John S. Lowengrub

Publication Activity (10 Years)

Years Active: 1993-2024
Publications (10 Years): 39

Top Topics

Finite Difference

Mathematical Models

Top Venues

J. Comput. Phys.

PLoS Comput. Biol.

IEEE Trans. Biomed. Eng.

Publications

Ray Zirui Zhang, Xiaohui Xie, John S. Lowengrub
BiLO: Bilevel Local Operator Learning for PDE inverse problems. CoRR (2024)
Ray Zirui Zhang, Ivan Ezhov, Michal Balcerak, Andy Zhu, Benedikt Wiestler, Bjoern H. Menze, John S. Lowengrub
Personalized Predictions of Glioblastoma Infiltration: Mathematical Models, Physics-Informed Neural Networks and Multimodal Scans. CoRR (2023)
Amlan K. Barua, Ray Chew, Shuwang Li, John S. Lowengrub, Andreas Münch, Barbara Wagner
Sharp-interface problem of the Ohta-Kawasaki model for symmetric diblock copolymers. J. Comput. Phys. 481 (2023)
Patrick Bilic, Patrick Ferdinand Christ, Hongwei Li, Eugene Vorontsov, Avi Ben-Cohen, Georgios Kaissis, Adi Szeskin, Colin Jacobs, Gabriel Efrain Humpire Mamani, Gabriel Chartrand, Fabian Lohöfer, Julian Walter Holch, Wieland H. Sommer, Felix Hofmann, Alexandre Hostettler, Naama Lev-Cohain, Michal Drozdzal, Michal Marianne Amitai, Refael Vivanti, Jacob Sosna, Ivan Ezhov, Anjany Sekuboyina, Fernando Navarro, Florian Kofler, Johannes C. Paetzold, Suprosanna Shit, Xiaobin Hu, Jana Lipková, Markus Rempfler, Marie Piraud, Jan Kirschke, Benedikt Wiestler, Zhiheng Zhang, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Michela Antonelli, Woong Bae, Miriam Bellver, Lei Bi, Hao Chen, Grzegorz Chlebus, Erik B. Dam, Qi Dou, Chi-Wing Fu, Bogdan Georgescu, Xavier Giró-i-Nieto, Felix Grün, Xu Han, Pheng-Ann Heng, Jürgen Hesser, Jan Hendrik Moltz, Christian Igel, Fabian Isensee, Paul Jäger, Fucang Jia, Krishna Chaitanya Kaluva, Mahendra Khened, Ildoo Kim, Jae-Hun Kim, Sungwoong Kim, Simon Kohl, Tomasz K. Konopczynski, Avinash Kori, Ganapathy Krishnamurthi, Fan Li, Hongchao Li, Junbo Li, Xiaomeng Li, John S. Lowengrub, Jun Ma, Klaus H. Maier-Hein, Kevis-Kokitsi Maninis, Hans Meine, Dorit Merhof, Akshay Pai, Mathias Perslev, Jens Petersen, Jordi Pont-Tuset, Jin Qi, Xiaojuan Qi, Oliver Rippel, Karsten Roth, Ignacio Sarasua, Andrea Schenk, Zengming Shen, Jordi Torres, Christian Wachinger, Chunliang Wang, Leon Weninger, Jianrong Wu, Daguang Xu, Xiaoping Yang, Simon Chun-Ho Yu, Yading Yuan, Miao Yue, Liping Zhang, Manuel Jorge Cardoso, Spyridon Bakas, Rickmer Braren, Volker Heinemann, Christopher Pal, An Tang, Samuel Kadoury, Luc Soler, Bram van Ginneken, Hayit Greenspan, Leo Joskowicz, Bjoern H. Menze
The Liver Tumor Segmentation Benchmark (LiTS). Medical Image Anal. 84 (2023)
Michal Balcerak, Ivan Ezhov, Petr Karnakov, Sergey Litvinov, Petros Koumoutsakos, Jonas Weidner, Ray Zirui Zhang, John S. Lowengrub, Benedikt Wiestler, Bjoern H. Menze
Individualizing Glioma Radiotherapy Planning by Optimization of a Data and Physics Informed Discrete Loss. CoRR (2023)
Meng Zhao, Pedro Anjos, John S. Lowengrub, Wenjun Ying, Shuwang Li
