Jussi Tohka

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 46

Top Topics

Convolutional Neural Networks

Image Segmentation

Top Venues

Neuroinformatics

Comput. Intell. Neurosci.

Publications

Juan Miguel Valverde, Artem Shatillo, Jussi Tohka
Sauron U-Net: Simple automated redundancy elimination in medical image segmentation via filter pruning. Neurocomputing 594 (2024)
Vandad Imani, Elaheh Moradi, Carlos Sevilla-Salcedo, Vittorio Fortino, Jussi Tohka
Optimizing Feature Selection for Binary Classification with Noisy Labels: A Genetic Algorithm Approach. ACR (2024)
Mohammad Khateri, Morteza Ghahremani, Alejandra Sierra, Jussi Tohka
No-Clean-Reference Image Super-Resolution: Application to Electron Microscopy. CoRR (2024)
Vandad Imani, Elaheh Moradi, Carlos Sevilla-Salcedo, Vittorio Fortino, Jussi Tohka
Optimizing Feature Selection for Binary Classification with Noisy Labels: A Genetic Algorithm Approach. CoRR (2024)
Mohammad Khateri, Morteza Ghahremani, Alejandra Sierra, Jussi Tohka
No-Clean-Reference Image Super-Resolution: Application to Electron Microscopy. IEEE Trans. Computational Imaging 10 (2024)
Olivier Rukundo, Andrea Behanova, Riccardo de Feo, Seppo Ronkko, Joni Oja, Jussi Tohka
Convolutional Neural Networks for Automatic Detection of Intact Adenovirus from TEM Imaging with Debris, Broken and Artefacts Particles. CoRR (2023)
Vandad Imani, Carlos Sevilla-Salcedo, Vittorio Fortino, Jussi Tohka
Multi-Objective Genetic Algorithm for Multi-View Feature Selection. CoRR (2023)
Juan Miguel Valverde, Artem Shatillo, Riccardo de Feo, Jussi Tohka
Automatic Cerebral Hemisphere Segmentation in Rat MRI with Ischemic Lesions via Attention-based Convolutional Neural Networks. Neuroinformatics 21 (1) (2023)
Mohammad Khateri, Morteza Ghahremani, Alejandra Sierra, Jussi Tohka
Self-Supervised Super-Resolution Approach for Isotropic Reconstruction of 3D Electron Microscopy Images from Anisotropic Acquisition. CoRR (2023)
Juan Miguel Valverde, Jussi Tohka
Region-wise loss for biomedical image segmentation. Pattern Recognit. 136 (2023)
Mohammad Khateri, Morteza Ghahremani, Alejandra Sierra, Jussi Tohka
Self-Supervised Super-Resolution Approach for Isotropic Reconstruction of 3D Electron Microscopy Images from Anisotropic Acquisition. EUVIP (2023)
Morteza Ghahremani, Mohammad Khateri, Alejandra Sierra, Jussi Tohka
Adversarial Distortion Learning for Medical Image Denoising. CoRR (2022)
Andrea Behanova, Ali Abdollahzadeh, Ilya Belevich, Eija Jokitalo, Alejandra Sierra, Jussi Tohka
gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy. Comput. Methods Programs Biomed. 220 (2022)
Carlos Sevilla-Salcedo, Vandad Imani, Pablo M. Olmos, Vanessa Gómez-Verdejo, Jussi Tohka
Multi-task longitudinal forecasting with missing values on Alzheimer's Disease. CoRR (2022)
Juan Miguel Valverde, Artem Shatillo, Jussi Tohka
Sauron U-Net: Simple automated redundancy elimination in medical image segmentation via filter pruning. CoRR (2022)
Carlos Sevilla-Salcedo, Vandad Imani, Pablo M. Olmos, Vanessa Gómez-Verdejo, Jussi Tohka
Multi-task longitudinal forecasting with missing values on Alzheimer's disease. Comput. Methods Programs Biomed. 226 (2022)
