Matthew J. Clarkson

ORCID

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 111

Top Venues

CoRR

Int. J. Comput. Assist. Radiol. Surg.

Medical Imaging: Image-Guided Procedures

IEEE Trans. Medical Imaging

Publications

Runlong He, Mengya Xu, Adrito Das, Danyal Z. Khan, Sophia Bano, Hani J. Marcus, Danail Stoyanov, Matthew J. Clarkson, Mobarakol Islam
PitVQA: Image-grounded Text Embedding LLM for Visual Question Answering in Pituitary Surgery. CoRR (2024)
Iani J. M. B. Gayo, Shaheer U. Saeed, Ester Bonmati, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy. Int. J. Comput. Assist. Radiol. Surg. 19 (6) (2024)
Yuyang Sheng, Sophia Bano, Matthew J. Clarkson, Mobarakol Islam
Surgical-DeSAM: Decoupling SAM for Instrument Segmentation in Robotic Surgery. CoRR (2024)
Sharib Ali, Yamid Espinel, Yueming Jin, Peng Liu, Bianca Güttner, Xukun Zhang, Lihua Zhang, Thomas Dowrick, Matthew J. Clarkson, Shiting Xiao, Yifan Wu, Yijun Yang, Lei Zhu, Dai Sun, Lan Li, Micha Pfeiffer, Shahid Farid, Lena Maier-Hein, Emmanuel Buc, Adrien Bartoli
An objective comparison of methods for augmented reality in laparoscopic liver resection by preoperative-to-intraoperative image fusion. CoRR (2024)
Zhehua Mao, Adrito Das, Mobarakol Islam, Danyal Z. Khan, Simon C. Williams, John G. Hanrahan, Anouk Borg, Neil L. Dorward, Matthew J. Clarkson, Danail Stoyanov, Hani J. Marcus, Sophia Bano
PitSurgRT: real-time localization of critical anatomical structures in endoscopic pituitary surgery. Int. J. Comput. Assist. Radiol. Surg. 19 (6) (2024)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Long-Term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. IEEE Trans. Biomed. Eng. 71 (3) (2024)
Yuyang Sheng, Sophia Bano, Matthew J. Clarkson, Mobarakol Islam
Surgical-DeSAM: decoupling SAM for instrument segmentation in robotic surgery. Int. J. Comput. Assist. Radiol. Surg. 19 (7) (2024)
Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Dean C. Barratt, Victor A. Prisacariu, Yipeng Hu
Semi-weakly-supervised neural network training for medical image registration. CoRR (2024)
Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
Weakly supervised localisation of prostate cancer using reinforcement learning for bi-parametric MR images. CoRR (2024)
Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
Active learning using adaptable task-based prioritisation. Medical Image Anal. 95 (2024)
Qi Li, Ziyi Shen, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Nonrigid Reconstruction of Freehand Ultrasound without a Tracker. CoRR (2024)
Shaheer U. Saeed, Shiqi Huang, João Ramalhinho, Iani J. M. B. Gayo, Nina Montaña Brown, Ester Bonmati, Stephen P. Pereira, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
Competing for pixels: a self-play algorithm for weakly-supervised segmentation. CoRR (2024)
Soojeong Yoo, João Ramalhinho, Thomas Dowrick, Murali Somasundaram, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Ann Blandford
Can engineers represent surgeons in usability studies? Comparison of results from evaluating augmented reality guidance for laparoscopic surgery. Comput. Graph. 119 (2024)
Manuel Birlo, Razvan Caramalau, Philip J. Edwards, Brian Dromey, Matthew J. Clarkson, Danail Stoyanov
HUP-3D: A 3D multi-view synthetic dataset for assisted-egocentric hand-ultrasound pose estimation. CoRR (2024)
Long Chen, Mobarakol Islam, Matthew J. Clarkson, Thomas Dowrick
Illumination Histogram Consistency Metric for Quantitative Assessment of Video Sequences. CoRR (2024)
Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. MLMI@MICCAI (1) (2023)
