Suprosanna Shit

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 85

Top Topics

Intracranial Aneurysms

Top Venues

Medical Image Anal.

BrainLes@MICCAI (2)

Publications

Hailong He, Johannes C. Paetzold, Nils Börner, Erik Riedel, Stefan Gerl, Simon Schneider, Chiara Fisher, Ivan Ezhov, Suprosanna Shit, Hongwei Li, Daniel Rückert, Juan Aguirre, Tilo Biedermann, Ulf Darsow, Bjoern H. Menze, Vasilis Ntziachristos
Machine Learning Analysis of Human Skin by Optoacoustic Mesoscopy for Automated Extraction of Psoriasis and Aging Biomarkers. IEEE Trans. Medical Imaging 43 (6) (2024)
Hongwei Bran Li, Fernando Navarro, Ivan Ezhov, Amirhossein Bayat, Dhritiman Das, Florian Kofler, Suprosanna Shit, Diana Waldmannstetter, Johannes C. Paetzold, Xiaobin Hu, Benedikt Wiestler, Lucas Zimmer, Tamaz Amiranashvili, Chinmay Prabhakar, Christoph Berger, Jonas Weidner, Michelle Alonso-Basanta, Arif Rashid, Ujjwal Baid, Wesam Adel, Deniz Alis, Bhakti Baheti, Yingbin Bai, Ishaan Bhat, Sabri Can Cetindag, Wenting Chen, Li Cheng, Prasad Dutande, Lara Dular, Mustafa A. Elattar, Ming Feng, Shengbo Gao, Henkjan Huisman, Weifeng Hu, Shubham Innani, Wei Jiat, Davood Karimi, Hugo J. Kuijf, Jin Tae Kwak, Hoang Long Le, Xiang Lia, Huiyan Lin, Tongliang Liu, Jun Ma, Kai Ma, Ting Ma, Ilkay Öksüz, Robbie Holland, Arlindo L. Oliveira, Jimut Bahan Pal, Xuan Pei, Maoying Qiao, Anindo Saha, Raghavendra Selvan, Linlin Shen, João Lourenço Silva, Ziga Spiclin, Sanjay N. Talbar, Dadong Wang, Wei Wang, Xiong Wang, Yin Wang, Ruiling Xia, Kele Xu, Yanwu Yan, Mert Yergin, Shuang Yu, Lingxi Zeng, YingLin Zhang, Jiachen Zhao, Yefeng Zheng, Martin Zukovec, Richard K. G. Do, Anton S. Becker, Amber L. Simpson, Ender Konukoglu, András Jakab, Spyridon Bakas, Leo Joskowicz, Bjoern H. Menze
QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge. CoRR (2024)
Alexander H. Berger, Laurin Lux, Suprosanna Shit, Ivan Ezhov, Georgios Kaissis, Martin J. Menten, Daniel Rueckert, Johannes C. Paetzold
Cross-domain and Cross-dimension Learning for Image-to-Graph Transformers. CoRR (2024)
Poulami Sinhamahapatra, Suprosanna Shit, Anjany Sekuboyina, Malek El Husseini, David Schinz, Nicolas Lenhart, Bjoern H. Menze, Jan Kirschke, Karsten Roscher, Stephan Günnemann
Enhancing Interpretability of Vertebrae Fracture Grading using Human-interpretable Prototypes. CoRR (2024)
Chinmay Prabhakar, Suprosanna Shit, Fabio Musio, Kaiyuan Yang, Tamaz Amiranashvili, Johannes C. Paetzold, Hongwei Bran Li, Bjoern H. Menze
3D Vessel Graph Generation Using Denoising Diffusion. CoRR (2024)
Yundi Zhang, Chen Chen, Suprosanna Shit, Sophie Starck, Daniel Rueckert, Jiazhen Pan
Whole Heart 3D+T Representation Learning Through Sparse 2D Cardiac MR Images. CoRR (2024)
Ezequiel de la Rosa, Mauricio Reyes, Sook-Lei Liew, Alexandre Hutton, Roland Wiest, Johannes Kaesmacher, Uta Hanning, Arsany Hakim, Richard Zubal, Waldo Valenzuela, David Robben, Diana Maria Sima, Vincenzo Anania, Arne Brys, James A. Meakin, Anne Mickan, Gabriel Broocks, Christian Heitkamp, Shengbo Gao, Kongming Liang, Ziji Zhang, Md Mahfuzur Rahman Siddiquee, Andriy Myronenko, Pooya Ashtari, Sabine Van Huffel, Hyun-su Jeong, Chiho Yoon, Chulhong Kim, Jiayu Huo, Sébastien Ourselin, Rachel Sparks, Albert Clèrigues, Arnau Oliver, Xavier Lladó, Liam F. Chalcroft, Ioannis Pappas, Jeroen Bertels, Ewout Heylen, Juliette Moreau, Nima Hatami, Carole Frindel, Abdul Qayyum, Moona Mazher, Domenec Puig, Shao-Chieh Lin, Chun-Jung Juan, Tianxi Hu, Lyndon Boone, Maged Goubran, Yi-Jui Liu, Susanne Wegener, Florian Kofler, Ivan Ezhov, Suprosanna Shit, Moritz Roman Hernandez Petzsche, Bjoern H. Menze, Jan S. Kirschke, Benedikt Wiestler
