Geoffrey A. Sonn

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 36

Top Topics

Histopathology Images

Quality Assessment

Prostate Cancer

Top Venues

Medical Image Anal.

Medical Imaging: Computer-Aided Diagnosis

IEEE Trans. Medical Imaging

Publications

Julia Di, Zdravko Dugonjic, Will Fu, Tingfan Wu, Romeo Mercado, Kevin Sawyer, Victoria Rose Most, Gregg Kammerer, Stefanie Speidel, Richard E. Fan, Geoffrey A. Sonn, Mark R. Cutkosky, Mike Lambeta, Roberto Calandra
Using Fiber Optic Bundles to Miniaturize Vision-Based Tactile Sensors. CoRR (2024)
Wei Shao, Sulaiman Vesal, Simon J. C. Soerensen, Indrani Bhattacharya, Negar Golestani, Rikiya Yamashita, Christian A. Kunder, Richard E. Fan, Pejman Ghanouni, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu
RAPHIA: A deep learning pipeline for the registration of MRI and whole-mount histopathology images of the prostate. Comput. Biol. Medicine 173 (2024)
Sulaiman Vesal, Indrani Bhattacharya, Hassan Jahanandish, Cynthia Xinran Li, Zachary Kornberg, Steve Ran Zhou, Elijah Richard Sommer, Moonhyung Choi, Richard E. Fan, Geoffrey A. Sonn, Mirabela Rusu
ProsDectNet: Bridging the Gap in Prostate Cancer Detection via Transrectal B-mode Ultrasound Imaging. CoRR (2023)
Cynthia Xinran Li, Indrani Bhattacharya, Sulaiman Vesal, Sara L. Saunders, Simon John Christoph Soerensen, Richard E. Fan, Geoffrey A. Sonn, Mirabela Rusu
Improving Automated Prostate Cancer Detection and Classification Accuracy with Multi-scale Cancer Information. MLMI@MICCAI (1) (2023)
Indrani Bhattacharya, Sulaiman Vesal, Hassan Jahanandish, Moonhyung Choi, Steve Zhou, Zachary Kornberg, Elijah Sommer, Richard E. Fan, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu
MIC-CUSP: Multimodal Image Correlations for Ultrasound-Based Prostate Cancer Detection. ASMUS@MICCAI (2023)
Alessa Hering, Lasse Hansen, Tony C. W. Mok, Albert C. S. Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, Sulaiman Vesal, Mirabela Rusu, Geoffrey A. Sonn, Théo Estienne, Maria Vakalopoulou, Luyi Han, Yunzhi Huang, Pew-Thian Yap, Mikael Brudfors, Yaël Balbastre, Samuel Joutard, Marc Modat, Gal Lifshitz, Dan Raviv, Jinxin Lv, Qiang Li, Vincent Jaouen, Dimitris Visvikis, Constance Fourcade, Mathieu Rubeaux, Wentao Pan, Zhe Xu, Bailiang Jian, Francesca De Benetti, Marek Wodzinski, Niklas Gunnarsson, Jens Sjölund, Daniel Grzech, Huaqi Qiu, Zeju Li, Alexander Thorley, Jinming Duan, Christoph Großbröhmer, Andrew Hoopes, Ingerid Reinertsen, Yiming Xiao, Bennett A. Landman, Yuankai Huo, Keelin Murphy, Nikolas Lessmann, Bram van Ginneken, Adrian V. Dalca, Mattias P. Heinrich
Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning. IEEE Trans. Medical Imaging 42 (3) (2023)
Sulaiman Vesal, Iani J. M. B. Gayo, Indrani Bhattacharya, Shyam Natarajan, Leonard S. Marks, Dean C. Barratt, Richard E. Fan, Yipeng Hu, Geoffrey A. Sonn, Mirabela Rusu
Domain Generalization for Prostate Segmentation in Transrectal Ultrasound Images: A Multi-center Study. CoRR (2022)
Ziyi Shen, Qianye Yang, Yuming Shen, Francesco Giganti, Vasilis Stavrinides, Richard E. Fan, Caroline M. Moore, Mirabela Rusu, Geoffrey A. Sonn, Philip H. S. Torr, Dean C. Barratt, Yipeng Hu
Collaborative Quantization Embeddings for Intra-Subject Prostate MR Image Registration. CoRR (2022)
Ziyi Shen, Qianye Yang, Yuming Shen, Francesco Giganti, Vasilis Stavrinides, Richard E. Fan, Caroline M. Moore, Mirabela Rusu, Geoffrey A. Sonn, Philip H. S. Torr, Dean C. Barratt, Yipeng Hu
Collaborative Quantization Embeddings for Intra-subject Prostate MR Image Registration. MICCAI (6) (2022)
Sulaiman Vesal, Iani J. M. B. Gayo, Indrani Bhattacharya, Shyam Natarajan, Leonard S. Marks, Dean C. Barratt, Richard E. Fan, Yipeng Hu, Geoffrey A. Sonn, Mirabela Rusu
