratt, David J. Hawkes, Geoff J. M. Parker, Claudia A. M. Gandini Wheeler-Kingshott, Yipeng Hu
Image quality assessment for closed-loop computer-assisted lung ultrasound. Medical Imaging: Image-Guided Procedures (2021)
Qianye Yang, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Qingchao Chen, J. Alison Noble, Tom Vercauteren, Dean C. Barratt, Yipeng Hu
Longitudinal Image Registration with Temporal-Order and Subject-Specificity Discrimination. MICCAI (3) (2020)
Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt
Multimodality Biomedical Image Registration using Free Point Transformer Networks. CoRR (2020)
Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. 5 (55) (2020)
Qianye Yang, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Qingchao Chen, J. Alison Noble, Tom Vercauteren, Dean C. Barratt, Yipeng Hu
Longitudinal Image Registration with Temporal-order and Subject-specificity Discrimination. CoRR (2020)
Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt
Multimodality Biomedical Image Registration Using Free Point Transformer Networks. ASMUS/PIPPI@MICCAI (2020)
Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
DeepReg: a deep learning toolkit for medical image registration. CoRR (2020)
Alex Grimwood, Helen McNair, Yipeng Hu, Ester Bonmati, Dean C. Barratt, Emma J. Harris
Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification. MICCAI (3) (2020)
Alexander Grimwood, Helen McNair, Yipeng Hu, Ester Bonmati, Dean C. Barratt, Emma J. Harris
Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification. CoRR (2020)
Shaheer U. Saeed, Zeike A. Taylor, Mark A. Pinnock, Mark Emberton, Dean C. Barratt, Yipeng Hu
Prostate Motion Modelling Using Biomechanically-Trained Deep Neural Networks on Unstructured Nodes. MICCAI (4) (2020)
Zachary M. C. Baum, Ester Bonmati, Lorenzo Cristoni, Andrew Walden, Ferran Prados, Baris Kanber, Dean C. Barratt, David J. Hawkes, Geoffrey J. M. Parker, Claudia A. M. Gandini Wheeler-Kingshott, Yipeng Hu
Image quality assessment for closed-loop computer-assisted lung ultrasound. CoRR (2020)
Shaheer U. Saeed, Zeike A. Taylor, Mark A. Pinnock, Mark Emberton, Dean C. Barratt, Yipeng Hu
Prostate motion modelling using biomechanically-trained deep neural networks on unstructured nodes. CoRR (2020)
Yipeng Hu, Eli Gibson, Dean C. Barratt, Mark Emberton, J. Alison Noble, Tom Vercauteren
Conditional Segmentation in Lieu of Image Registration. MICCAI (2) (2019)
João Ramalhinho, Henry F. J. Tregidgo, Moustafa Allam, Nikolina Travlou, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson
Registration of Untracked 2D Laparoscopic Ultrasound Liver Images to CT Using Content-Based Retrieval and Kinematic Priors. SUSI/PIPPI@MICCAI (2019)
Nooshin Ghavami, Yipeng Hu, Eli Gibson, Ester Bonmati, Mark Emberton, Caroline M. Moore, Dean C. Barratt
Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration. Medical Image Anal. 58 (2019)
Yipeng Hu, Eli Gibson, Dean C. Barratt, Mark Emberton, J. Alison Noble, Tom Vercauteren
Conditional Segmentation in Lieu of Image Registration. CoRR (2019)
Yipeng Hu, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, Tom Vercauteren, J. Alison Noble, Dean C. Barratt
Adversarial Deformation Regularization for Training Image Registration Neural Networks. CoRR (2018)
Ester Bonmati, Yipeng Hu, Eli Gibson, Laura Uribarri, Geri Keane, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt
Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures. Int. J. Comput. Assist. Radiol. Surg. 13 (6) (2018)
Yipeng Hu, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, Tom Vercauteren, J. Alison Noble, Dean C. Barratt
Adversarial Deformation Regularization for Training Image Registration Neural Networks. MICCAI (1) (2018)
Yipeng Hu, Marc Modat, Eli Gibson, Wenqi Li, Nooshin Ghavami, Ester Bonmati, Guotai Wang, Steven Bandula, Caroline M. Moore, Mark Emberton, Sébastien Ourselin, J. Alison Noble, Dean C. Barratt, Tom Vercauteren
Weakly-supervised convolutional neural networks for multimodal image registration. Medical Image Anal. 49 (2018)
Nooshin Ghavami, Yipeng Hu, Ester Bonmati, Rachael Rodell, Eli Gibson, Caroline M. Moore, Dean C. Barratt
