Johannes C. Paetzold

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 78

Top Topics

Image Segmentation

Vessel Segmentation

Medical Imaging

Top Venues

Medical Image Anal.

BrainLes@MICCAI (2)

IEEE Trans. Medical Imaging

Publications

Hailong He, Johannes C. Paetzold, Nils Börner, Erik Riedel, Stefan Gerl, Simon Schneider, Chiara Fisher, Ivan Ezhov, Suprosanna Shit, Hongwei Li, Daniel Rückert, Juan Aguirre, Tilo Biedermann, Ulf Darsow, Bjoern H. Menze, Vasilis Ntziachristos
Machine Learning Analysis of Human Skin by Optoacoustic Mesoscopy for Automated Extraction of Psoriasis and Aging Biomarkers. IEEE Trans. Medical Imaging 43 (6) (2024)
Bastian Wittmann, Johannes C. Paetzold, Chinmay Prabhakar, Daniel Rueckert, Bjoern H. Menze
Link Prediction for Flow-Driven Spatial Networks. WACV (2024)
Hongwei Bran Li, Fernando Navarro, Ivan Ezhov, Amirhossein Bayat, Dhritiman Das, Florian Kofler, Suprosanna Shit, Diana Waldmannstetter, Johannes C. Paetzold, Xiaobin Hu, Benedikt Wiestler, Lucas Zimmer, Tamaz Amiranashvili, Chinmay Prabhakar, Christoph Berger, Jonas Weidner, Michelle Alonso-Basanta, Arif Rashid, Ujjwal Baid, Wesam Adel, Deniz Alis, Bhakti Baheti, Yingbin Bai, Ishaan Bhat, Sabri Can Cetindag, Wenting Chen, Li Cheng, Prasad Dutande, Lara Dular, Mustafa A. Elattar, Ming Feng, Shengbo Gao, Henkjan Huisman, Weifeng Hu, Shubham Innani, Wei Jiat, Davood Karimi, Hugo J. Kuijf, Jin Tae Kwak, Hoang Long Le, Xiang Lia, Huiyan Lin, Tongliang Liu, Jun Ma, Kai Ma, Ting Ma, Ilkay Öksüz, Robbie Holland, Arlindo L. Oliveira, Jimut Bahan Pal, Xuan Pei, Maoying Qiao, Anindo Saha, Raghavendra Selvan, Linlin Shen, João Lourenço Silva, Ziga Spiclin, Sanjay N. Talbar, Dadong Wang, Wei Wang, Xiong Wang, Yin Wang, Ruiling Xia, Kele Xu, Yanwu Yan, Mert Yergin, Shuang Yu, Lingxi Zeng, YingLin Zhang, Jiachen Zhao, Yefeng Zheng, Martin Zukovec, Richard K. G. Do, Anton S. Becker, Amber L. Simpson, Ender Konukoglu, András Jakab, Spyridon Bakas, Leo Joskowicz, Bjoern H. Menze
QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge. CoRR (2024)
Alexander H. Berger, Laurin Lux, Suprosanna Shit, Ivan Ezhov, Georgios Kaissis, Martin J. Menten, Daniel Rueckert, Johannes C. Paetzold
Cross-domain and Cross-dimension Learning for Image-to-Graph Transformers. CoRR (2024)
Nico Stucki, Vincent Bürgin, Johannes C. Paetzold, Ulrich Bauer
Efficient Betti Matching Enables Topology-Aware 3D Segmentation via Persistent Homology. CoRR (2024)
Bastian Wittmann, Lukas Glandorf, Johannes C. Paetzold, Tamaz Amiranashvili, Thomas Wälchli, Daniel Razansky, Bjoern H. Menze
Simulation-Based Segmentation of Blood Vessels in Cerebral 3D OCTA Images. CoRR (2024)
Chinmay Prabhakar, Suprosanna Shit, Fabio Musio, Kaiyuan Yang, Tamaz Amiranashvili, Johannes C. Paetzold, Hongwei Bran Li, Bjoern H. Menze
3D Vessel Graph Generation Using Denoising Diffusion. CoRR (2024)
Linus Kreitner, Johannes C. Paetzold, Nikolaus Rauch, Chen Chen, Ahmed M. Hagag, Alaa E. Fayed, Sobha Sivaprasad, Sebastian Rausch, Julian Weichsel, Bjoern H. Menze, Matthias Harders, Benjamin Knier, Daniel Rueckert, Martin J. Menten
Synthetic Optical Coherence Tomography Angiographs for Detailed Retinal Vessel Segmentation Without Human Annotations. IEEE Trans. Medical Imaging 43 (6) (2024)
Alexander H. Berger, Nico Stucki, Laurin Lux, Vincent Bürgin, Suprosanna Shit, Anna Banaszak, Daniel Rueckert, Ulrich Bauer, Johannes C. Paetzold