Domain generalization for prostate segmentation in transrectal ultrasound images: A multi-center study. Medical Image Anal. 82 (2022)
Karin Stacke, Indrani Bhattacharya, Justin R. Tse, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu
Correlated Feature Aggregation by Region Helps Distinguish Aggressive from Indolent Clear Cell Renal Cell Carcinoma Subtypes on CT. CoRR (2022)
Indrani Bhattacharya, Arun Seetharaman, Christian Kunder, Wei Shao, Leo C. Chen, Simon John Christoph Soerensen, Jeffrey B. Wang, Nikola C. Teslovich, Richard E. Fan, Pejman Ghanouni, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu
Selective identification and localization of indolent and aggressive prostate cancers via CorrSigNIA: an MRI-pathology correlation and deep learning framework. Medical Image Anal. 75 (2022)
Indrani Bhattacharya, Wei Shao, Simon J. C. Soerensen, Richard E. Fan, Jeffrey B. Wang, Christian Kunder, Pejman Ghanouni, Geoffrey A. Sonn, Mirabela Rusu
Integrating zonal priors and pathomic MRI biomarkers for improved aggressive prostate cancer detection on MRI. Medical Imaging: Computer-Aided Diagnosis (2022)
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
Image quality assessment for machine learning tasks using meta-reinforcement learning. CoRR (2022)
Shaheer U. Saeed, Wen Yan, Yunguan Fu, Francesco Giganti, Qianye Yang, Zachary M. C. Baum, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Mark Emberton, Dean C. Barratt, Yipeng Hu
Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation. CoRR (2022)
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
Image quality assessment for machine learning tasks using meta-reinforcement learning. Medical Image Anal. 78 (2022)
Amir Bolous, Arun Seetharaman, Indrani Bhattacharya, Richard E. Fan, Simon John Christoph Soerensen, Leo C. Chen, Pejman Ghanouni, Geoffrey A. Sonn, Mirabela Rusu
Clinically significant prostate cancer detection on MRI with self-supervised learning using image context restoration. Medical Imaging: Computer-Aided Diagnosis (2021)
Rewa Sood, Wei Shao, Christian Kunder, Nikola C. Teslovich, Jeffrey B. Wang, Simon John Christoph Soerensen, Nikhil Madhuripan, Anugayathri Jawahar, James D. Brooks, Pejman Ghanouni, Richard E. Fan, Geoffrey A. Sonn, Mirabela Rusu
3D Registration of pre-surgical prostate MRI and histopathology images via super-resolution volume reconstruction. Medical Image Anal. 69 (2021)
Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu
Learning image quality assessment by reinforcing task amenable data selection. CoRR (2021)
Wei Shao, Linda Banh, Christian A. Kunder, Richard E. Fan, Simon John Christoph Soerensen, Jeffrey B. Wang, Nikola C. Teslovich, Nikhil Madhuripan, Anugayathri Jawahar, Pejman Ghanouni, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu
ProsRegNet: A deep learning framework for registration of MRI and histopathology images of the prostate. Medical Image Anal. 68 (2021)
Thomas DeSilvio, Stefania Moroianu, Indrani Bhattacharya, Arun Seetharaman, Geoffrey A. Sonn, Mirabela Rusu
Intensity normalization of prostate MRIs using conditional generative adversarial networks for cancer detection. Medical Imaging: Computer-Aided Diagnosis (2021)
Alessa Hering, Lasse Hansen, Tony C. W. Mok, Albert C. S. Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, Sulaiman Vesal, Mirabela Rusu, Geoffrey A. Sonn, Théo Estienne, Maria Vakalopoulou, Luyi Han, Yunzhi Huang, Mikael Brudfors, Yaël Balbastre, Samuel Joutard, Marc Modat, Gal Lifshitz, Dan Raviv, Jinxin Lv, Qiang Li, Vincent Jaouen, Dimitris Visvikis, Constance Fourcade, Mathieu Rubeaux, Wentao Pan, Zhe Xu, Bailiang Jian, Francesca De Benetti, Marek Wodzinski, Niklas Gunnarsson, Huaqi Qiu, Zeju Li, Christoph Großbröhmer, Andrew Hoopes, Ingerid Reinertsen, Yiming Xiao, Bennett A. Landman, Yuankai Huo, Keelin Murphy, Bram van Ginneken, Adrian V. Dalca, Mattias P. Heinrich
Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning. CoRR (2021)
Wei Shao, Sulaiman Vesal, David S. Lim, Cynthia Li, Negar Golestani, Ahmed Alsinan, Richard E. Fan, Geoffrey A. Sonn, Mirabela Rusu
The Learn2Reg 2021 MICCAI Grand Challenge (PIMed Team). MIDOG/MOOD/Learn2Reg@MICCAI (2021)
Idan Steinberg, Jeesu Kim, Martin K. Schneider, Dongwoon Hyun, Aimen Zlitni, Sarah M. Hopper, Tal Klap, Geoffrey A. Sonn, Jeremy J. Dahl, Chulhong Kim, Sanjiv Sam Gambhir
Superiorized Photo-Acoustic Non-NEgative Reconstruction (SPANNER) for Clinical Photoacoustic Imaging. IEEE Trans. Medical Imaging 40 (7) (2021)
Indrani Bhattacharya, David S. Lim, Han Lin Aung, Xingchen Liu, Arun Seetharaman, Christian A. Kunder, Wei Shao, Simon John Christoph Soerensen, Richard E. Fan, Pejman Ghanouni, Katherine J. To'o, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu
Bridging the gap between prostate radiology and pathology through machine learning. CoRR (2021)
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability. ASMUS@MICCAI (2021)
Wei Shao, Indrani Bhattacharya, Simon John Christoph Soerensen, Christian A. Kunder, Jeffrey B. Wang, Richard E. Fan, Pejman Ghanouni, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu
Weakly Supervised Registration of Prostate MRI and Histopathology Images. MICCAI (4) (2021)
Simon John Christoph Soerensen, Richard E. Fan, Arun Seetharaman, Leo C. Chen, Wei Shao, Indrani Bhattacharya, Michael Borre, Benjamin Chung, Katherine J. To'o, Geoffrey A. Sonn, Mirabela Rusu
ProGNet: prostate gland segmentation on MRI with deep learning. Medical Imaging: Image Processing (2021)
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
Adaptable image quality assessment using meta-reinforcement learning of task amenability. CoRR (2021)
Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu
Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection. IPMI (2021)
Indrani Bhattacharya, Arun Seetharaman, Wei Shao, Rewa Sood, Christian A. Kunder, Richard E. Fan, Simon John Christoph Soerensen, Jeffrey B. Wang, Pejman Ghanouni, Nikola C. Teslovich, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu
CorrSigNet: Learning CORRelated Prostate Cancer SIGnatures from Radiology and Pathology Images for Improved Computer Aided Diagnosis. MICCAI (2) (2020)
Indrani Bhattacharya, Arun Seetharaman, Wei Shao, Rewa Sood, Christian A. Kunder, Richard E. Fan, Simon John Christoph Soerensen, Jeffrey B. Wang, Pejman Ghanouni, Nikola C. Teslovich, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu
CorrSigNet: Learning CORRelated Prostate Cancer SIGnatures from Radiology and Pathology Images for Improved Computer Aided Diagnosis. CoRR (2020)
Mirabela Rusu, Christian Kunder, Richard E. Fan, Pejman Ghanouni, Robert West, Geoffrey A. Sonn, James D. Brooks
Framework for the co-registration of MRI and histology images in prostate cancer patients with radical prostatectomy. Medical Imaging: Image Processing (2019)
John A. Onofrey, Dana I. Casetti-Dinescu, Andreas D. Lauritzen, Saradwata Sarkar, Rajesh Venkataraman, Richard E. Fan, Geoffrey A. Sonn, Preston C. Sprenkle, Lawrence H. Staib, Xenophon Papademetris
Generalizable Multi-Site Training and Testing Of Deep Neural Networks Using Image Normalization. ISBI (2019)
Okyaz Eminaga, Yuri Tolkach, Christian Kunder, Mahmoud Abbas, Ryan Han, Rosalie Nolley, Axel Semjonow, Martin Boegemann, Sebastian Huss, Andreas M. Loening, Robert West, Geoffrey A. Sonn, Richard E. Fan, Olaf Bettendorf, James D. Brooks, Daniel L. Rubin
Deep Learning for Prostate Pathology. CoRR (2019)
Imon Banerjee, Lewis Hahn, Geoffrey A. Sonn, Richard E. Fan, Daniel L. Rubin
Computerized Multiparametric MR image Analysis for Prostate Cancer Aggressiveness-Assessment. CoRR (2016)