A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge. CoRR (2024)
Alexander H. Berger, Nico Stucki, Laurin Lux, Vincent Bürgin, Suprosanna Shit, Anna Banaszak, Daniel Rueckert, Ulrich Bauer, Johannes C. Paetzold
Topologically faithful multi-class segmentation in medical images. CoRR (2024)
Kaiyuan Yang, Fabio Musio, Yihui Ma, Norman Juchler, Johannes C. Paetzold, Rami Al-Maskari, Luciano Höher, Hongwei Bran Li, Ibrahim Ethem Hamamci, Anjany Sekuboyina, Suprosanna Shit, Houjing Huang, Diana Waldmannstetter, Florian Kofler, Fernando Navarro, Martin J. Menten, Ivan Ezhov, Daniel Rueckert, Iris N. Vos, Ynte M. Ruigrok, Birgitta K. Velthuis, Hugo J. Kuijf, Julien Hämmerli, Catherine Wurster, Philippe Bijlenga, Laura Westphal, Jeroen Bisschop, Elisa Colombo, Hakim Baazaoui, Andrew Makmur, James Hallinan, Benedikt Wiestler, Jan S. Kirschke, Roland Wiest, Emmanuel Montagnon, Laurent Létourneau-Guillon, Adrian Galdran, Francesco Galati, Daniele Falcetta, Maria A. Zuluaga, Chaolong Lin, Haoran Zhao, Zehan Zhang, Sinyoung Ra, Jongyun Hwang, Hyunjin Park, Junqiang Chen, Marek Wodzinski, Henning Müller, et al.
Benchmarking the CoW with the TopCoW Challenge: Topology-Aware Anatomical Segmentation of the Circle of Willis for CTA and MRA. CoRR (2023)
Julian McGinnis, Suprosanna Shit, Hongwei Bran Li, Vasiliki Sideri-Lampretsa, Robert Graf, Maik Dannecker, Jiazhen Pan, Nil Stolt Ansó, Mark Mühlau, Jan S. Kirschke, Daniel Rueckert, Benedikt Wiestler
Single-subject Multi-contrast MRI Super-resolution via Implicit Neural Representations. MICCAI (8) (2023)
Nico Stucki, Johannes C. Paetzold, Suprosanna Shit, Bjoern H. Menze, Ulrich Bauer
Topologically Faithful Image Segmentation via Induced Matching of Persistence Barcodes. ICML (2023)
Chinmay Prabhakar, Hongwei Li, Jiancheng Yang, Suprosanna Shit, Benedikt Wiestler, Bjoern H. Menze
ViT-AE++: Improving Vision Transformer Autoencoder for Self-supervised Medical Image Representations. MIDL (2023)
Anjany Sekuboyina, Jannik Irmai, Suprosanna Shit, Jan Kirschke, Bjoern Andres, Bjoern H. Menze
Pushing the Limits of an FCN and A CRF Towards Near-Ideal Vertebrae Labelling. ISBI (2023)
Tanveer Hannan, Rajat Koner, Maximilian Bernhard, Suprosanna Shit, Bjoern H. Menze, Volker Tresp, Matthias Schubert, Thomas Seidl
GRAtt-VIS: Gated Residual Attention for Auto Rectifying Video Instance Segmentation. CoRR (2023)
Martin J. Menten, Johannes C. Paetzold, Veronika A. Zimmer, Suprosanna Shit, Ivan Ezhov, Robbie Holland, Monika Probst, Julia A. Schnabel, Daniel Rueckert
A skeletonization algorithm for gradient-based optimization. ICCV (2023)
Özgün Turgut, Philip Müller, Paul Hager, Suprosanna Shit, Sophie Starck, Martin J. Menten, Eimo Martens, Daniel Rueckert
Unlocking the Diagnostic Potential of ECG through Knowledge Transfer from Cardiac MRI. CoRR (2023)
Rajat Koner, Tanveer Hannan, Suprosanna Shit, Sahand Sharifzadeh, Matthias Schubert, Thomas Seidl, Volker Tresp
InstanceFormer: An Online Video Instance Segmentation Framework. AAAI (2023)