Topologically faithful multi-class segmentation in medical images. CoRR (2024)
Robert Graf, Paul-Sören Platzek, Evamaria Olga Riedel, Constanze Ramschütz, Sophie Starck, Hendrik Kristian Möller, Matan Atad, Henry Völzke, Robin Bülow, Carsten Oliver Schmidt, Julia Rüdebusch, Matthias Jung, Marco Reisert, Jakob Weiss, Maximilian Löffler, Fabian Bamberg, Bene Wiestler, Johannes C. Paetzold, Daniel Rueckert, Jan Stefan Kirschke
TotalVibeSegmentator: Full Torso Segmentation for the NAKO and UK Biobank in Volumetric Interpolated Breath-hold Examination Body Images. CoRR (2024)
Kaiyuan Yang, Fabio Musio, Yihui Ma, Norman Juchler, Johannes C. Paetzold, Rami Al-Maskari, Luciano Höher, Hongwei Bran Li, Ibrahim Ethem Hamamci, Anjany Sekuboyina, Suprosanna Shit, Houjing Huang, Diana Waldmannstetter, Florian Kofler, Fernando Navarro, Martin J. Menten, Ivan Ezhov, Daniel Rueckert, Iris N. Vos, Ynte M. Ruigrok, Birgitta K. Velthuis, Hugo J. Kuijf, Julien Hämmerli, Catherine Wurster, Philippe Bijlenga, Laura Westphal, Jeroen Bisschop, Elisa Colombo, Hakim Baazaoui, Andrew Makmur, James Hallinan, Benedikt Wiestler, Jan S. Kirschke, Roland Wiest, Emmanuel Montagnon, Laurent Létourneau-Guillon, Adrian Galdran, Francesco Galati, Daniele Falcetta, Maria A. Zuluaga, Chaolong Lin, Haoran Zhao, Zehan Zhang, Sinyoung Ra, Jongyun Hwang, Hyunjin Park, Junqiang Chen, Marek Wodzinski, Henning Müller, et al.
Benchmarking the CoW with the TopCoW Challenge: Topology-Aware Anatomical Segmentation of the Circle of Willis for CTA and MRA. CoRR (2023)
Tamara T. Mueller, Johannes C. Paetzold, Chinmay Prabhakar, Dmitrii Usynin, Daniel Rueckert, Georgios Kaissis
Differentially Private Graph Neural Networks for Whole-Graph Classification. IEEE Trans. Pattern Anal. Mach. Intell. 45 (6) (2023)
Nico Stucki, Johannes C. Paetzold, Suprosanna Shit, Bjoern H. Menze, Ulrich Bauer
Topologically Faithful Image Segmentation via Induced Matching of Persistence Barcodes. ICML (2023)
Robbie Holland, Oliver Leingang, Christopher Holmes, Philipp Anders, Rebecca Kaye, Sophie Riedl, Johannes C. Paetzold, Ivan Ezhov, Hrvoje Bogunovic, Ursula Schmidt-Erfurth, Hendrik P. N. Scholl, Sobha Sivaprasad, Andrew J. Lotery, Daniel Rueckert, Martin J. Menten
Clustering Disease Trajectories in Contrastive Feature Space for Biomarker Proposal in Age-Related Macular Degeneration. MICCAI (7) (2023)
Linus Kreitner, Johannes C. Paetzold, Nikolaus Rauch, Chen Chen, Ahmed M. Hagag, Alaa E. Fayed, Sobha Sivaprasad, Sebastian Rausch, Julian Weichsel, Bjoern H. Menze, Matthias Harders, Benjamin Knier, Daniel Rueckert, Martin J. Menten
Detailed retinal vessel segmentation without human annotations using simulated optical coherence tomography angiographs. CoRR (2023)
Chinmay Prabhakar, Hongwei Bran Li, Johannes C. Paetzold, Timo Loehr, Chen Niu, Mark Mühlau, Daniel Rueckert, Benedikt Wiestler, Bjoern H. Menze
Self-pruning Graph Neural Network for Predicting Inflammatory Disease Activity in Multiple Sclerosis from Brain MR Images. MICCAI (8) (2023)
Martin J. Menten, Johannes C. Paetzold, Veronika A. Zimmer, Suprosanna Shit, Ivan Ezhov, Robbie Holland, Monika Probst, Julia A. Schnabel, Daniel Rueckert
A skeletonization algorithm for gradient-based optimization. ICCV (2023)
Bastian Wittmann, Johannes C. Paetzold, Chinmay Prabhakar, Daniel Rueckert, Bjoern H. Menze
