Shaheer U. Saeed

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 37

Top Topics

Medical Image Registration

Weakly Supervised

Prostate Biopsy

Top Venues

Medical Image Anal.

Int. J. Comput. Assist. Radiol. Surg.

Publications

Iani J. M. B. Gayo, Shaheer U. Saeed, Ester Bonmati, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy. Int. J. Comput. Assist. Radiol. Surg. 19 (6) (2024)
Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Dean C. Barratt, Victor A. Prisacariu, Yipeng Hu
Semi-weakly-supervised neural network training for medical image registration. CoRR (2024)
Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
Weakly supervised localisation of prostate cancer using reinforcement learning for bi-parametric MR images. CoRR (2024)
Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
Active learning using adaptable task-based prioritisation. Medical Image Anal. 95 (2024)
Shaheer U. Saeed, Shiqi Huang, João Ramalhinho, Iani J. M. B. Gayo, Nina Montaña Brown, Ester Bonmati, Stephen P. Pereira, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
Competing for pixels: a self-play algorithm for weakly-supervised segmentation. CoRR (2024)
Yaxi Chen, Aleksandra Ivanova, Shaheer U. Saeed, Rikin Hargunani, Jie Huang, Chaozong Liu, Yipeng Hu
Segmentation by registration-enabled SAM prompt engineering using five reference images. CoRR (2024)
Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
Biomechanics-informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity. CoRR (2024)
Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. MLMI@MICCAI (1) (2023)
Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
Non-rigid Medical Image Registration using Physics-informed Neural Networks. CoRR (2023)
Nina Montaña Brown, Shaheer U. Saeed, Ahmed Abdulaal, Thomas Dowrick, Yakup Kilic, Sophie Wilkinson, Jack Gao, Meghavi Mashar, Chloe He, Alkisti Stavropoulou, Emma Thomson, Zachary M. C. Baum, Simone Foti, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson
SARAMIS: Simulation Assets for Robotic Assisted and Minimally Invasive Surgery. NeurIPS (2023)
Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models. CoRR (2023)
Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
Non-rigid Medical Image Registration using Physics-informed Neural Networks. IPMI (2023)
Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew John Clarkson, Dean C. Barratt, Yipeng Hu
Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. MIDL (2023)
Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation. DGM4MICCAI (2023)
Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. CoRR (2023)
Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation. CoRR (2023)
Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. CoRR (2023)
Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. Medical Image Anal. 90 (2023)
Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
Strategising template-guided needle placement for MR-targeted prostate biopsy. CoRR (2022)
Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
Active learning using adaptable task-based prioritisation. CoRR (2022)
Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. CoRR (2022)
Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy. CaPTion@MICCAI (2022)
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
Image quality assessment for machine learning tasks using meta-reinforcement learning. CoRR (2022)
João Ramalhinho, Bongjin Koo, Nina Montaña Brown, Shaheer U. Saeed, Ester Bonmati, Kurinchi Gurusamy, Stephen P. Pereira, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson
Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CT. Int. J. Comput. Assist. Radiol. Surg. 17 (8) (2022)
Shaheer U. Saeed, Wen Yan, Yunguan Fu, Francesco Giganti, Qianye Yang, Zachary M. C. Baum, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Mark Emberton, Dean C. Barratt, Yipeng Hu
Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation. CoRR (2022)
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
Image quality assessment for machine learning tasks using meta-reinforcement learning. Medical Image Anal. 78 (2022)
Liam F. Chalcroft, Jiongqi Qu, Sophie A. Martin, Iani J. M. B. Gayo, Giulio V. Minore, Imraj R. D. Singh, Shaheer U. Saeed, Qianye Yang, Zachary M. C. Baum, André Altmann, Yipeng Hu
Development and evaluation of intraoperative ultrasound segmentation with negative image frames and multiple observer labels. CoRR (2021)
Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu
Learning image quality assessment by reinforcing task amenable data selection. CoRR (2021)
Liam F. Chalcroft, Jiongqi Qu, Sophie A. Martin, Iani J. M. B. Gayo, Giulio V. Minore, Imraj R. D. Singh, Shaheer U. Saeed, Qianye Yang, Zachary M. C. Baum, André Altmann, Yipeng Hu
Development and Evaluation of Intraoperative Ultrasound Segmentation with Negative Image Frames and Multiple Observer Labels. ASMUS@MICCAI (2021)
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability. ASMUS@MICCAI (2021)
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu
Adaptable image quality assessment using meta-reinforcement learning of task amenability. CoRR (2021)
Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu
Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection. IPMI (2021)
Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. 5 (55) (2020)
Nina Montaña Brown, Yunguan Fu, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alex Grimwood, Zhe Min, Ester Bonmati, Tom Vercauteren, Matthew J. Clarkson, Yipeng Hu
Introduction to Medical Image Registration with DeepReg, Between Old and New. CoRR (2020)
Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
DeepReg: a deep learning toolkit for medical image registration. CoRR (2020)
Shaheer U. Saeed, Zeike A. Taylor, Mark A. Pinnock, Mark Emberton, Dean C. Barratt, Yipeng Hu
Prostate Motion Modelling Using Biomechanically-Trained Deep Neural Networks on Unstructured Nodes. MICCAI (4) (2020)
Shaheer U. Saeed, Zeike A. Taylor, Mark A. Pinnock, Mark Emberton, Dean C. Barratt, Yipeng Hu
Prostate motion modelling using biomechanically-trained deep neural networks on unstructured nodes. CoRR (2020)