Numerical study on viscous fingering using electric fields in a Hele-Shaw cell. CoRR (2022)
Joseph D. Butner, Prashant Dogra, Caroline Chung, Renata Pasqualini, Wadih Arap, John S. Lowengrub, Vittorio Cristini, Zhihui Wang
Mathematical modeling of cancer immunotherapy for personalized clinical translation. Nat. Comput. Sci. 2 (12) (2022)
Peter Uhl, John S. Lowengrub, Natalia L. Komarova, Dominik Wodarz
Spatial dynamics of feedback and feedforward regulation in cell lineages. PLoS Comput. Biol. 18 (5) (2022)
Zhenlin Guo, Qing Cheng, Ping Lin, Chun Liu, John S. Lowengrub
Second order approximation for a quasi-incompressible Navier-Stokes Cahn-Hilliard system of two-phase flows with variable density. J. Comput. Phys. 448 (2022)
Min-Jhe Lu, Wenrui Hao, Chun Liu, John S. Lowengrub, Shuwang Li
Nonlinear simulation of vascular tumor growth with chemotaxis and the control of necrosis. J. Comput. Phys. 459 (2022)
Xiaoxia Tang, Shuwang Li, John S. Lowengrub, Steven M. Wise
Phase field modeling and computation of vesicle growth or shrinkage. CoRR (2022)
Huaming Yan, Daniel Ramirez-Guerrero, John S. Lowengrub, Min Wu
Correction: Stress generation, relaxation and size control in confined tumor growth. PLoS Comput. Biol. 18 (6) (2022)
Joseph D. Butner, David Fuentes, Bulent Ozpolat, George A. Calin, Xiaobo Zhou, John S. Lowengrub, Vittorio Cristini, Zhihui Wang
Corrections to "A multiscale Agent-Based Model of Ductal Carcinoma in Situ". IEEE Trans. Biomed. Eng. 68 (2) (2021)
Huaming Yan, Daniel Ramirez-Guerrero, John S. Lowengrub, Min Wu
Stress generation, relaxation and size control in confined tumor growth. PLoS Comput. Biol. 17 (12) (2021)
Min-Jhe Lu, Wenrui Hao, Chun Liu, John S. Lowengrub, Shuwang Li
Nonlinear simulation of vascular tumor growth with chemotaxis and the control of necrosis. CoRR (2021)
Amlan K. Barua, Ray Chew, Shuwang Li, John S. Lowengrub, Andreas Münch, Barbara Wagner
Sharp-interface problem of the Ohta-Kawasaki model for symmetric diblock copolymers. CoRR (2021)
Joseph D. Butner, David Fuentes, Bulent Ozpolat, George A. Calin, Xiaobo Zhou, John S. Lowengrub, Vittorio Cristini, Zhihui Wang
A Multiscale Agent-Based Model of Ductal Carcinoma In Situ. IEEE Trans. Biomed. Eng. 67 (5) (2020)
Fei Yu, Zhenlin Guo, John S. Lowengrub
Higher-order accurate diffuse-domain methods for partial differential equations with Dirichlet boundary conditions in complex, evolving geometries. J. Comput. Phys. 406 (2020)
Mariano Franco-de-Leon, John S. Lowengrub
Boundary integral methods for dispersive equations, Airy flow and the modified Korteweg de Vries equation. Adv. Comput. Math. 45 (1) (2019)
Jana Lipková, Panagiotis Angelikopoulos, Stephen Wu, Esther Alberts, Benedikt Wiestler, Christian Diehl, Christine Preibisch, Thomas Pyka, Stephanie Combs, Panagiotis E. Hadjidoukas, Koen Van Leemput, Petros Koumoutsakos, John S. Lowengrub, Bjoern H. Menze
Personalized Radiotherapy Design for Glioblastoma: Integrating Mathematical Tumor Models, Multimodal Scans, and Bayesian Inference. IEEE Trans. Medical Imaging 38 (8) (2019)