Link Prediction for Flow-Driven Spatial Networks. CoRR (2023)
Chinmay Prabhakar, Suprosanna Shit, Johannes C. Paetzold, Ivan Ezhov, Rajat Koner, Hongwei Li, Florian Sebastian Kofler, Bjoern H. Menze
Vesselformer: Towards Complete 3D Vessel Graph Generation from Images. MIDL (2023)
Robbie Holland, Oliver Leingang, Christopher Holmes, Philipp Anders, Johannes C. Paetzold, Rebecca Kaye, Sophie Riedl, Hrvoje Bogunovic, Ursula Schmidt-Erfurth, Lars Fritsche, Hendrik P. N. Scholl, Sobha Sivaprasad, Andrew J. Lotery, Daniel Rueckert, Martin J. Menten
Clustering disease trajectories in contrastive feature space for biomarker discovery in age-related macular degeneration. CoRR (2023)
Chinmay Prabhakar, Hongwei Bran Li, Johannes C. Paetzold, Timo Loehr, Chen Niu, Mark Mühlau, Daniel Rueckert, Benedikt Wiestler, Bjoern H. Menze
Self-pruning Graph Neural Network for Predicting Inflammatory Disease Activity in Multiple Sclerosis from Brain MR Images. CoRR (2023)
Leon Mächler, Ivan Ezhov, Suprosanna Shit, Johannes C. Paetzold
FedPIDAvg: A PID controller inspired aggregation method for Federated Learning. CoRR (2023)
Martin J. Menten, Johannes C. Paetzold, Veronika A. Zimmer, Suprosanna Shit, Ivan Ezhov, Robbie Holland, Monika Probst, Julia A. Schnabel, Daniel Rueckert
A skeletonization algorithm for gradient-based optimization. CoRR (2023)
Ivan Ezhov, Kevin Scibilia, Katharina Franitza, Felix Steinbauer, Suprosanna Shit, Lucas Zimmer, Jana Lipková, Florian Kofler, Johannes C. Paetzold, Luca Canalini, Diana Waldmannstetter, Martin J. Menten, Marie Metz, Benedikt Wiestler, Bjoern H. Menze
Learn-Morph-Infer: A new way of solving the inverse problem for brain tumor modeling. Medical Image Anal. 83 (2023)
Patrick Bilic, Patrick Ferdinand Christ, Hongwei Li, Eugene Vorontsov, Avi Ben-Cohen, Georgios Kaissis, Adi Szeskin, Colin Jacobs, Gabriel Efrain Humpire Mamani, Gabriel Chartrand, Fabian Lohöfer, Julian Walter Holch, Wieland H. Sommer, Felix Hofmann, Alexandre Hostettler, Naama Lev-Cohain, Michal Drozdzal, Michal Marianne Amitai, Refael Vivanti, Jacob Sosna, Ivan Ezhov, Anjany Sekuboyina, Fernando Navarro, Florian Kofler, Johannes C. Paetzold, Suprosanna Shit, Xiaobin Hu, Jana Lipková, Markus Rempfler, Marie Piraud, Jan Kirschke, Benedikt Wiestler, Zhiheng Zhang, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Michela Antonelli, Woong Bae, Miriam Bellver, Lei Bi, Hao Chen, Grzegorz Chlebus, Erik B. Dam, Qi Dou, Chi-Wing Fu, Bogdan Georgescu, Xavier Giró-i-Nieto, Felix Grün, Xu Han, Pheng-Ann Heng, Jürgen Hesser, Jan Hendrik Moltz, Christian Igel, Fabian Isensee, Paul Jäger, Fucang Jia, Krishna Chaitanya Kaluva, Mahendra Khened, Ildoo Kim, Jae-Hun Kim, Sungwoong Kim, Simon Kohl, Tomasz K. Konopczynski, Avinash Kori, Ganapathy Krishnamurthi, Fan Li, Hongchao Li, Junbo Li, Xiaomeng Li, John S. Lowengrub, Jun Ma, Klaus H. Maier-Hein, Kevis-Kokitsi Maninis, Hans Meine, Dorit Merhof, Akshay Pai, Mathias Perslev, Jens Petersen, Jordi Pont-Tuset, Jin Qi, Xiaojuan Qi, Oliver Rippel, Karsten Roth, Ignacio Sarasua, Andrea Schenk, Zengming Shen, Jordi Torres, Christian Wachinger, Chunliang Wang, Leon Weninger, Jianrong Wu, Daguang Xu, Xiaoping Yang, Simon Chun-Ho Yu, Yading Yuan, Miao Yue, Liping Zhang, Manuel Jorge Cardoso, Spyridon Bakas, Rickmer Braren, Volker Heinemann, Christopher Pal, An Tang, Samuel Kadoury, Luc Soler, Bram van Ginneken, Hayit Greenspan, Leo Joskowicz, Bjoern H. Menze