Kimberley M. Timmins, Irene C. van der Schaaf, Edwin Bennink, Ynte M. Ruigrok, Xingle An, Michael Baumgartner, Pascal Bourdon, Riccardo de Feo, Tommaso Di Noto, Florian Dubost, Augusto Fava-Sanches, Xue Feng, Corentin Giroud, Inteneural Group, Minghui Hu, Paul F. Jaeger, Juhana Kaiponen, Michal Klimont, Yuexiang Li, Hongwei Li, Yi Lin, Timo Loehr, Jun Ma, Klaus H. Maier-Hein, Guillaume Marie, Bjoern H. Menze, Jonas Richiardi, Saifeddine Rjiba, Dhaval Shah, Suprosanna Shit, Jussi Tohka, Thierry Urruty, Urszula Walinska, Xiaoping Yang, Yunqiao Yang, Yin Yin, Birgitta K. Velthuis, Hugo J. Kuijf
Comparing methods of detecting and segmenting unruptured intracranial aneurysms on TOF-MRAS: The ADAM challenge. NeuroImage 238 (2021)
Juan Miguel Valverde, Vandad Imani, Ali Abdollahzadeh, Riccardo de Feo, Mithilesh Prakash, Robert Ciszek, Jussi Tohka
Transfer Learning in Magnetic Resonance Brain Imaging: a Systematic Review. CoRR (2021)
Vandad Imani, Mithilesh Prakash, Marzieh Zare, Jussi Tohka
Comparison of single and multitask learning for predicting cognitive decline based on MRI data. CoRR (2021)
Jussi Tohka, Mark J. van Gils
Evaluation of machine learning algorithms for health and wellness applications: A tutorial. Comput. Biol. Medicine 132 (2021)
Vandad Imani, Mithilesh Prakash, Marzieh Zare, Jussi Tohka
Comparison of Single and Multitask Learning for Predicting Cognitive Decline Based on MRI Data. IEEE Access 9 (2021)
Andrea Behanova, Ali Abdollahzadeh, Ilya Belevich, Eija Jokitalo, Alejandra Sierra, Jussi Tohka
gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy. CoRR (2021)
Juan Miguel Valverde, Artem Shatillo, Riccardo de Feo, Jussi Tohka
Automatic hemisphere segmentation in rodent MRI with lesions. CoRR (2021)
Juan Miguel Valverde, Vandad Imani, Ali Abdollahzadeh, Riccardo de Feo, Mithilesh Prakash, Robert Ciszek, Jussi Tohka
Transfer Learning in Magnetic Resonance Brain Imaging: A Systematic Review. J. Imaging 7 (4) (2021)
Ali Abdollahzadeh, Alejandra Sierra, Jussi Tohka
Cylindrical Shape Decomposition for 3D Segmentation of Tubular Objects. IEEE Access 9 (2021)
Juan Miguel Valverde, Jussi Tohka
Region-wise Loss for Biomedical Image Segmentation. CoRR (2021)
Riccardo de Feo, Artem Shatillo, Alejandra Sierra, Juan Miguel Valverde, Olli Gröhn, Federico Giove, Jussi Tohka
Automated joint skull-stripping and segmentation with Multi-Task U-Net in large mouse brain MRI databases. NeuroImage 229 (2021)
Carlos Sevilla-Salcedo, Vanessa Gómez-Verdejo, Jussi Tohka
Regularized Bagged Canonical Component Analysis for Multiclass Learning in Brain Imaging. Neuroinformatics 18 (4) (2020)
Juha Salmi, Mostafa Metwaly, Jussi Tohka, Kimmo Alho, Sami Leppämäki, Pekka Tani, Anniina Koski, Tamara Vanderwal, Matti Laine
ADHD desynchronizes brain activity during watching a distracted multi-talker conversation. NeuroImage 216 (2020)
Jussi Tohka, Mark J. van Gils
Evaluation of machine learning algorithms for Health and Wellness applications: a tutorial. CoRR (2020)
Juan Miguel Valverde, Artem Shatillo, Riccardo de Feo, Olli Gröhn, Alejandra Sierra, Jussi Tohka
RatLesNetv2: A Fully Convolutional Network for Rodent Brain Lesion Segmentation. CoRR (2020)
Juan Miguel Valverde, Artem Shatillo, Riccardo de Feo, Olli Gröhn, Alejandra Sierra, Jussi Tohka
Automatic Rodent Brain MRI Lesion Segmentation with Fully Convolutional Networks. MLMI@MICCAI (2019)