Min-Jhe Lu, Chun Liu, John S. Lowengrub, Shuwang Li
Complex far-field geometries determine the stability of solid tumor growth with chemotaxis. CoRR (2019)
Kai Liu, John S. Lowengrub, Jun Allard
Efficient simulation of thermally fluctuating biopolymers immersed in fluids on 1-micron, 1-second scales. J. Comput. Phys. 386 (2019)
Kai Liu, Brian Chu, Jay M. Newby, Elizabeth L. Read, John S. Lowengrub, Jun Allard
Hydrodynamics of transient cell-cell contact: The role of membrane permeability and active protrusion length. PLoS Comput. Biol. 15 (4) (2019)
Patrick Bilic, Patrick Ferdinand Christ, Eugene Vorontsov, Grzegorz Chlebus, Hao Chen, Qi Dou, Chi-Wing Fu, Xiao Han, Pheng-Ann Heng, Jürgen Hesser, Samuel Kadoury, Tomasz K. Konopczynski, Miao Le, Chunming Li, Xiaomeng Li, Jana Lipková, John S. Lowengrub, Hans Meine, Jan Hendrik Moltz, Chris Pal, Marie Piraud, Xiaojuan Qi, Jin Qi, Markus Rempfler, Karsten Roth, Andrea Schenk, Anjany Sekuboyina, Ping Zhou, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Felix Grün, Georgios Kaissis, Fabian Lohöfer, Rickmer Braren, Julian Holch, Felix Hofmann, Wieland H. Sommer, Volker Heinemann, Colin Jacobs, Gabriel Efrain Humpire Mamani, Bram van Ginneken, Gabriel Chartrand, An Tang, Michal Drozdzal, Avi Ben-Cohen, Eyal Klang, Michal Marianne Amitai, Eli Konen, Hayit Greenspan, Johan Moreau, Alexandre Hostettler, Luc Soler, Refael Vivanti, Adi Szeskin, Naama Lev-Cohain, Jacob Sosna, Leo Joskowicz, Bjoern H. Menze
The Liver Tumor Segmentation Benchmark (LiTS). CoRR (2019)
Emma Turian, Kai Liu, John S. Lowengrub, Shuwang Li
Morphological stability of an elastic tumor-host interface. J. Comput. Appl. Math. 362 (2019)
Meng Zhao, Xiaofan Li, Wenjun Ying, Andrew Belmonte, John S. Lowengrub, Shuwang Li
Computation of a Shrinking Interface in a Hele-Shaw Cell. SIAM J. Sci. Comput. 40 (4) (2018)
Wenqiang Feng, Zhenlin Guo, John S. Lowengrub, Steven M. Wise
A mass-conservative adaptive FAS multigrid solver for cell-centered finite difference methods on block-structured, locally-cartesian grids. J. Comput. Phys. 352 (2018)
Ying Chen, John S. Lowengrub, Jie Shen, Cheng Wang, Steven M. Wise
Efficient energy stable schemes for isotropic and strongly anisotropic Cahn-Hilliard systems with the Willmore regularization. J. Comput. Phys. 365 (2018)
Wenqiang Feng, Zhen Guan, John S. Lowengrub, Cheng Wang, Steven M. Wise, Ying Chen
A Uniquely Solvable, Energy Stable Numerical Scheme for the Functionalized Cahn-Hilliard Equation and Its Convergence Analysis. J. Sci. Comput. 76 (3) (2018)
Jana Lipková, Panagiotis Angelikopoulos, Stephen Wu, Esther Alberts, Benedikt Wiestler, Christian Diehl, Christine Preibisch, Thomas Pyka, Stephanie Combs, Panagiotis E. Hadjidoukas, Koen Van Leemput, Petros Koumoutsakos, John S. Lowengrub, Bjoern H. Menze
Personalized Radiotherapy Planning for Glioma Using Multimodal Bayesian Model Calibration. CoRR (2018)