Automatic slice segmentation of intraoperative transrectal ultrasound images using convolutional neural networks. Medical Imaging: Image-Guided Procedures (2018)
Ester Bonmati, Yipeng Hu, Nikhil Sindhwani, Hans Peter Dietz, Jan D'hooge, Dean C. Barratt, Jan Deprest, Tom Vercauteren
Technical note: automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. Medical Imaging: Image-Guided Procedures (2018)
Yipeng Hu, Marc Modat, Eli Gibson, Wenqi Li, Nooshin Ghavami, Ester Bonmati, Guotai Wang, Steven Bandula, Caroline M. Moore, Mark Emberton, Sébastien Ourselin, J. Alison Noble, Dean C. Barratt, Tom Vercauteren
Weakly-Supervised Convolutional Neural Networks for Multimodal Image Registration. CoRR (2018)
João Ramalhinho, Maria R. Robu, Stephen A. Thompson, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson
A pre-operative planning framework for global registration of laparoscopic ultrasound to CT images. Int. J. Comput. Assist. Radiol. Surg. 13 (8) (2018)
Eli Gibson, Francesco Giganti, Yipeng Hu, Ester Bonmati, Steve Bandula, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt
Automatic Multi-Organ Segmentation on Abdominal CT With Dense V-Networks. IEEE Trans. Medical Imaging 37 (8) (2018)
Yipeng Hu, Marc Modat, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, J. Alison Noble, Dean C. Barratt, Tom Vercauteren
Label-driven weakly-supervised learning for multimodal deformarle image registration. ISBI (2018)
Eli Gibson, Yipeng Hu, Nooshin Ghavami, Hashim Uddin Ahmed, Caroline M. Moore, Mark Emberton, Henkjan J. Huisman, Dean C. Barratt
Inter-site Variability in Prostate Segmentation Accuracy Using Deep Learning. MICCAI (4) (2018)
Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert Gray, Tom Doel, Yipeng Hu, Tom Whyntie, Parashkev Nachev, Marc Modat, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren
NiftyNet: a deep-learning platform for medical imaging. Comput. Methods Programs Biomed. 158 (2018)
Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert Gray, Tom Doel, Yipeng Hu, Tom Whyntie, Parashkev Nachev, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren
NiftyNet: a deep-learning platform for medical imaging. CoRR (2017)
Yipeng Hu, Eli Gibson, Tom Vercauteren, Hashim Uddin Ahmed, Mark Emberton, Caroline M. Moore, J. Alison Noble, Dean C. Barratt
Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks. CoRR (2017)
Eli Gibson, Francesco Giganti, Yipeng Hu, Ester Bonmati, Steve Bandula, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt
Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks. MICCAI (1) (2017)
João Ramalhinho, Maria Robu, Stephen A. Thompson, Philip J. Edwards, Crispin Schneider, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson
Breathing motion compensated registration of laparoscopic liver ultrasound to CT. Medical Imaging: Image-Guided Procedures (2017)
Eli Gibson, Maria R. Robu, Stephen A. Thompson, Eddie Edwards, Crispin Schneider, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson
Deep residual networks for automatic segmentation of laparoscopic videos of the liver. Medical Imaging: Image-Guided Procedures (2017)
Ester Bonmati, Yipeng Hu, Nikhil Sindhwani, Hans Peter Dietz, Jan D'hooge, Dean C. Barratt, Jan Deprest, Tom Vercauteren
Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. CoRR (2017)
Yipeng Hu, Eli Gibson, Li-Lin Lee, Weidi Xie, Dean C. Barratt, Tom Vercauteren, J. Alison Noble
Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks. CoRR (2017)
Eli Gibson, Yipeng Hu, Henkjan J. Huisman, Dean C. Barratt
Designing image segmentation studies: Statistical power, sample size and reference standard quality. Medical Image Anal. 42 (2017)
Yipeng Hu, Veeru Kasivisvanathan, Lucy A. M. Simmons, Matthew J. Clarkson, Stephen A. Thompson, Taimur T. Shah, Hashim Uddin Ahmed, Shonit Punwani, David J. Hawkes, Mark Emberton, Caroline M. Moore, Dean C. Barratt
Development and Phantom Validation of a 3-D-Ultrasound-Guided System for Targeting MRI-Visible Lesions During Transrectal Prostate Biopsy. IEEE Trans. Biomed. Eng. 64 (4) (2017)

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Publication Activity (10 Years)

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Dean C. Barratt