Florian Kofler, Hendrik Kristian Möller, Josef A. Buchner, Ezequiel de la Rosa, Ivan Ezhov, Marcel Rosier, Isra Mekki, Suprosanna Shit, Moritz Negwer, Rami Al-Maskari, Ali Ertürk, Shankeeth Vinayahalingam, Fabian Isensee, Sarthak Pati, Daniel Rueckert, Jan S. Kirschke, Stefan K. Ehrlich, Annika Reinke, Bjoern H. Menze, Benedikt Wiestler, Marie Piraud
Panoptica - instance-wise evaluation of 3D semantic and instance segmentation maps. CoRR (2023)
Jiazhen Pan, Suprosanna Shit, Özgün Turgut, Wenqi Huang, Hongwei Bran Li, Nil Stolt Ansó, Thomas Küstner, Kerstin Hammernik, Daniel Rueckert
Global k-Space Interpolation for Dynamic MRI Reconstruction Using Masked Image Modeling. MICCAI (10) (2023)
Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Bran Li, Harsharan Bhatia, Timo Loehr, Marie Piraud, Ali Ertürk, Jan Kirschke, Jan C. Peeken, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
blob loss: Instance Imbalance Aware Loss Functions for Semantic Segmentation. IPMI (2023)
Chinmay Prabhakar, Suprosanna Shit, Johannes C. Paetzold, Ivan Ezhov, Rajat Koner, Hongwei Li, Florian Sebastian Kofler, Bjoern H. Menze
Vesselformer: Towards Complete 3D Vessel Graph Generation from Images. MIDL (2023)
Chinmay Prabhakar, Hongwei Bran Li, Jiancheng Yang, Suprosanna Shit, Benedikt Wiestler, Bjoern H. Menze
ViT-AE++: Improving Vision Transformer Autoencoder for Self-supervised Medical Image Representations. CoRR (2023)
Leon Mächler, Ivan Ezhov, Suprosanna Shit, Johannes C. Paetzold
FedPIDAvg: A PID controller inspired aggregation method for Federated Learning. CoRR (2023)
Martin J. Menten, Johannes C. Paetzold, Veronika A. Zimmer, Suprosanna Shit, Ivan Ezhov, Robbie Holland, Monika Probst, Julia A. Schnabel, Daniel Rueckert
A skeletonization algorithm for gradient-based optimization. CoRR (2023)
Ivan Ezhov, Kevin Scibilia, Katharina Franitza, Felix Steinbauer, Suprosanna Shit, Lucas Zimmer, Jana Lipková, Florian Kofler, Johannes C. Paetzold, Luca Canalini, Diana Waldmannstetter, Martin J. Menten, Marie Metz, Benedikt Wiestler, Bjoern H. Menze
Learn-Morph-Infer: A new way of solving the inverse problem for brain tumor modeling. Medical Image Anal. 83 (2023)
Julian McGinnis, Suprosanna Shit, Hongwei Bran Li, Vasiliki Sideri-Lampretsa, Robert Graf, Maik Dannecker, Jiazhen Pan, Nil Stolt Ansó, Mark Mühlau, Jan S. Kirschke, Daniel Rueckert, Benedikt Wiestler
Multi-contrast MRI Super-resolution via Implicit Neural Representations. CoRR (2023)
Patrick Bilic, Patrick Ferdinand Christ, Hongwei Li, Eugene Vorontsov, Avi Ben-Cohen, Georgios Kaissis, Adi Szeskin, Colin Jacobs, Gabriel Efrain Humpire Mamani, Gabriel Chartrand, Fabian Lohöfer, Julian Walter Holch, Wieland H. Sommer, Felix Hofmann, Alexandre Hostettler, Naama Lev-Cohain, Michal Drozdzal, Michal Marianne Amitai, Refael Vivanti, Jacob Sosna, Ivan Ezhov, Anjany Sekuboyina, Fernando Navarro, Florian Kofler, Johannes C. Paetzold, Suprosanna Shit, Xiaobin Hu, Jana Lipková, Markus Rempfler, Marie Piraud, Jan Kirschke, Benedikt Wiestler, Zhiheng Zhang, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Michela Antonelli, Woong Bae, Miriam Bellver, Lei Bi, Hao Chen, Grzegorz Chlebus, Erik B. Dam, Qi Dou, Chi-Wing Fu, Bogdan Georgescu, Xavier Giró-i-Nieto, Felix Grün, Xu Han, Pheng-Ann Heng, Jürgen Hesser, Jan Hendrik Moltz, Christian Igel, Fabian Isensee, Paul Jäger, Fucang Jia, Krishna Chaitanya Kaluva, Mahendra Khened, Ildoo Kim, Jae-Hun Kim, Sungwoong