The Liver Tumor Segmentation Benchmark (LiTS). Medical Image Anal. 84 (2023)
Martin J. Menten, Johannes C. Paetzold, Alina Dima, Bjoern H. Menze, Benjamin Knier, Daniel Rueckert
Physiology-Based Simulation of the Retinal Vasculature Enables Annotation-Free Segmentation of OCT Angiographs. MICCAI (8) (2022)
Felix Meissen, Johannes C. Paetzold, Georgios Kaissis, Daniel Rueckert
Unsupervised Anomaly Localization with Structural Feature-Autoencoders. CoRR (2022)
Linus Kreitner, Ivan Ezhov, Daniel Rueckert, Johannes C. Paetzold, Martin J. Menten
Automated analysis of diabetic retinopathy using vessel segmentation maps as inductive bias. CoRR (2022)
Izabela Horvath, Johannes C. Paetzold, Oliver Schoppe, Rami Al-Maskari, Ivan Ezhov, Suprosanna Shit, Hongwei Li, Ali Ertürk, Bjoern H. Menze
METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy. WACV (2022)
Tamara T. Mueller, Johannes C. Paetzold, Chinmay Prabhakar, Dmitrii Usynin, Daniel Rueckert, Georgios Kaissis
Differentially Private Graph Classification with GNNs. CoRR (2022)
Chinmay Prabhakar, Anjany Sekuboyina, Hongwei Bran Li, Johannes C. Paetzold, Suprosanna Shit, Tamaz Amiranashvili, Jens Kleesiek, Bjoern H. Menze
Structured Knowledge Graphs for Classifying Unseen Patterns in Radiographs. GeoMedIA (2022)
Nico Stucki, Johannes C. Paetzold, Suprosanna Shit, Bjoern H. Menze, Ulrich Bauer
Topologically faithful image segmentation via induced matching of persistence barcodes. CoRR (2022)
Suprosanna Shit, Rajat Koner, Bastian Wittmann, Johannes C. Paetzold, Ivan Ezhov, Hongwei Li, Jiazhen Pan, Sahand Sharifzadeh, Georgios Kaissis, Volker Tresp, Bjoern H. Menze
Relationformer: A Unified Framework for Image-to-Graph Generation. ECCV (37) (2022)
Suprosanna Shit, Judith Zimmermann, Ivan Ezhov, Johannes C. Paetzold, Augusto Fava-Sanches, Carolin M. Pirkl, Bjoern H. Menze
SRflow: Deep learning based super-resolution of 4D-flow MRI data. Frontiers Artif. Intell. 5 (2022)
Dmitrii Usynin, Helena Klause, Johannes C. Paetzold, Daniel Rueckert, Georgios Kaissis
Can Collaborative Learning Be Private, Robust and Scalable? DeCaF/FAIR@MICCAI (2022)
Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. CoRR (2022)
Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. BrainLes@MICCAI (2022)
Suprosanna Shit, Rajat Koner, Bastian Wittmann, Johannes C. Paetzold, Ivan Ezhov, Hongwei Li, Jiazhen Pan, Sahand Sharifzadeh, Georgios Kaissis, Volker Tresp, Bjoern H. Menze
Relationformer: A Unified Framework for Image-to-Graph Generation. CoRR (2022)
Leon Mächler, Ivan Ezhov, Suprosanna Shit, Johannes C. Paetzold
FedPIDAvg: A PID Controller Inspired Aggregation Method for Federated Learning. BrainLes@MICCAI (2) (2022)
Martin J. Menten, Johannes C. Paetzold, Alina Dima, Bjoern H. Menze, Benjamin Knier, Daniel Rueckert
Physiology-based simulation of the retinal vasculature enables annotation-free segmentation of OCT angiographs. CoRR (2022)
Ivan Ezhov, Marcel Rosier, Lucas Zimmer, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Kevin Scibilia, Leon Mächler, Katharina Franitza, Tamaz Amiranashvili, Marie Metz, Sailesh Conjeti, Benedikt Wiestler, Bjoern H. Menze
Casting the inverse problem as a database query. The case of personalized tumor growth modeling. CoRR (2022)
Tamara T. Mueller, Dmitrii Usynin, Johannes C. Paetzold, Daniel Rueckert, Georgios Kaissis