Manuel Birlo, Philip Eddie Edwards, Soojeong Yoo, Brian Dromey, Francisco Vasconcelos, Matthew J. Clarkson, Danail Stoyanov
CAL-Tutor: A HoloLens 2 Application for Training in Obstetric Sonography and User Motion Data Recording. J. Imaging 9 (1) (2023)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Long-term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. CoRR (2023)
Nina Montaña Brown, Shaheer U. Saeed, Ahmed Abdulaal, Thomas Dowrick, Yakup Kilic, Sophie Wilkinson, Jack Gao, Meghavi Mashar, Chloe He, Alkisti Stavropoulou, Emma Thomson, Zachary M. C. Baum, Simone Foti, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson
SARAMIS: Simulation Assets for Robotic Assisted and Minimally Invasive Surgery. NeurIPS (2023)
Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models. CoRR (2023)
Christoph Davis, Soojeong Yoo, Matthew J. Clarkson, Stephen A. Thompson
Enhanced Surgeons: Understanding the Design of Augmented Reality Instructions for Keyhole Surgery. VRW (2023)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. CoRR (2023)
Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation. DGM4MICCAI (2023)
Simone Foti, Bongjin Koo, Danail Stoyanov, Matthew J. Clarkson
3D Generative Model Latent Disentanglement via Local Eigenprojection. CoRR (2023)
Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. CoRR (2023)
Simone Foti, Alexander J. Rickart, Bongjin Koo, Eimear O' Sullivan, Lara S. van de Lande, Athanasios Papaioannou, Roman Khonsari, Danail Stoyanov, N. U. Owase Jeelani, Silvia Schievano, David J. Dunaway, Matthew J. Clarkson
Latent Disentanglement in Mesh Variational Autoencoders Improves the Diagnosis of Craniofacial Syndromes and Aids Surgical Planning. CoRR (2023)
Simone Foti, Bongjin Koo, Danail Stoyanov, Matthew J. Clarkson
3D Generative Model Latent Disentanglement via Local Eigenprojection. Comput. Graph. Forum 42 (6) (2023)
Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation. CoRR (2023)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames. ISBI (2023)
Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. CoRR (2023)
Athena Reissis, Soojeong Yoo, Matthew J. Clarkson, Stephen A. Thompson
The effect of luminance on depth perception in augmented reality guided laparoscopic surgery. Medical Imaging: Image-Guided Procedures (2023)
Thomas Dowrick, Long Chen, João Ramalhinho, Juana González-Bueno Puyal, Matthew J. Clarkson
Procedurally Generated Colonoscopy and Laparoscopy Data for Improved Model Training Performance. DEMI@MICCAI (2023)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. ASMUS@MICCAI (2023)
João Ramalhinho, Soojeong Yoo, Thomas Dowrick, Bongjin Koo, Murali Somasundaram, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Ann Blandford, Matthew J. Clarkson
The value of Augmented Reality in surgery - A usability study on laparoscopic liver surgery. Medical Image Anal. 90 (2023)
Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. Medical Image Anal. 90 (2023)
Ana M. Mota, Matthew J. Clarkson, Pedro Almeida, Nuno Matela
Automatic Classification of Simulated Breast Tomosynthesis Whole Images for the Presence of Microcalcification Clusters Using Deep CNNs. J. Imaging 8 (9) (2022)
Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
Strategising template-guided needle placement for MR-targeted prostate biopsy. CoRR (2022)
Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
Active learning using adaptable task-based prioritisation. CoRR (2022)
Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu
Cross-Modality Image Registration Using a Training-Time Privileged Third Modality. IEEE Trans. Medical Imaging 41 (11) (2022)
Ester Bonmati, Yipeng Hu, Alexander Grimwood, Gavin J. Johnson, George Goodchild, Margaret G. Keane, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt
Voice-Assisted Image Labeling for Endoscopic Ultrasound Classification Using Neural Networks. IEEE Trans. Medical Imaging 41 (6) (2022)
Beatrice van Amsterdam, Isabel Funke, Eddie Edwards, Stefanie Speidel, Justin Collins, Ashwin Sridhar, John D. Kelly, Matthew J. Clarkson, Danail Stoyanov
Gesture Recognition in Robotic Surgery With Multimodal Attention. IEEE Trans. Medical Imaging 41 (7) (2022)
Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. CoRR (2022)
Ana M. Mota, Matthew J. Clarkson, Pedro Almeida, Nuno Matela
Detection of Microcalcifications in Digital Breast Tomosynthesis using Faster R-CNN and 3D Volume Rendering. BIOIMAGING (2022)
Nina Montaña Brown, João Ramalhinho, Bongjin Koo, Moustafa Allam, Brian R. Davidson, Kurinchi Gurusamy, Yipeng Hu, Matthew J. Clarkson
Towards Multi-modal Self-supervised Video and Ultrasound Pose Estimation for Laparoscopic Liver Surgery. ASMUS@MICCAI (2022)
Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu
Cross-Modality Image Registration using a Training-Time Privileged Third Modality. CoRR (2022)
Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy. CaPTion@MICCAI (2022)
Bongjin Koo, Maria R. Robu, Moustafa Allam, Micha Pfeiffer, Stephen A. Thompson, Kurinchi Gurusamy, Brian R. Davidson, Stefanie Speidel, David J. Hawkes, Danail Stoyanov, Matthew J. Clarkson
Automatic, global registration in laparoscopic liver surgery. Int. J. Comput. Assist. Radiol. Surg. 17 (1) (2022)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Trackerless freehand ultrasound with sequence modelling and auxiliary transformation over past and future frames. CoRR (2022)
Fernando Pérez-García, Ali Alim-Marvasti, Gloria Romagnoli, Matthew J. Clarkson, Rachel Sparks, John S. Duncan, Sébastien Ourselin
Software tool for visualization of a probabilistic map of the epileptogenic zone from seizure semiologies. Frontiers Neuroinformatics 16 (2022)
João Ramalhinho, Bongjin Koo, Nina Montaña Brown, Shaheer U. Saeed, Ester Bonmati, Kurinchi Gurusamy, Stephen P. Pereira, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson
Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CT. Int. J. Comput. Assist. Radiol. Surg. 17 (8) (2022)
Simone Foti, Bongjin Koo, Danail Stoyanov, Matthew J. Clarkson
3D Shape Variational Autoencoder Latent Disentanglement via Mini-Batch Feature Swapping for Bodies and Faces. CVPR (2022)
Manuel Birlo, P. J. Eddie Edwards, Matthew J. Clarkson, Danail Stoyanov
Utility of Optical See-Through Head Mounted Displays in Augmented Reality-Assisted Surgery: A systematic review. CoRR (2022)
Asta Olafsdottir, David Butt, Addie Majed, Mark Falworth, Matthew J. Clarkson, Stephen A. Thompson
SciKit-SurgeryGlenoid, an open source toolkit for glenoid version measurement. Medical Imaging: Image-Guided Procedures (2022)
Manuel Birlo, P. J. Eddie Edwards, Matthew J. Clarkson, Danail Stoyanov
Utility of optical see-through head mounted displays in augmented reality-assisted surgery: A systematic review. Medical Image Anal. 77 (2022)
Thomas Dowrick, Brian R. Davidson, Kurinchi Gurusamy, Matthew J. Clarkson
Large scale simulation of labeled intraoperative scenes in unity. Int. J. Comput. Assist. Radiol. Surg. 17 (5) (2022)
Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation. ISBI (2021)
Ester Bonmati, Yipeng Hu, Alexander Grimwood, Gavin J. Johnson, George Goodchild, Margaret G. Keane, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt
Voice-assisted Image Labelling for Endoscopic Ultrasound Classification using Neural Networks. CoRR (2021)
João Ramalhinho, Henry F. J. Tregidgo, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Matthew J. Clarkson
Registration of Untracked 2D Laparoscopic Ultrasound to CT Images of the Liver Using Multi-Labelled Content-Based Image Retrieval. IEEE Trans. Medical Imaging 40 (3) (2021)
Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation. CoRR (2021)
Beatrice van Amsterdam, Matthew J. Clarkson, Danail Stoyanov
Gesture Recognition in Robotic Surgery: a Review. CoRR (2021)
Alexander Grimwood, João Ramalhinho, Zachary M. C. Baum, Nina Montaña Brown, Gavin J. Johnson, Yipeng Hu, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt, Ester Bonmati
Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network. ASMUS@MICCAI (2021)
Stephen A. Thompson, Thomas Dowrick, Mian Ahmad, Jeremy Opie, Matthew J. Clarkson
Are fiducial registration error and target registration error correlated? SciKit-SurgeryFRED for teaching and research. Medical Imaging: Image-Guided Procedures (2021)
Simone Foti, Bongjin Koo, Danail Stoyanov, Matthew J. Clarkson
3D Shape Variational Autoencoder Latent Disentanglement via Mini-Batch Feature Swapping for Bodies and Faces. CoRR (2021)
Beatrice van Amsterdam, Matthew J. Clarkson, Danail Stoyanov
Gesture Recognition in Robotic Surgery: A Review. IEEE Trans. Biomed. Eng. 68 (6) (2021)
Ali Alim-Marvasti, Fernando Pérez-García, Karan Dahele, Gloria Romagnoli, Beate Diehl, Rachel Sparks, Sébastien Ourselin, Matthew J. Clarkson, John S. Duncan
Machine Learning for Localizing Epileptogenic-Zone in the Temporal Lobe: Quantifying the Value of Multimodal Clinical-Semiology and Imaging Concordance. Frontiers Digit. Health 3 (2021)
Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren
Zero-Shot Super-Resolution With a Physically-Motivated Downsampling Kernel for Endomicroscopy. IEEE Trans. Medical Imaging 40 (7) (2021)
Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren
Zero-shot super-resolution with a physically-motivated downsampling kernel for endomicroscopy. CoRR (2021)
Nina Montaña Brown, João Ramalhinho, Moustafa Allam, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson
Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver. Int. J. Comput. Assist. Radiol. Surg. 16 (7) (2021)
Jonathan Shapey, Thomas Dowrick, Rémi Delaunay, Eleanor C. Mackle, Stephen A. Thompson, Mirek Janatka, Roland Guichard, Anastasis Georgoulas, David Pérez-Suárez, Robert Bradford, Shakeel R. Saeed, Sébastien Ourselin, Matthew J. Clarkson, Tom Vercauteren
Integrated multi-modality image-guided navigation for neurosurgery: open-source software platform using state-of-the-art clinical hardware. Int. J. Comput. Assist. Radiol. Surg. 16 (8) (2021)
Beatrice van Amsterdam, Matthew J. Clarkson, Danail Stoyanov
Multi-Task Recurrent Neural Network for Surgical Gesture Recognition and Progress Prediction. ICRA (2020)
Ana M. Mota, Matthew J. Clarkson, Pedro Almeida, Nuno Matela
Optimization of Breast Tomosynthesis Visualization through 3D Volume Rendering. J. Imaging 6 (7) (2020)
Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Daniele Ravì, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren
Learning from irregularly sampled data for endomicroscopy super-resolution: a comparative study of sparse and dense approaches. Int. J. Comput. Assist. Radiol. Surg. 15 (7) (2020)
Ana M. Mota, Matthew J. Clarkson, Pedro Almeida, Nuno Matela