Kim, Simon Kohl, Tomasz K. Konopczynski, Avinash Kori, Ganapathy Krishnamurthi, Fan Li, Hongchao Li, Junbo Li, Xiaomeng Li, John S. Lowengrub, Jun Ma, Klaus H. Maier-Hein, Kevis-Kokitsi Maninis, Hans Meine, Dorit Merhof, Akshay Pai, Mathias Perslev, Jens Petersen, Jordi Pont-Tuset, Jin Qi, Xiaojuan Qi, Oliver Rippel, Karsten Roth, Ignacio Sarasua, Andrea Schenk, Zengming Shen, Jordi Torres, Christian Wachinger, Chunliang Wang, Leon Weninger, Jianrong Wu, Daguang Xu, Xiaoping Yang, Simon Chun-Ho Yu, Yading Yuan, Miao Yue, Liping Zhang, Manuel Jorge Cardoso, Spyridon Bakas, Rickmer Braren, Volker Heinemann, Christopher Pal, An Tang, Samuel Kadoury, Luc Soler, Bram van Ginneken, Hayit Greenspan, Leo Joskowicz, Bjoern H. Menze
The Liver Tumor Segmentation Benchmark (LiTS). Medical Image Anal. 84 (2023)
Jiazhen Pan, Suprosanna Shit, Özgün Turgut, Wenqi Huang, Hongwei Bran Li, Nil Stolt Ansó, Thomas Küstner, Kerstin Hammernik, Daniel Rueckert
Global k-Space Interpolation for Dynamic MRI Reconstruction using Masked Image Modeling. CoRR (2023)
Izabela Horvath, Johannes C. Paetzold, Oliver Schoppe, Rami Al-Maskari, Ivan Ezhov, Suprosanna Shit, Hongwei Li, Ali Ertürk, Bjoern H. Menze
METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy. WACV (2022)
Rajat Koner, Tanveer Hannan, Suprosanna Shit, Sahand Sharifzadeh, Matthias Schubert, Thomas Seidl, Volker Tresp
InstanceFormer: An Online Video Instance Segmentation Framework. CoRR (2022)
Chinmay Prabhakar, Anjany Sekuboyina, Hongwei Bran Li, Johannes C. Paetzold, Suprosanna Shit, Tamaz Amiranashvili, Jens Kleesiek, Bjoern H. Menze
Structured Knowledge Graphs for Classifying Unseen Patterns in Radiographs. GeoMedIA (2022)
Nico Stucki, Johannes C. Paetzold, Suprosanna Shit, Bjoern H. Menze, Ulrich Bauer
Topologically faithful image segmentation via induced matching of persistence barcodes. CoRR (2022)
Fernando Navarro, Guido Sasahara, Suprosanna Shit, Ivan Ezhov, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze
A unified 3D framework for Organs at Risk Localization and Segmentation for Radiation Therapy Planning. CoRR (2022)
Suprosanna Shit, Rajat Koner, Bastian Wittmann, Johannes C. Paetzold, Ivan Ezhov, Hongwei Li, Jiazhen Pan, Sahand Sharifzadeh, Georgios Kaissis, Volker Tresp, Bjoern H. Menze
Relationformer: A Unified Framework for Image-to-Graph Generation. ECCV (37) (2022)
Suprosanna Shit, Judith Zimmermann, Ivan Ezhov, Johannes C. Paetzold, Augusto Fava-Sanches, Carolin M. Pirkl, Bjoern H. Menze
SRflow: Deep learning based super-resolution of 4D-flow MRI data. Frontiers Artif. Intell. 5 (2022)
Matthias Ivantsits, Leonid Goubergrits, Jan-Martin Kuhnigk, Markus Hüllebrand, Jan Brüning, Tabea Kossen, Boris Pfahringer, Jens Schaller, Andreas Spuler, Titus Kühne, Yizhuan Jia, Xuesong Li, Suprosanna Shit, Bjoern H. Menze, Ziyu Su, Jun Ma, Ziwei Nie, Kartik Jain, Yanfei Liu, Yi Lin, Anja Hennemuth
Detection and analysis of cerebral aneurysms based on X-ray rotational angiography - the CADA 2020 challenge. Medical Image Anal. 77 (2022)
Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. CoRR (2022)
Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. BrainLes@MICCAI (2022)
Suprosanna Shit, Rajat Koner, Bastian Wittmann, Johannes C. Paetzold, Ivan Ezhov, Hongwei Li, Jiazhen Pan, Sahand Sharifzadeh, Georgios Kaissis, Volker Tresp, Bjoern H. Menze
