Andrew Hoopes

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 17

Top Topics

Image Registration

Top Venues

MLCN/RNO-AI@MICCAI

Publications

Malte Hoffmann, Andrew Hoopes, Bruce Fischl, Adrian V. Dalca
Anatomy-specific acquisition-agnostic affine registration learned from fictitious images. Medical Imaging: Image Processing (2023)
Malte Hoffmann, Andrew Hoopes, Douglas N. Greve, Bruce Fischl, Adrian V. Dalca
Anatomy-aware and acquisition-agnostic joint registration with SynthMorph. CoRR (2023)
Alessa Hering, Lasse Hansen, Tony C. W. Mok, Albert C. S. Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, Sulaiman Vesal, Mirabela Rusu, Geoffrey A. Sonn, Théo Estienne, Maria Vakalopoulou, Luyi Han, Yunzhi Huang, Pew-Thian Yap, Mikael Brudfors, Yaël Balbastre, Samuel Joutard, Marc Modat, Gal Lifshitz, Dan Raviv, Jinxin Lv, Qiang Li, Vincent Jaouen, Dimitris Visvikis, Constance Fourcade, Mathieu Rubeaux, Wentao Pan, Zhe Xu, Bailiang Jian, Francesca De Benetti, Marek Wodzinski, Niklas Gunnarsson, Jens Sjölund, Daniel Grzech, Huaqi Qiu, Zeju Li, Alexander Thorley, Jinming Duan, Christoph Großbröhmer, Andrew Hoopes, Ingerid Reinertsen, Yiming Xiao, Bennett A. Landman, Yuankai Huo, Keelin Murphy, Nikolas Lessmann, Bram van Ginneken, Adrian V. Dalca, Mattias P. Heinrich
Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning. IEEE Trans. Medical Imaging 42 (3) (2023)
Andrew Hoopes, Juan Eugenio Iglesias, Bruce Fischl, Douglas N. Greve, Adrian V. Dalca
TopoFit: Rapid Reconstruction of Topologically-Correct Cortical Surfaces. MIDL (2022)
Andrew Hoopes, Jocelyn S. Mora, Adrian V. Dalca, Bruce Fischl, Malte Hoffmann
SynthStrip: skull-stripping for any brain image. NeuroImage 260 (2022)
Stefano Cerri, Douglas N. Greve, Andrew Hoopes, Henrik Lundell, Hartwig R. Siebner, Mark Mühlau, Koen Van Leemput
An Open-Source Tool for Longitudinal Whole-Brain and White Matter Lesion Segmentation. CoRR (2022)
Andrew Hoopes, Jocelyn S. Mora, Adrian V. Dalca, Bruce Fischl, Malte Hoffmann
SynthStrip: Skull-Stripping for Any Brain Image. CoRR (2022)
Andrew Hoopes, Malte Hoffmann, Douglas N. Greve, Bruce Fischl, John V. Guttag, Adrian V. Dalca
Learning the Effect of Registration Hyperparameters with HyperMorph. CoRR (2022)
Andrew Hoopes, Malte Hoffmann, Bruce Fischl, John V. Guttag, Adrian V. Dalca
HyperMorph: Amortized Hyperparameter Learning for Image Registration. CoRR (2021)
Sungmin Hong, Anna K. Bonkhoff, Andrew Hoopes, Martin Bretzner, Markus D. Schirmer, Anne-Katrin Giese, Adrian V. Dalca, Polina Golland, Natalia S. Rost
Hypernet-Ensemble Learning of Segmentation Probability for Medical Image Segmentation with Ambiguous Labels. CoRR (2021)
Douglas N. Greve, Benjamin Billot, Devani Cordero, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Bruce Fischl, Juan Eugenio Iglesias, Jean C. Augustinack
A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images. NeuroImage 244 (2021)
Alessa Hering, Lasse Hansen, Tony C. W. Mok, Albert C. S. Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, Sulaiman Vesal, Mirabela Rusu, Geoffrey A. Sonn, Théo Estienne, Maria Vakalopoulou, Luyi Han, Yunzhi Huang, Mikael Brudfors, Yaël Balbastre, Samuel Joutard, Marc Modat, Gal Lifshitz, Dan Raviv, Jinxin Lv, Qiang Li, Vincent Jaouen, Dimitris Visvikis, Constance Fourcade, Mathieu Rubeaux, Wentao Pan, Zhe Xu, Bailiang Jian, Francesca De Benetti, Marek Wodzinski, Niklas Gunnarsson, Huaqi Qiu, Zeju Li, Christoph Großbröhmer, Andrew Hoopes, Ingerid Reinertsen, Yiming Xiao, Bennett A. Landman, Yuankai Huo, Keelin Murphy, Bram van Ginneken, Adrian V. Dalca, Mattias P. Heinrich
Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning. CoRR (2021)
Andrew Hoopes, Malte Hoffmann, Bruce Fischl, John V. Guttag, Adrian V. Dalca
HyperMorph: Amortized Hyperparameter Learning for Image Registration. IPMI (2021)
Stefano Cerri, Andrew Hoopes, Douglas N. Greve, Mark Mühlau, Koen Van Leemput
A Longitudinal Method for Simultaneous Whole-Brain and Lesion Segmentation in Multiple Sclerosis. MLCN/RNO-AI@MICCAI (2020)
Stefano Cerri, Andrew Hoopes, Douglas N. Greve, Mark Mühlau, Koen Van Leemput
A Longitudinal Method for Simultaneous Whole-Brain and Lesion Segmentation in Multiple Sclerosis. CoRR (2020)
Amod Jog, Andrew Hoopes, Douglas N. Greve, Koen Van Leemput, Bruce Fischl
PSACNN: Pulse sequence adaptive fast whole brain segmentation. NeuroImage 199 (2019)
Amod Jog, Andrew Hoopes, Douglas N. Greve, Koen Van Leemput, Bruce Fischl
PSACNN: Pulse Sequence Adaptive Fast Whole Brain Segmentation. CoRR (2019)