Ali Abdollahzadeh, Alejandra Sierra, Jussi Tohka
Cylindrical Shape Decomposition Algorithm for 3D Segmentation. CoRR (2019)
Juan Miguel Valverde, Vandad Imani, John D. Lewis, Jussi Tohka
Predicting intelligence based on cortical WM/GM contrast, cortical thickness and volumetry. CoRR (2019)
Syeda Sakira Hassan, Heikki Huttunen, Jari Niemi, Jussi Tohka
Bayesian receiver operating characteristic metric for linear classifiers. Pattern Recognit. Lett. 128 (2019)
Vanessa Gómez-Verdejo, Emilio Parrado-Hernández, Jussi Tohka
Sign-Consistency Based Variable Importance for Machine Learning in Brain Imaging. Neuroinformatics 17 (4) (2019)
Juan Miguel Valverde, Vandad Imani, John D. Lewis, Jussi Tohka
Predicting Intelligence Based on Cortical WM/GM Contrast, Cortical Thickness and Volumetry. ABCD-NP@MICCAI (2019)
John D. Lewis, Vladimir S. Fonov, D. Louis Collins, Alan C. Evans, Jussi Tohka
Cortical and subcortical T1 white/gray contrast, chronological age, and cognitive performance. NeuroImage 196 (2019)
Syeda Sakira Hassan, Heikki Huttunen, Jari Niemi, Jussi Tohka
Bayesian Receiver Operating Characteristic Metric for Linear Classifiers. CoRR (2019)
Juan Miguel Valverde, Artem Shatillo, Riccardo de Feo, Olli Gröhn, Alejandra Sierra, Jussi Tohka
Automatic Rodent Brain MRI Lesion Segmentation with Fully Convolutional Networks. CoRR (2019)
John D. Lewis, Alan C. Evans, Jussi Tohka
T1 white/gray contrast as a predictor of chronological age, and an index of cognitive performance. NeuroImage 173 (2018)
Elaheh Moradi, Budhachandra S. Khundrakpam, John D. Lewis, Alan C. Evans, Jussi Tohka
Predicting symptom severity in autism spectrum disorder based on cortical thickness measures in agglomerative data. NeuroImage 144 (2017)
Vanessa Gómez-Verdejo, Jussi Tohka
Voxel importance in classifier ensembles based on sign consistency patterns: application to sMRI. PRNI (2016)
Jussi Tohka, Elaheh Moradi, Heikki Huttunen
Comparison of Feature Selection Techniques in Machine Learning for Anatomical Brain MRI in Dementia. Neuroinformatics 14 (3) (2016)
Juha Pajula, Jussi Tohka
How Many Is Enough? Effect of Sample Size in Inter-Subject Correlation Analysis of fMRI. Comput. Intell. Neurosci. 2016 (2016)
Jussi Tohka, Pierre Bellec, Christophe Grova, Anthonin Reilhac
Simulation and Validation in Brain Image Analysis. Comput. Intell. Neurosci. 2016 (2016)
Budhachandra S. Khundrakpam, Jussi Tohka, Alan C. Evans
Prediction of brain maturity based on cortical thickness at different spatial resolutions. NeuroImage 111 (2015)
Elaheh Moradi, Antonietta Pepe, Christian Gaser, Heikki Huttunen, Jussi Tohka
Machine learning framework for early MRI-based Alzheimer's conversion prediction in MCI subjects. NeuroImage 104 (2015)
Heikki Huttunen, Jussi Tohka
Model selection for linear classifiers using Bayesian error estimation. Pattern Recognit. 48 (11) (2015)
Elaheh Moradi, Jussi Tohka, Christian Gaser
Semi-supervised learning in MCI-to-ad conversion prediction - When is unlabeled data useful? PRNI (2014)
Jukka-Pekka Kauppi, Juha Pajula, Jussi Tohka
A versatile software package for inter-subject correlation based analyses of fMRI. Frontiers Neuroinformatics 8 (2014)