Relationformer: A Unified Framework for Image-to-Graph Generation. CoRR (2022)
Leon Mächler, Ivan Ezhov, Suprosanna Shit, Johannes C. Paetzold
FedPIDAvg: A PID Controller Inspired Aggregation Method for Federated Learning. BrainLes@MICCAI (2) (2022)
Bastian Wittmann, Fernando Navarro, Suprosanna Shit, Bjoern H. Menze
Focused Decoding Enables 3D Anatomical Detection by Transformers. CoRR (2022)
Fernando Navarro, Guido Sasahara, Suprosanna Shit, Anjany Sekuboyina, Ivan Ezhov, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze
A Unified 3D Framework for Organs-at-Risk Localization and Segmentation for Radiation Therapy Planning. EMBC (2022)
Ivan Ezhov, Marcel Rosier, Lucas Zimmer, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Kevin Scibilia, Leon Mächler, Katharina Franitza, Tamaz Amiranashvili, Marie Metz, Sailesh Conjeti, Benedikt Wiestler, Bjoern H. Menze
Casting the inverse problem as a database query. The case of personalized tumor growth modeling. CoRR (2022)
Fernando Navarro, Christopher Watanabe, Suprosanna Shit, Anjany Sekuboyina, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze
Self-Supervised Pretext Tasks in Model Robustness & Generalizability: A Revisit from Medical Imaging Perspective. EMBC (2022)
Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Li, Harsharan Bhatia, Timo Loehr, Marie Piraud, Ali Ertürk, Jan Kirschke, Jan Peeken, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
blob loss: instance imbalance aware loss functions for semantic segmentation. CoRR (2022)
Hongwei Bran Li, Chinmay Prabhakar, Suprosanna Shit, Johannes C. Paetzold, Tamaz Amiranashvili, Jianguo Zhang, Daniel Rueckert, Juan Eugenio Iglesias, Benedikt Wiestler, Bjoern H. Menze
A Domain-specific Perceptual Metric via Contrastive Self-supervised Representation: Applications on Natural and Medical Images. CoRR (2022)
Ivan Ezhov, Marcel Rosier, Lucas Zimmer, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Kevin Scibilia, Felix Steinbauer, Leon Maechler, Katharina Franitza, Tamaz Amiranashvili, Martin J. Menten, Marie Metz, Sailesh Conjeti, Benedikt Wiestler, Bjoern H. Menze
A for-loop is all you need. For solving the inverse problem in the case of personalized tumor growth modeling. ML4H@NeurIPS (2022)
Ivan Ezhov, Tudor Mot, Suprosanna Shit, Jana Lipková, Johannes C. Paetzold, Florian Kofler, Chantal Pellegrini, Marcel Kollovieh, Fernando Navarro, Hongwei Li, Marie Metz, Benedikt Wiestler, Bjoern H. Menze
Geometry-Aware Neural Solver for Fast Bayesian Calibration of Brain Tumor Models. IEEE Trans. Medical Imaging 41 (5) (2022)
Suprosanna Shit, Johannes C. Paetzold, Anjany Sekuboyina, Ivan Ezhov, Alexander Unger, Andrey Zhylka, Josien P. W. Pluim, Ulrich Bauer, Bjoern H. Menze
clDice - A Novel Topology-Preserving Loss Function for Tubular Structure Segmentation. CVPR (2021)
Kimberley M. Timmins, Irene C. van der Schaaf, Edwin Bennink, Ynte M. Ruigrok, Xingle An, Michael Baumgartner, Pascal Bourdon, Riccardo de Feo, Tommaso Di Noto, Florian Dubost, Augusto Fava-Sanches, Xue Feng, Corentin Giroud, Inteneural Group, Minghui Hu, Paul F. Jaeger, Juhana Kaiponen, Michal Klimont, Yuexiang Li, Hongwei Li, Yi Lin, Timo Loehr, Jun Ma, Klaus H. Maier-Hein, Guillaume Marie, Bjoern H. Menze, Jonas Richiardi, Saifeddine Rjiba, Dhaval Shah, Suprosanna Shit, Jussi Tohka, Thierry Urruty, Urszula Walinska, Xiaoping Yang, Yunqiao Yang, Yin Yin, Birgitta K. Velthuis, Hugo J. Kuijf