SoK: Differential Privacy on Graph-Structured Data. CoRR (2022)
Hongwei Bran Li, Chinmay Prabhakar, Suprosanna Shit, Johannes C. Paetzold, Tamaz Amiranashvili, Jianguo Zhang, Daniel Rueckert, Juan Eugenio Iglesias, Benedikt Wiestler, Bjoern H. Menze
A Domain-specific Perceptual Metric via Contrastive Self-supervised Representation: Applications on Natural and Medical Images. CoRR (2022)
Ivan Ezhov, Marcel Rosier, Lucas Zimmer, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Kevin Scibilia, Felix Steinbauer, Leon Maechler, Katharina Franitza, Tamaz Amiranashvili, Martin J. Menten, Marie Metz, Sailesh Conjeti, Benedikt Wiestler, Bjoern H. Menze
A for-loop is all you need. For solving the inverse problem in the case of personalized tumor growth modeling. ML4H@NeurIPS (2022)
Ivan Ezhov, Tudor Mot, Suprosanna Shit, Jana Lipková, Johannes C. Paetzold, Florian Kofler, Chantal Pellegrini, Marcel Kollovieh, Fernando Navarro, Hongwei Li, Marie Metz, Benedikt Wiestler, Bjoern H. Menze
Geometry-Aware Neural Solver for Fast Bayesian Calibration of Brain Tumor Models. IEEE Trans. Medical Imaging 41 (5) (2022)
Linus Kreitner, Ivan Ezhov, Daniel Rueckert, Johannes C. Paetzold, Martin J. Menten
Automated Analysis of Diabetic Retinopathy Using Vessel Segmentation Maps as Inductive Bias. MIDOG/DRAC@MICCAI (2022)
Felix Meissen, Johannes C. Paetzold, Georgios Kaissis, Daniel Rueckert
Unsupervised Anomaly Localization with Structural Feature-Autoencoders. BrainLes@MICCAI (2022)
Suprosanna Shit, Johannes C. Paetzold, Anjany Sekuboyina, Ivan Ezhov, Alexander Unger, Andrey Zhylka, Josien P. W. Pluim, Ulrich Bauer, Bjoern H. Menze
clDice - A Novel Topology-Preserving Loss Function for Tubular Structure Segmentation. CVPR (2021)
Johannes C. Paetzold, Julian McGinnis, Suprosanna Shit, Ivan Ezhov, Paul Büschl, Chinmay Prabhakar, Anjany Sekuboyina, Mihail I. Todorov, Georgios Kaissis, Ali Ertürk, Stephan Günnemann, Bjoern H. Menze
Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience. NeurIPS Datasets and Benchmarks (2021)
Florian Kofler, Ivan Ezhov, Fabian Isensee, Fabian Balsiger, Christoph Berger, Maximilian Koerner, Johannes C. Paetzold, Hongwei Li, Suprosanna Shit, Richard McKinley, Spyridon Bakas, Claus Zimmer, Donna P. Ankerst, Jan Kirschke, Benedikt Wiestler, Bjoern H. Menze
Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient. CoRR (2021)
Giles Tetteh, Fernando Navarro, Johannes C. Paetzold, Jan Kirschke, Claus Zimmer, Bjoern H. Menze
A Deep Learning Approach to Predicting Collateral Flow in Stroke Patients Using Radiomic Features from Perfusion Images. CoRR (2021)
Ivan Ezhov, Kevin Scibilia, Katharina Franitza, Felix Steinbauer, Suprosanna Shit, Lucas Zimmer, Jana Lipková, Florian Kofler, Johannes C. Paetzold, Luca Canalini, Diana Waldmannstetter, Martin Menten, Marie Metz, Benedikt Wiestler, Bjoern H. Menze
Learn-Morph-Infer: a new way of solving the inverse problem for brain tumor modeling. CoRR (2021)
Leon Mächler, Ivan Ezhov, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Timo Loehr, Benedikt Wiestler, Bjoern H. Menze
FedCostWAvg: A new averaging for better Federated Learning. CoRR (2021)
Lucas Fidon, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Sébastien Ourselin, Tom Vercauteren
Generalized Wasserstein Dice Loss, Test-Time Augmentation, and Transformers for the BraTS 2021 Challenge. BrainLes@MICCAI (2) (2021)