Huaming Yan, Monica Romero-Lopez, Hermann B. Frieboes, Christopher C. W. Hughes, John S. Lowengrub
Multiscale Modeling of Glioblastoma Suggests that the Partial Disruption of Vessel/Cancer Stem Cell Crosstalk Can Promote Tumor Regression Without Increasing Invasiveness. IEEE Trans. Biomed. Eng. 64 (3) (2017)
Jana Lipková, Markus Rempfler, Patrick Ferdinand Christ, John S. Lowengrub, Bjoern H. Menze
Automated Unsupervised Segmentation of Liver Lesions in CT scans via Cahn-Hilliard Phase Separation. CoRR (2017)
Xiaoming Zheng, John S. Lowengrub
An interface-fitted adaptive mesh method for elliptic problems and its application in free interface problems with surface tension. Adv. Comput. Math. 42 (5) (2016)
Meng Zhao, Andrew Belmonte, Shuwang Li, Xiaofan Li, John S. Lowengrub
Nonlinear simulations of elastic fingering in a Hele-Shaw cell. J. Comput. Appl. Math. 307 (2016)
Yucheng Hu, John S. Lowengrub
Collective Properties of a Transcription Initiation Model Under Varying Environment. J. Comput. Biol. 23 (1) (2016)
Zhen Guan, Vili Heinonen, John S. Lowengrub, Cheng Wang, Steven M. Wise
An energy stable, hexagonal finite difference scheme for the 2D phase field crystal amplitude equations. J. Comput. Phys. 321 (2016)
John S. Lowengrub, Jun Allard, Sebastian Aland
Numerical simulation of endocytosis: Viscous flow driven by membranes with non-uniformly distributed curvature-inducing molecules. J. Comput. Phys. 309 (2016)
Sameeran Kunche, Huaming Yan, Anne L. Calof, John S. Lowengrub, Arthur D. Lander
Feedback, Lineages and Self-Organizing Morphogenesis. PLoS Comput. Biol. 12 (3) (2016)
Edward Meeds, Michael Chiang, Mary Lee, Olivier Cinquin, John S. Lowengrub, Max Welling
POPE: post optimization posterior evaluation of likelihood free models. BMC Bioinform. 16 (2015)
Sebastian Aland, Sabine Egerer, John S. Lowengrub, Axel Voigt
Diffuse interface models of locally inextensible vesicles in a viscous fluid. J. Comput. Phys. 277 (2014)
Zhenlin Guo, Ping Lin, John S. Lowengrub
A numerical method for the quasi-incompressible Cahn-Hilliard-Navier-Stokes equations for variable density flows with a discrete energy law. J. Comput. Phys. 276 (2014)
Zhen Guan, John S. Lowengrub, Cheng Wang, Steven M. Wise
Second order convex splitting schemes for periodic nonlocal Cahn-Hilliard and Allen-Cahn equations. J. Comput. Phys. 277 (2014)
Arvind Baskaran, John S. Lowengrub, C. Wang, Steven M. Wise
Convergence Analysis of a Second Order Convex Splitting Scheme for the Modified Phase Field Crystal Equation. SIAM J. Numer. Anal. 51 (5) (2013)
Arvind Baskaran, Zhengzheng Hu, John S. Lowengrub, Cheng Wang, Steven M. Wise, Peng Zhou
Energy stable and efficient finite-difference nonlinear multigrid schemes for the modified phase field crystal equation. J. Comput. Phys. 250 (2013)
Xiangxin Zhu, Max Welling, Fang Jin, John S. Lowengrub
Predicting simulation parameters of biological systems using a Gaussian process model. Stat. Anal. Data Min. 5 (6) (2012)