Comparing methods of detecting and segmenting unruptured intracranial aneurysms on TOF-MRAS: The ADAM challenge. NeuroImage 238 (2021)
Johannes C. Paetzold, Julian McGinnis, Suprosanna Shit, Ivan Ezhov, Paul Büschl, Chinmay Prabhakar, Anjany Sekuboyina, Mihail I. Todorov, Georgios Kaissis, Ali Ertürk, Stephan Günnemann, Bjoern H. Menze
Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience. NeurIPS Datasets and Benchmarks (2021)
Florian Kofler, Ivan Ezhov, Fabian Isensee, Fabian Balsiger, Christoph Berger, Maximilian Koerner, Johannes C. Paetzold, Hongwei Li, Suprosanna Shit, Richard McKinley, Spyridon Bakas, Claus Zimmer, Donna P. Ankerst, Jan Kirschke, Benedikt Wiestler, Bjoern H. Menze
Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient. CoRR (2021)
Ivan Ezhov, Kevin Scibilia, Katharina Franitza, Felix Steinbauer, Suprosanna Shit, Lucas Zimmer, Jana Lipková, Florian Kofler, Johannes C. Paetzold, Luca Canalini, Diana Waldmannstetter, Martin Menten, Marie Metz, Benedikt Wiestler, Bjoern H. Menze
Learn-Morph-Infer: a new way of solving the inverse problem for brain tumor modeling. CoRR (2021)
Leon Mächler, Ivan Ezhov, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Timo Loehr, Benedikt Wiestler, Bjoern H. Menze
FedCostWAvg: A new averaging for better Federated Learning. CoRR (2021)
Lucas Fidon, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Sébastien Ourselin, Tom Vercauteren
Generalized Wasserstein Dice Loss, Test-Time Augmentation, and Transformers for the BraTS 2021 Challenge. BrainLes@MICCAI (2) (2021)
Fabian Balsiger, Alain Jungo, Naren Akash R. J, Jianan Chen, Ivan Ezhov, Shengnan Liu, Jun Ma, Johannes C. Paetzold, Vishva Saravanan R, Anjany Sekuboyina, Suprosanna Shit, Yannick Suter, Moshood Yekini, Guodong Zeng, Markus Rempfler
The MICCAI Hackathon on reproducibility, diversity, and selection of papers at the MICCAI conference. CoRR (2021)
Izabela Horvath, Johannes C. Paetzold, Oliver Schoppe, Rami Al-Maskari, Ivan Ezhov, Suprosanna Shit, Hongwei Li, Ali Ertuerk, Bjoern H. Menze
METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy. CoRR (2021)
Fernando Navarro, Christopher Watanabe, Suprosanna Shit, Anjany Sekuboyina, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze
Evaluating the Robustness of Self-Supervised Learning in Medical Imaging. CoRR (2021)
Suprosanna Shit, Ivan Ezhov, Leon Mächler, Abinav R., Jana Lipková, Johannes C. Paetzold, Florian Kofler, Marie Piraud, Bjoern H. Menze
Semi-Implicit Neural Solver for Time-dependent Partial Differential Equations. CoRR (2021)
Suprosanna Shit, Dhritiman Das, Ivan Ezhov, Johannes C. Paetzold, Augusto F. Sanches, Nils Thuerey, Bjoern H. Menze
Velocity-To-Pressure (V2P) - Net: Inferring Relative Pressures from Time-Varying 3D Fluid Flow Velocities. IPMI (2021)
Anjany Sekuboyina, Malek El Husseini, Amirhossein Bayat, Maximilian Löffler, Hans Liebl, Hongwei Li, Giles Tetteh, Jan Kukacka, Christian Payer, Darko Stern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Kevin Brown, Alexandre Kirszenberg, Élodie Puybareau, Di Chen, Yiwei Bai, Brandon H. Rapazzo, Timyoas Yeah, Amber Zhang, Shangliang Xu, Feng Hou, Zhiqiang He, Chan Zeng, Zheng Xiangshang, Xu Liming, Tucker J. Netherton, Raymond P. Mumme, Laurence E. Court, Zixun Huang, Chenhang He, Li-Wen Wang, Sai Ho Ling, Lê Duy Huynh, Nicolas Boutry, Roman Jakubícek, Jirí Chmelík, Supriti Mulay, Mohanasankar Sivaprakasam, Johannes C. Paetzold, Suprosanna Shit, Ivan Ezhov, Benedikt Wiestler, Ben Glocker, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke
VerSe: A Vertebrae labelling and segmentation benchmark for multi-detector CT images. Medical Image Anal. 73 (2021)
Johannes C. Paetzold, Julian McGinnis, Suprosanna Shit, Ivan Ezhov, Paul Büschl, Chinmay Prabhakar, Mihail I. Todorov, Anjany Sekuboyina, Georgios Kaissis, Ali Ertürk, Stephan Günnemann, Bjoern H. Menze
Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience (VesselGraph). CoRR (2021)
Leon Mächler, Ivan Ezhov, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Timo Loehr, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
FedCostWAvg: A New Averaging for Better Federated Learning. BrainLes@MICCAI (2) (2021)
Lucas Fidon, Michael Aertsen, Suprosanna Shit, Philippe Demaerel, Sébastien Ourselin, Jan Deprest, Tom Vercauteren
Partial supervision for the FeTA challenge 2021. CoRR (2021)
Lucas Fidon, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Sébastien Ourselin, Tom Vercauteren
Generalized Wasserstein Dice Loss, Test-time Augmentation, and Transformers for the BraTS 2021 challenge. CoRR (2021)
Jianning Li, Pedro Pimentel, Angelika Szengel, Moritz Ehlke, Hans Lamecker, Stefan Zachow, Laura Jovani Estacio Cerquin, Christian Doenitz, Heiko Ramm, Haochen Shi, Xiaojun Chen, Franco Matzkin, Virginia F. J. Newcombe, Enzo Ferrante, Yuan Jin, David G. Ellis, Michele R. Aizenberg, Oldrich Kodym, Michal Spanel, Adam Herout, James G. Mainprize, Zachary Fishman, Michael R. Hardisty, Amirhossein Bayat, Suprosanna Shit, Bomin Wang, Zhi Liu, Matthias Eder, Antonio Pepe, Christina Gsaxner, Victor Alves, Ulrike Zefferer, Gord von Campe, Karin Pistracher, Ute Schäfer, Dieter Schmalstieg, Bjoern H. Menze, Ben Glocker, Jan Egger
AutoImplant 2020-First MICCAI Challenge on Automatic Cranial Implant Design. IEEE Trans. Medical Imaging 40 (9) (2021)
Kelly Payette, Priscille de Dumast, Hamza Kebiri, Ivan Ezhov, Johannes C. Paetzold, Suprosanna Shit, Asim Iqbal, Romesa Khan, Raimund Kottke, Patrice Grehten, Hui Ji, Levente Lanczi, Marianna Nagy, Monika Beresova, Thi Dao Nguyen, Giancarlo Natalucci, Theofanis Karayannis, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab
A comparison of automatic multi-tissue segmentation methods of the human fetal brain using the FeTA Dataset. CoRR (2020)
Hongwei Li, Aurore Menegaux, Felix J. B. Bäuerlein, Suprosanna Shit, Benita Schmitz-Koep, Christian Sorg, Bjoern H. Menze, Dennis M. Hedderich
Complex Grey Matter Structure Segmentation in Brains via Deep Learning: Example of the Claustrum. CoRR (2020)
Stefan Gerl, Johannes C. Paetzold, Hailong He, Ivan Ezhov, Suprosanna Shit, Florian Kofler, Amirhossein Bayat, Giles Tetteh, Vasilis Ntziachristos, Bjoern H. Menze
A Distance-Based Loss for Smooth and Continuous Skin Layer Segmentation in Optoacoustic Images. MICCAI (6) (2020)
Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Bjoern H. Menze
Aν-Net: Automatic Detection and Segmentation of Aneurysm. CADA@MICCAI (2020)
Ahmad B. Qasim, Ivan Ezhov, Suprosanna Shit, Oliver Schoppe, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jana Lipková, Hongwei Li, Bjoern H. Menze
Red-GAN: Attacking class imbalance via conditioned generation. Yet another medical imaging perspective. MIDL (2020)