Fabian Balsiger, Alain Jungo, Naren Akash R. J, Jianan Chen, Ivan Ezhov, Shengnan Liu, Jun Ma, Johannes C. Paetzold, Vishva Saravanan R, Anjany Sekuboyina, Suprosanna Shit, Yannick Suter, Moshood Yekini, Guodong Zeng, Markus Rempfler
The MICCAI Hackathon on reproducibility, diversity, and selection of papers at the MICCAI conference. CoRR (2021)
Alina Dima, Johannes C. Paetzold, Friederike Jungmann, Tristan Lemke, Philipp Raffler, Georgios Kaissis, Daniel Rueckert, Rickmer Braren
Segmentation of Peripancreatic Arteries in Multispectral Computed Tomography Imaging. MLMI@MICCAI (2021)
Izabela Horvath, Johannes C. Paetzold, Oliver Schoppe, Rami Al-Maskari, Ivan Ezhov, Suprosanna Shit, Hongwei Li, Ali Ertuerk, Bjoern H. Menze
METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy. CoRR (2021)
Suprosanna Shit, Ivan Ezhov, Leon Mächler, Abinav R., Jana Lipková, Johannes C. Paetzold, Florian Kofler, Marie Piraud, Bjoern H. Menze
Semi-Implicit Neural Solver for Time-dependent Partial Differential Equations. CoRR (2021)
Suprosanna Shit, Dhritiman Das, Ivan Ezhov, Johannes C. Paetzold, Augusto F. Sanches, Nils Thuerey, Bjoern H. Menze
Velocity-To-Pressure (V2P) - Net: Inferring Relative Pressures from Time-Varying 3D Fluid Flow Velocities. IPMI (2021)
Anjany Sekuboyina, Malek El Husseini, Amirhossein Bayat, Maximilian Löffler, Hans Liebl, Hongwei Li, Giles Tetteh, Jan Kukacka, Christian Payer, Darko Stern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Kevin Brown, Alexandre Kirszenberg, Élodie Puybareau, Di Chen, Yiwei Bai, Brandon H. Rapazzo, Timyoas Yeah, Amber Zhang, Shangliang Xu, Feng Hou, Zhiqiang He, Chan Zeng, Zheng Xiangshang, Xu Liming, Tucker J. Netherton, Raymond P. Mumme, Laurence E. Court, Zixun Huang, Chenhang He, Li-Wen Wang, Sai Ho Ling, Lê Duy Huynh, Nicolas Boutry, Roman Jakubícek, Jirí Chmelík, Supriti Mulay, Mohanasankar Sivaprakasam, Johannes C. Paetzold, Suprosanna Shit, Ivan Ezhov, Benedikt Wiestler, Ben Glocker, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke
VerSe: A Vertebrae labelling and segmentation benchmark for multi-detector CT images. Medical Image Anal. 73 (2021)
Johannes C. Paetzold, Julian McGinnis, Suprosanna Shit, Ivan Ezhov, Paul Büschl, Chinmay Prabhakar, Mihail I. Todorov, Anjany Sekuboyina, Georgios Kaissis, Ali Ertürk, Stephan Günnemann, Bjoern H. Menze
Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience (VesselGraph). CoRR (2021)
Leon Mächler, Ivan Ezhov, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Timo Loehr, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
FedCostWAvg: A New Averaging for Better Federated Learning. BrainLes@MICCAI (2) (2021)
Lucas Fidon, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Sébastien Ourselin, Tom Vercauteren
Generalized Wasserstein Dice Loss, Test-time Augmentation, and Transformers for the BraTS 2021 challenge. CoRR (2021)
Kelly Payette, Priscille de Dumast, Hamza Kebiri, Ivan Ezhov, Johannes C. Paetzold, Suprosanna Shit, Asim Iqbal, Romesa Khan, Raimund Kottke, Patrice Grehten, Hui Ji, Levente Lanczi, Marianna Nagy, Monika Beresova, Thi Dao Nguyen, Giancarlo Natalucci, Theofanis Karayannis, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab
A comparison of automatic multi-tissue segmentation methods of the human fetal brain using the FeTA Dataset. CoRR (2020)