Sylvia Rueda, Sana Fathima, Caroline L. Knight, Mohammad Yaqub, Aris Papageorghiou, Bahbibi Rahmatullah, Alessandro Foi, Matteo Maggioni, Antonietta Pepe, Jussi Tohka, Richard V. Stebbing, John McManigle, Anca Ciurte, Xavier Bresson, Meritxell Bach Cuadra, Changming Sun, Gennady V. Ponomarev, Mikhail S. Gelfand, Marat D. Kazanov, Ching-Wei Wang, Hsiang-Chou Chen, Chun-Wei Peng, Chu-Mei Hung, J. Alison Noble
Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: A Grand Challenge. IEEE Trans. Medical Imaging 33 (4) (2014)
Alessandro Foi, Matteo Maggioni, Antonietta Pepe, Sylvia Rueda, J. Alison Noble, Aris T. Papageorghiou, Jussi Tohka
Difference of Gaussians revolved along elliptical paths for ultrasound fetal head segmentation. Comput. Medical Imaging Graph. 38 (8) (2014)
Antonietta Pepe, Ivo D. Dinov, Jussi Tohka
An automatic framework for quantitative validation of voxel based morphometry measures of anatomical brain asymmetry. NeuroImage 100 (2014)
Jussi Tohka
FAST-PVE: Extremely Fast Markov Random Field Based Brain MRI Tissue Classification. SCIA (2013)
Heikki Huttunen, Tapio Manninen, Jussi Tohka
Bayesian error estimation and model selection in sparse logistic regression. MLSP (2013)
Heikki Huttunen, Tapio Manninen, Jukka-Pekka Kauppi, Jussi Tohka
Mind reading with regularized multinomial logistic regression. Mach. Vis. Appl. 24 (6) (2013)
Antonietta Pepe, Laura Brandolini, Marco Piastra, Juha Koikkalainen, Jarmo Hietala, Jussi Tohka
Simplified Reeb Graph as Effective Shape Descriptor for the Striatum. MeshMed (2012)
Antonietta Pepe, Jussi Tohka
3D Bending of Surfaces and Volumes with an Application to Brain Torque Modeling. ICPRAM (2) (2012)
Jussi Tohka, Ulla Ruotsalainen
Imaging brain change across different time scales. Frontiers Neuroinformatics 6 (2012)
Jukka-Pekka Kauppi, Heikki Huttunen, Heikki Korkala, Iiro P. Jääskeläinen, Mikko Sams, Jussi Tohka
Face Prediction from fMRI Data during Movie Stimulus: Strategies for Feature Selection. ICANN (2) (2011)
Lu Zhao, Ulla Ruotsalainen, Jussi Hirvonen, Jarmo Hietala, Jussi Tohka
Automatic cerebral and cerebellar hemisphere segmentation in 3D MRI: Adaptive disconnection algorithm. Medical Image Anal. 14 (3) (2010)
Jukka-Pekka Kauppi, Iiro P. Jääskeläinen, Mikko Sams, Jussi Tohka
Inter-subject correlation of brain hemodynamic responses during watching a movie: localization in space and frequency. Frontiers Neuroinformatics 4 (2010)
José V. Manjón, Jussi Tohka, Montserrat Robles
Improved estimates of partial volume coefficients from noisy brain MRI using spatial context. NeuroImage 53 (2) (2010)
Harri Pölönen, Jussi Tohka, Ulla Ruotsalainen
Automatic intensity quantification of fluorescence targets from microscope images with maximum likelihood estimation. EUSIPCO (2009)
Harri Pölönen, Jussi Tohka, Ulla Ruotsalainen
Automatic Quantification of Fluorescence from Clustered Targets in Microscope Images. SCIA (2009)
Ricardo J. P. C. Farinha, Ulla Ruotsalainen, Jussi Hirvonen, Lauri Tuominen, Jarmo Hietala, José M. Fonseca, Jussi Tohka
Segmentation of Striatal Brain Structures from High Resolution PET Images. Int. J. Biomed. Imaging 2009 (2009)
Lu Zhao, Jarmo Hietala, Jussi Tohka
Shape Analysis of Human Brain Interhemispheric Fissure Bending in MRI. MICCAI (1) (2009)
Jussi Tohka, Karin Foerde, Adam R. Aron, Sabrina M. Tom, Arthur W. Toga, Russell A. Poldrack