Stefan Gerl, Johannes C. Paetzold, Hailong He, Ivan Ezhov, Suprosanna Shit, Florian Kofler, Amirhossein Bayat, Giles Tetteh, Vasilis Ntziachristos, Bjoern H. Menze
A distance-based loss for smooth and continuous skin layer segmentation in optoacoustic images. CoRR (2020)
Ahmad B. Qasim, Ivan Ezhov, Suprosanna Shit, Oliver Schoppe, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jana Lipková, Hongwei Li, Bjoern H. Menze
Red-GAN: Attacking class imbalance via conditioned generation. Yet another medical imaging perspective. CoRR (2020)
Ivan Ezhov, Tudor Mot, Suprosanna Shit, Jana Lipková, Johannes C. Paetzold, Florian Kofler, Fernando Navarro, Marie Metz, Benedikt Wiestler, Björn H. Menze
Real-time Bayesian personalization via a learnable brain tumor growth model. CoRR (2020)
Amirhossein Bayat, Suprosanna Shit, Adrian Kilian, Jürgen T. Liechtenstein, Jan S. Kirschke, Bjoern H. Menze
Cranial Implant Prediction using Low-Resolution 3D Shape Completion and High-Resolution 2D Refinement. CoRR (2020)
Suprosanna Shit, Johannes C. Paetzold, Anjany Sekuboyina, Andrey Zhylka, Ivan Ezhov, Alexander Unger, Josien P. W. Pluim, Giles Tetteh, Bjoern H. Menze
clDice - a Topology-Preserving Loss Function for Tubular Structure Segmentation. CoRR (2020)
Amirhossein Bayat, Suprosanna Shit, Adrian Kilian, Jürgen T. Liechtenstein, Jan S. Kirschke, Bjoern H. Menze
Cranial Implant Prediction Using Low-Resolution 3D Shape Completion and High-Resolution 2D Refinement. AutoImplant@MICCAI (2020)
Fernando Navarro, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Andrei Gafita, Jan Peeken, Stephanie Combs, Bjoern H. Menze
Shape-Aware Complementary-Task Learning for Multi-Organ Segmentation. CoRR (2019)
Florian Kofler, Johannes C. Paetzold, Ivan Ezhov, Suprosanna Shit, Daniel Krahulec, Jan S. Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
A Baseline for Predicting Glioblastoma Patient Survival Time with Classical Statistical Models and Primitive Features Ignoring Image Information. BrainLes@MICCAI (1) (2019)
Ivan Ezhov, Jana Lipková, Suprosanna Shit, Florian Kofler, Nora Collomb, Benjamin Lemasson, Emmanuel Luc Barbier, Bjoern H. Menze
Neural parameters estimation for brain tumor growth modeling. CoRR (2019)
Fernando Navarro, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Andrei Gafita, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze
Shape-Aware Complementary-Task Learning for Multi-organ Segmentation. MLMI@MICCAI (2019)
Ivan Ezhov, Jana Lipková, Suprosanna Shit, Florian Kofler, Nora Collomb, Benjamin Lemasson, Emmanuel Luc Barbier, Bjoern H. Menze
Neural Parameters Estimation for Brain Tumor Growth Modeling. MICCAI (2) (2019)
Suprosanna Shit, Abinav Ravi Venkatakrishnan, Ivan Ezhov, Jana Lipková, Marie Piraud, Bjoern H. Menze
Implicit Neural Solver for Time-dependent Linear PDEs with Convergence Guarantee. CoRR (2019)
Subhadip Mukherjee, Suprosanna Shit, Chandra Sekhar Seelamantula
Phasesplit: A Variable Splitting Framework for Phase Retrieval. ICASSP (2018)
Aritra Bhowmik, Suprosanna Shit, Chandra Sekhar Seelamantula
Training-Free, Single-Image Super-Resolution Using a Dynamic Convolutional Network. IEEE Signal Process. Lett. 25 (1) (2018)
Soumyadip Ghosh, Suprosanna Shit
A low cost data acquisition system from digital display instruments employing image processing technique. ICACCI (2014)