Stefan Gerl, Johannes C. Paetzold, Hailong He, Ivan Ezhov, Suprosanna Shit, Florian Kofler, Amirhossein Bayat, Giles Tetteh, Vasilis Ntziachristos, Bjoern H. Menze
A Distance-Based Loss for Smooth and Continuous Skin Layer Segmentation in Optoacoustic Images. MICCAI (6) (2020)
Amirhossein Bayat, Anjany Sekuboyina, Johannes C. Paetzold, Christian Payer, Darko Stern, Martin Urschler, Jan S. Kirschke, Bjoern H. Menze
Inferring the 3D Standing Spine Posture from 2D Radiographs. CoRR (2020)
Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Bjoern H. Menze
Aν-Net: Automatic Detection and Segmentation of Aneurysm. CADA@MICCAI (2020)
Ahmad B. Qasim, Ivan Ezhov, Suprosanna Shit, Oliver Schoppe, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jana Lipková, Hongwei Li, Bjoern H. Menze
Red-GAN: Attacking class imbalance via conditioned generation. Yet another medical imaging perspective. MIDL (2020)
Stefan Gerl, Johannes C. Paetzold, Hailong He, Ivan Ezhov, Suprosanna Shit, Florian Kofler, Amirhossein Bayat, Giles Tetteh, Vasilis Ntziachristos, Bjoern H. Menze
A distance-based loss for smooth and continuous skin layer segmentation in optoacoustic images. CoRR (2020)
Ahmad B. Qasim, Ivan Ezhov, Suprosanna Shit, Oliver Schoppe, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jana Lipková, Hongwei Li, Bjoern H. Menze
Red-GAN: Attacking class imbalance via conditioned generation. Yet another medical imaging perspective. CoRR (2020)
Ivan Ezhov, Tudor Mot, Suprosanna Shit, Jana Lipková, Johannes C. Paetzold, Florian Kofler, Fernando Navarro, Marie Metz, Benedikt Wiestler, Björn H. Menze
Real-time Bayesian personalization via a learnable brain tumor growth model. CoRR (2020)
Amirhossein Bayat, Anjany Sekuboyina, Johannes C. Paetzold, Christian Payer, Darko Stern, Martin Urschler, Jan S. Kirschke, Bjoern H. Menze
Inferring the 3D Standing Spine Posture from 2D Radiographs. MICCAI (6) (2020)
Suprosanna Shit, Johannes C. Paetzold, Anjany Sekuboyina, Andrey Zhylka, Ivan Ezhov, Alexander Unger, Josien P. W. Pluim, Giles Tetteh, Bjoern H. Menze
clDice - a Topology-Preserving Loss Function for Tubular Structure Segmentation. CoRR (2020)
Fernando Navarro, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Andrei Gafita, Jan Peeken, Stephanie Combs, Bjoern H. Menze
Shape-Aware Complementary-Task Learning for Multi-Organ Segmentation. CoRR (2019)
Florian Kofler, Johannes C. Paetzold, Ivan Ezhov, Suprosanna Shit, Daniel Krahulec, Jan S. Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
A Baseline for Predicting Glioblastoma Patient Survival Time with Classical Statistical Models and Primitive Features Ignoring Image Information. BrainLes@MICCAI (1) (2019)
Hongwei Li, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jianguo Zhang, Jan S. Kirschke, Benedikt Wiestler, Bjoern H. Menze
DiamondGAN: Unified Multi-modal Generative Adversarial Networks for MRI Sequences Synthesis. MICCAI (4) (2019)
Hongwei Li, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jianguo Zhang, Jan S. Kirschke, Benedikt Wiestler, Bjoern H. Menze
DiamondGAN: Unified Multi-Modal Generative Adversarial Networks for MRI Sequences Synthesis. CoRR (2019)
Fernando Navarro, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Andrei Gafita, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze
Shape-Aware Complementary-Task Learning for Multi-organ Segmentation. MLMI@MICCAI (2019)