Automatic independent component labeling for artifact removal in fMRI. NeuroImage 39 (3) (2008)
Jussi Tohka, Anthonin Reilhac
Deconvolution-based partial volume correction in Raclopride-PET and Monte Carlo comparison to MR-based method. NeuroImage 39 (4) (2008)
Harri Pölönen, Maurice Jansen, Jussi Tohka, Elina Ikonen, Ulla Ruotsalainen
Automatic method for caveolar structure detection and intensity distribution analysis from microscopy images. EUSIPCO (2007)
Evgeny Krestyannikov, Jussi Tohka, Ulla Ruotsalainen
Statistical Modeling of Attenuation-Corrected Pet Data with Application to Reconstruction of Regional Time Activity Curves. ISBI (2007)
Lu Zhao, Jussi Tohka, Ulla Ruotsalainen
Accurate 3D Left-Right Brain Hemisphere Segmentation in MR Images Based on Shape Bottlenecks and Partial Volume Estimation. SCIA (2007)
Jussi Tohka, Evgeny Krestyannikov, Ivo D. Dinov, Allan MacKenzie-Graham, David W. Shattuck, Ulla Ruotsalainen, Arthur W. Toga
Genetic Algorithms for Finite Mixture Model Based Voxel Classification in Neuroimaging. IEEE Trans. Medical Imaging 26 (5) (2007)
Dimitris Glotsos, Jussi Tohka, Jori Soukka, Juhani T. Soini, Ulla Ruotsalainen
Robust Estimation of Bioaffinity Assay Fluorescence Signals. IEEE Trans. Inf. Technol. Biomed. 10 (4) (2006)
Evgeny Krestyannikov, Jussi Tohka, Ulla Ruotsalainen
Segmentation of Dynamic Emission Tomography Data in Projection Space. CVAMIA (2006)
Edisson Albán, Jussi Tohka, Ulla Ruotsalainen
Adaptive edge detection based on 3D kernel functions for biomedical image analysis. Image Processing: Algorithms and Systems (2006)
Anu Juslin, Jussi Tohka
Unsupervised Segmentation of Cardiac PET Transmission Images for Automatic Heart Volume Extraction. EMBC (2006)
Jouni M. Mykkänen, Mikko Itäranta, Jussi Tohka
Object-Oriented Implementation for the Dual Surface Minimisation Algorithm. MIE (2005)
Jouni M. Mykkänen, Jussi Tohka, Jouni Luoma, Ulla Ruotsalainen
Automatic extraction of brain surface and mid-sagittal plane from PET images applying deformable models. Comput. Methods Programs Biomed. 79 (1) (2005)
Anu Juslin, Anthonin Reilhac, Margarita Magadán-Méndez, Edisson Albán, Jussi Tohka, Ulla Ruotsalainen
Assessment of Separation of Functional Components with ICA from Dynamic Cardiac Perfusion PET Phantom Images for Volume Extraction with Deformable Surface Models. FIMH (2005)
Dimitris Glotsos, Jussi Tohka, Panagiota Ravazoula, Dionisis A. Cavouras, George Nikiforidis
Automated diagnosis of brain tumours astrocytomas using probabilistic neural network clustering and support vector machines. Int. J. Neural Syst. 15 (1-2) (2005)
Jussi Tohka, Alex P. Zijdenbos, Alan C. Evans
Fast and robust parameter estimation for statistical partial volume models in brain MRI. NeuroImage 23 (1) (2004)
Jussi Tohka, Jouni M. Mykkänen
Deformable Mesh For Automated Surface Extraction From Noisy Images. Int. J. Image Graph. 4 (3) (2004)
Jouni M. Mykkänen, Jussi Tohka, Ulla Ruotsalainen
Delineation of drain Structures from Positron Emission Tomography Images with Deformable Models. MIE (2003)
Jussi Tohka
Surface Extraction from Volumetric Images Using Deformable Meshes: A Comparative Study. ECCV (3) (2002)
Jussi Tohka
Global Optimization of Deformable Surface Meshes Based on Genetic Algorithms. ICIAP (2001)