An Enhanced Visualization of DBT Imaging Using Blind Deconvolution and Total Variation Minimization Regularization. IEEE Trans. Medical Imaging 39 (12) (2020)
Simone Foti, Bongjin Koo, Thomas Dowrick, João Ramalhinho, Moustafa Allam, Brian R. Davidson, Danail Stoyanov, Matthew J. Clarkson
Intraoperative Liver Surface Completion with Graph Convolutional VAE. CoRR (2020)
Beatrice van Amsterdam, Matthew J. Clarkson, Danail Stoyanov
Multi-Task Recurrent Neural Network for Surgical Gesture Recognition and Progress Prediction. CoRR (2020)
Stephen A. Thompson, Thomas Dowrick, Mian Ahmad, Goufang Xiao, Bongjin Koo, Ester Bonmati, Kim Kahl, Matthew J. Clarkson
SciKit-Surgery: compact libraries for surgical navigation. Int. J. Comput. Assist. Radiol. Surg. 15 (7) (2020)
Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. 5 (55) (2020)
Nina Montaña Brown, Yunguan Fu, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alex Grimwood, Zhe Min, Ester Bonmati, Tom Vercauteren, Matthew J. Clarkson, Yipeng Hu
Introduction to Medical Image Registration with DeepReg, Between Old and New. CoRR (2020)
Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
DeepReg: a deep learning toolkit for medical image registration. CoRR (2020)
Simone Foti, Bongjin Koo, Thomas Dowrick, João Ramalhinho, Moustafa Allam, Brian R. Davidson, Danail Stoyanov, Matthew J. Clarkson
Intraoperative Liver Surface Completion with Graph Convolutional VAE. UNSURE/GRAIL@MICCAI (2020)
Ana M. Mota, Matthew J. Clarkson, Pedro Almeida, Luis Peralta, Nuno Matela
Impact of total variation minimization in volume rendering visualization of breast tomosynthesis data. Comput. Methods Programs Biomed. 195 (2020)
Niels van Berkel, Matthew J. Clarkson, Guofang Xiao, Eren Dursun, Moustafa Allam, Brian R. Davidson, Ann Blandford
Dimensions of ecological validity for usability evaluations in clinical settings. J. Biomed. Informatics 110 (2020)
Micha Pfeiffer, Isabel Funke, Maria R. Robu, Sebastian Bodenstedt, Leon Strenger, Sandy Engelhardt, Tobias Roß, Matthew J. Clarkson, Kurinchi Gurusamy, Brian R. Davidson, Lena Maier-Hein, Carina Riediger, Thilo Welsch, Jürgen Weitz, Stefanie Speidel
Generating large labeled data sets for laparoscopic image processing tasks using unpaired image-to-image translation. CoRR (2019)
Yunguan Fu, Maria R. Robu, Bongjin Koo, Crispin Schneider, Stijn van Laarhoven, Danail Stoyanov, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
More Unlabelled Data or Label More Data? A Study on Semi-supervised Laparoscopic Image Segmentation. DART/MIL3ID@MICCAI (2019)
João Ramalhinho, Henry F. J. Tregidgo, Moustafa Allam, Nikolina Travlou, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson
Registration of Untracked 2D Laparoscopic Ultrasound Liver Images to CT Using Content-Based Retrieval and Kinematic Priors. SUSI/PIPPI@MICCAI (2019)
Micha Pfeiffer, Isabel Funke, Maria R. Robu, Sebastian Bodenstedt, Leon Strenger, Sandy Engelhardt, Tobias Roß, Matthew J. Clarkson, Kurinchi Gurusamy, Brian R. Davidson, Lena Maier-Hein, Carina Riediger, Thilo Welsch, Jürgen Weitz, Stefanie Speidel
Generating Large Labeled Data Sets for Laparoscopic Image Processing Tasks Using Unpaired Image-to-Image Translation. MICCAI (5) (2019)
Yunguan Fu, Maria R. Robu, Bongjin Koo, Crispin Schneider, Stijn van Laarhoven, Danail Stoyanov, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
More unlabelled data or label more data? A study on semi-supervised laparoscopic image segmentation. CoRR (2019)
Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Daniele Ravì, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren
Learning from Irregularly Sampled Data for Endomicroscopy Super-resolution: A Comparative Study of Sparse and Dense Approaches. CoRR (2019)
Timur Kuzhagaliyev, Neil T. Clancy, Mirek Janatka, Kevin Tchaka, Francisco Vasconcelos, Matthew J. Clarkson, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Danail Stoyanov
Augmented reality needle ablation guidance tool for irreversible electroporation in the pancreas. Medical Imaging: Image-Guided Procedures (2018)
Ester Bonmati, Yipeng Hu, Eli Gibson, Laura Uribarri, Geri Keane, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt
Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures. Int. J. Comput. Assist. Radiol. Surg. 13 (6) (2018)
Timur Kuzhagaliyev, Neil T. Clancy, Mirek Janatka, Kevin Tchaka, Francisco Vasconcelos, Matthew J. Clarkson, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Danail Stoyanov
Augmented Reality needle ablation guidance tool for Irreversible Electroporation in the pancreas. CoRR (2018)
João Ramalhinho, Maria R. Robu, Stephen A. Thompson, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson
A pre-operative planning framework for global registration of laparoscopic ultrasound to CT images. Int. J. Comput. Assist. Radiol. Surg. 13 (8) (2018)
Eli Gibson, Francesco Giganti, Yipeng Hu, Ester Bonmati, Steve Bandula, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt
Automatic Multi-Organ Segmentation on Abdominal CT With Dense V-Networks. IEEE Trans. Medical Imaging 37 (8) (2018)
Alejandro Granados, Vejay Vakharia, Roman Rodionov, Martin Schweiger, Sjoerd B. Vos, Aidan G. O'Keeffe, Kuo Li, Chengyuan Wu, Anna Miserocchi, Andrew W. McEvoy, Matthew J. Clarkson, John S. Duncan, Rachel Sparks, Sébastien Ourselin
Automatic segmentation of stereoelectroencephalography (SEEG) electrodes post-implantation considering bending. Int. J. Comput. Assist. Radiol. Surg. 13 (6) (2018)
Maria R. Robu, João Ramalhinho, Stephen A. Thompson, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Danail Stoyanov, Matthew J. Clarkson
Global rigid registration of CT to video in laparoscopic liver surgery. Int. J. Comput. Assist. Radiol. Surg. 13 (6) (2018)
Neil T. Clancy, Kurinchi Gurusamy, Geoffrey Jones, Brian R. Davidson, Matthew J. Clarkson, David J. Hawkes, Danail Stoyanov
Spectral Imaging Of Thermal Damage Induced During Microwave Ablation In The Liver. EMBC (2018)
Stephen A. Thompson, Crispin Schneider, Michele Bosi, Kurinchi Gurusamy, Sébastien Ourselin, Brian R. Davidson, David J. Hawkes, Matthew J. Clarkson
In vivo estimation of target registration errors during augmented reality laparoscopic surgery. Int. J. Comput. Assist. Radiol. Surg. 13 (6) (2018)
Eli Gibson, Francesco Giganti, Yipeng Hu, Ester Bonmati, Steve Bandula, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt
Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks. MICCAI (1) (2017)
Stephen A. Thompson, Yannic Meuer, Eddie Edwards, João Ramalhinho, Maria Ruxandra Robu, Danail Stoyanov, Sébastien Ourselin, Brian R. Davidson, David J. Hawkes, Matthew J. Clarkson
On pattern selection for laparoscope calibration. Medical Imaging: Image-Guided Procedures (2017)
João Ramalhinho, Maria Robu, Stephen A. Thompson, Philip J. Edwards, Crispin Schneider, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson
Breathing motion compensated registration of laparoscopic liver ultrasound to CT. Medical Imaging: Image-Guided Procedures (2017)

Matthew J. Clarkson.css-eqlu8i{font-size:small;padding-left:4px;}

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Matthew J. Clarkson