Jonathan Shapey

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 24

Top Topics

Weakly Supervised

Automatic Segmentation

Top Venues

Int. J. Comput. Assist. Radiol. Surg.

Medical Image Anal.

Publications

Julien Quarez, Matthew Elliot, Oscar MacCormac, Nawal Khan, Marc Modat, Sébastien Ourselin, Jonathan Shapey, Alejandro Granados
R-Trans - A Recurrent Transformer Model for Clinical Feedback in Surgical Skill Assessment. CoRR (2024)
Peichao Li, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren
A self-supervised and adversarial approach to hyperspectral demosaicking and RGB reconstruction in surgical imaging. CoRR (2024)
Dominic LaBella, Katherine Schumacher, Michael Mix, Kevin Leu, Shan McBurney-Lin, Pierre Nedelec, Javier E. Villanueva-Meyer, Jonathan Shapey, Tom Vercauteren, Kazumi Chia, Omar Al-Salihi, Justin Leu, Lia Halasz, Yury Velichko, Chunhao Wang, John Kirkpatrick, Scott Floyd, Zachary J. Reitman, Trey Mullikin, Ulas Bagci, Sean Sachdev, Jona A. Hattangadi-Gluth, Tyler M. Seibert, Nikdokht Farid, Connor Puett, Matthew W. Pease, Kevin Shiue, Syed Muhammad Anwar, Shahriar Faghani, Muhammad Ammar Haider, Pranav I. Warman, Jake Albrecht, András Jakab, Mana Moassefi, Verena Chung, Alejandro Aristizabal, Alexandros Karargyris, Hasan Kassem, Sarthak Pati, Micah J. Sheller, Christina Huang, Aaron Coley, Siddharth Ghanta, Alex Schneider, Conrad Sharp, Rachit Saluja, Florian Kofler, Philipp Lohmann, Philipp Vollmuth, Louis Gagnon, Maruf Adewole, Hongwei Bran Li, Anahita Fathi Kazerooni, Nourel Hoda Tahon, Udunna Anazodo, Ahmed W. Moawad, Bjoern H. Menze, Marius George Linguraru, Mariam Aboian, Benedikt Wiestler, Ujjwal Baid, Gian Marco Conte, Andreas M. Rauschecker, Ayman Nada, Aly H. Abayazeed, Raymond Y. Huang, Maria Correia de Verdier, Jeffrey D. Rudie, Spyridon Bakas, Evan Calabrese
Brain Tumor Segmentation (BraTS) Challenge 2024: Meningioma Radiotherapy Planning Automated Segmentation. CoRR (2024)
Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren
CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation. Medical Image Anal. 83 (2023)
Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque R. Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferndinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, et al.
MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision. CoRR (2023)
Charlie Budd, Jianrong Qiu, Oscar MacCormac, Martin Huber, Christopher E. Mower, Mirek Janatka, Théo Trotouin, Jonathan Shapey, Mads S. Bergholt, Tom Vercauteren
Deep Reinforcement Learning Based System for Intraoperative Hyperspectral Video Autofocusing. CoRR (2023)
Jianghao Wu, Dong Guo, Lu Wang, Shuojue Yang, Yuanjie Zheng, Jonathan Shapey, Tom Vercauteren, Sotirios Bisdas, Robert Bradford, Shakeel R. Saeed, Neil Kitchen, Sébastien Ourselin, Shaoting Zhang, Guotai Wang
TISS-net: Brain tumor image synthesis and segmentation using cascaded dual-task networks and error-prediction consistency. Neurocomputing 544 (2023)
Peichao Li, Muhammad Asad, Conor C. Horgan, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren
Spatial gradient consistency for unsupervised learning of hyperspectral demosaicking: application to surgical imaging. Int. J. Comput. Assist. Radiol. Surg. 18 (6) (2023)
Charlie Budd, Jianrong Qiu, Oscar MacCormac, Martin Huber, Christopher E. Mower, Mirek Janatka, Théo Trotouin, Jonathan Shapey, Mads S. Bergholt, Tom Vercauteren
Deep Reinforcement Learning Based System for Intraoperative Hyperspectral Video Autofocusing. MICCAI (9) (2023)
Peichao Li, Muhammad Asad, Conor C. Horgan, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren
Spatial gradient consistency for unsupervised learning of hyperspectral demosaicking: Application to surgical imaging. CoRR (2023)
Navodini Wijethilake, Steve Connor, Anna Oviedova, Rebecca Burger, Tom Vercauteren, Jonathan Shapey
A Clinical Guideline Driven Automated Linear Feature Extraction for Vestibular Schwannoma. CoRR (2023)
Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren
CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation. CoRR (2022)
Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey
Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. MLCN@MICCAI (2022)
Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey
Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. CoRR (2022)
Peichao Li, Michael Ebner, Philip J. Noonan, Conor C. Horgan, Anisha Bahl, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren
Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 10 (4) (2022)
Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren
Inter Extreme Points Geodesics for Weakly Supervised Segmentation. CoRR (2021)
Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren
Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image Segmentation. MICCAI (2) (2021)
Peichao Li, Michael Ebner, Philip J. Noonan, Conor C. Horgan, Anisha Bahl, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren
Deep Learning Approach for Hyperspectral Image Demosaicking, Spectral Correction and High-resolution RGB Reconstruction. CoRR (2021)
Jonathan Shapey, Thomas Dowrick, Rémi Delaunay, Eleanor C. Mackle, Stephen A. Thompson, Mirek Janatka, Roland Guichard, Anastasis Georgoulas, David Pérez-Suárez, Robert Bradford, Shakeel R. Saeed, Sébastien Ourselin, Matthew J. Clarkson, Tom Vercauteren
Integrated multi-modality image-guided navigation for neurosurgery: open-source software platform using state-of-the-art clinical hardware. Int. J. Comput. Assist. Radiol. Surg. 16 (8) (2021)
Hari McGrath, Peichao Li, Reuben Dorent, Robert Bradford, Shakeel R. Saeed, Sotirios Bisdas, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren
Manual segmentation versus semi-automated segmentation for quantifying vestibular schwannoma volume on MRI. Int. J. Comput. Assist. Radiol. Surg. 15 (9) (2020)
Reuben Dorent, Samuel Joutard, Jonathan Shapey, Sotirios Bisdas, Neil Kitchen, Robert Bradford, Shakeel R. Saeed, Marc Modat, Sébastien Ourselin, Tom Vercauteren
Scribble-based Domain Adaptation via Co-segmentation. CoRR (2020)
Reuben Dorent, Samuel Joutard, Jonathan Shapey, Sotirios Bisdas, Neil Kitchen, Robert Bradford, Shakeel R. Saeed, Marc Modat, Sébastien Ourselin, Tom Vercauteren
Scribble-Based Domain Adaptation via Co-segmentation. MICCAI (1) (2020)
Guotai Wang, Jonathan Shapey, Wenqi Li, Reuben Dorent, Alex Demitriadis, Sotirios Bisdas, Ian Paddick, Robert Bradford, Shaoting Zhang, Sébastien Ourselin, Tom Vercauteren
Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss. MICCAI (2) (2019)
Guotai Wang, Jonathan Shapey, Wenqi Li, Reuben Dorent, Alex Demitriadis, Sotirios Bisdas, Ian Paddick, Robert Bradford, Sébastien Ourselin, Tom Vercauteren
Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss. CoRR (2019)