Andong He, John S. Lowengrub, Andrew Belmonte
Modeling an Elastic Fingering Instability in a Reactive Hele-Shaw Flow. SIAM J. Appl. Math. 72 (3) (2012)
Jian-Jun Xu, Yin Yang, John S. Lowengrub
A level-set continuum method for two-phase flows with insoluble surfactant. J. Comput. Phys. 231 (17) (2012)
Steven M. Wise, John S. Lowengrub, Vittorio Cristini
An adaptive multigrid algorithm for simulating solid tumor growth using mixture models. Math. Comput. Model. 53 (1-2) (2011)
Shingyu Leung, John S. Lowengrub, Hongkai Zhao
A grid based particle method for solving partial differential equations on evolving surfaces and modeling high order geometrical motion. J. Comput. Phys. 230 (7) (2011)
Knut Erik Teigen, Peng Song, John S. Lowengrub, Axel Voigt
A diffuse-interface method for two-phase flows with soluble surfactants. J. Comput. Phys. 230 (2) (2011)
Jin Sun Sohn, Yu-Hau Tseng, Shuwang Li, Axel Voigt, John S. Lowengrub
Dynamics of multicomponent vesicles in a viscous fluid. J. Comput. Phys. 229 (1) (2010)
Steven M. Wise, Cheng Wang, John S. Lowengrub
An Energy-Stable and Convergent Finite-Difference Scheme for the Phase Field Crystal Equation. SIAM J. Numer. Anal. 47 (3) (2009)
Zhengzheng Hu, Steven M. Wise, Cheng Wang, John S. Lowengrub
Stable and efficient finite-difference nonlinear-multigrid schemes for the phase field crystal equation. J. Comput. Phys. 228 (15) (2009)
Paul Macklin, John S. Lowengrub
A New Ghost Cell/Level Set Method for Moving Boundary Problems: Application to Tumor Growth. J. Sci. Comput. 35 (2-3) (2008)
Shuwang Li, John S. Lowengrub, Perry H. Leo
A rescaling scheme with application to the long-time simulation of viscous fingering in a Hele-Shaw cell. J. Comput. Phys. 225 (1) (2007)
Steven M. Wise, Junseok Kim, John S. Lowengrub
Solving the regularized, strongly anisotropic Cahn-Hilliard equation by an adaptive nonlinear multigrid method. J. Comput. Phys. 226 (1) (2007)
Paul Macklin, John S. Lowengrub
An improved geometry-aware curvature discretization for level set methods: Application to tumor growth. J. Comput. Phys. 215 (2) (2006)
Xiaofeng Yang, Ashley J. James, John S. Lowengrub, Xiaoming Zheng, Vittorio Cristini
An adaptive coupled level-set/volume-of-fluid interface capturing method for unstructured triangular grids. J. Comput. Phys. 217 (2) (2006)
Jian-Jun Xu, Zhilin Li, John S. Lowengrub, Hongkai Zhao
A level-set method for interfacial flows with surfactant. J. Comput. Phys. 212 (2) (2006)
Russel E. Caflisch, Thomas Y. Hou, John S. Lowengrub
Almost optimal convergence of the point vortex method for vortex sheets using numerical filtering. Math. Comput. 68 (228) (1999)
John S. Lowengrub, Michael J. Shelley, Barry Merriman
High-Order and Efficient Methods for the Vorticity Formulation of the Euler Equations. SIAM J. Sci. Comput. 14 (5) (1993)
Thomas Y. Hou, John S. Lowengrub, Michael J. Shelley
The Convergence of an Exact Desingularization for Vortex Methods. SIAM J. Sci. Comput. 14 (1) (1993)