Hui Zhang

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 33

Top Topics

Corpus Callosum

Top Venues

Publications

Antoine Legouhy, Ross Callaghan, Hojjat Azadbakht, Hui Zhang
POLAFFINI: Efficient feature-based polyaffine initialization for improved non-linear image registration. CoRR (2024)
Antoine Legouhy, Ross Callaghan, Whitney Stee, Philippe Peigneux, Hojjat Azadbakht, Hui Zhang
Eddeep: Fast eddy-current distortion correction for diffusion MRI with deep learning. CoRR (2024)
Christopher S. Parker, Anna Schroder, Sean C. Epstein, James Cole, Daniel C. Alexander, Hui Zhang
Rician likelihood loss for quantitative MRI using self-supervised deep learning. CoRR (2023)
Antoine Legouhy, Mark S. Graham, Michele Guerreri, Whitney Stee, Thomas Villemonteix, Philippe Peigneux, Hui Zhang
Correction of Susceptibility Distortion in EPI: A Semi-supervised Approach with Deep Learning. CDMRI@MICCAI (2022)
Tobias Goodwin-Allcock, Jason D. McEwen, Robert Gray, Parashkev Nachev, Hui Zhang
How Can Spherical CNNs Benefit ML-Based Diffusion MRI Parameter Estimation? CDMRI@MICCAI (2022)
Marco Palombo, Andrada Ianus, Michele Guerreri, Daniel Nunes, Daniel C. Alexander, Noam Shemesh, Hui Zhang
Corrigendum to "SANDI: A compartment-based model for non-invasive apparent soma and neurite imaging by diffusion MRI" [Neuroimage 215 (2020), 116835]. NeuroImage 226 (2021)
Alberto De Luca, Andrada Ianus, Alexander Leemans, Marco Palombo, Noam Shemesh, Hui Zhang, Daniel C. Alexander, Markus Nilsson, Martijn Froeling, Geert Jan Biessels, Mauro Zucchelli, Matteo Frigo, Enes Albay, Sara Sedlar, Abib Alimi, Samuel Deslauriers-Gauthier, Rachid Deriche, Rutger Fick, Maryam Afzali, Tomasz Pieciak, Fabian Bogusz, Santiago Aja-Fernández, Evren Özarslan, Derek K. Jones, Haoze Chen, Mingwu Jin, Zhijie Zhang, Fengxiang Wang, Vishwesh Nath, Prasanna Parvathaneni, Jan Morez, Jan Sijbers, Ben Jeurissen, Shreyas Fadnavis, Stefan Endres, Ariel Rokem, Eleftherios Garyfallidis, Irina Sánchez, Vesna Prchkovska, Paulo Rodrigues, Bennett A. Landman, Kurt G. Schilling
On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: Chronicles of the MEMENTO challenge. NeuroImage 240 (2021)
Leevi Kerkelä, Fabio Nery, Ross Callaghan, Fenglei Zhou, Noemi G. Gyori, Filip Szczepankiewicz, Marco Palombo, Geoff J. M. Parker, Hui Zhang, Matt G. Hall, Chris A. Clark
Comparative analysis of signal models for microscopic fractional anisotropy estimation using q-space trajectory encoding. NeuroImage 242 (2021)
Ioana Hill, Marco Palombo, Mathieu D. Santin, Francesca Branzoli, Anne-Charlotte Philippe, Demian Wassermann, Marie-Stephane Aigrot, Bruno Stankoff, Anne Baron-Van Evercooren, Mehdi Felfli, Dominique Langui, Hui Zhang, Stéphane Lehéricy, Alexandra Petiet, Daniel C. Alexander, Olga Ciccarelli, Ivana Drobnjak
Machine learning based white matter models with permeability: An experimental study in cuprizone treated in-vivo mouse model of axonal demyelination. NeuroImage 224 (2021)
C. S. Parker, Tom Veale, Martina Bocchetta, C. F. Slattery, Ian B. Malone, David L. Thomas, Jonathan M. Schott, David M. Cash, Hui Zhang
Not all voxels are created equal: Reducing estimation bias in regional NODDI metrics using tissue-weighted means. NeuroImage 245 (2021)
Marco Palombo, Andrada Ianus, Michele Guerreri, Daniel Nunes, Daniel C. Alexander, Noam Shemesh, Hui Zhang
SANDI: A compartment-based model for non-invasive apparent soma and neurite imaging by diffusion MRI. NeuroImage 215 (2020)
Ross Callaghan, Daniel C. Alexander, Marco Palombo, Hui Zhang
ConFiG: Contextual Fibre Growth to generate realistic axonal packing for diffusion MRI simulation. NeuroImage 220 (2020)
Marco Palombo, Daniel C. Alexander, Hui Zhang
A generative model of realistic brain cells with application to numerical simulation of the diffusion-weighted MR signal. NeuroImage 188 (2019)
Ross Callaghan, Daniel C. Alexander, Hui Zhang, Marco Palombo
Contextual Fibre Growth to Generate Realistic Axonal Packing for Diffusion MRI Simulation. IPMI (2019)
Dafnis Batalle, Jonathan O'Muircheartaigh, Antonios Makropoulos, Christopher J. Kelly, Ralica Dimitrova, Emer J. Hughes, Joseph V. Hajnal, Hui Zhang, Daniel C. Alexander, A. David Edwards, Serena J. Counsell
. NeuroImage 185 (2019)
Jesper L. R. Andersson, Mark S. Graham, Ivana Drobnjak, Hui Zhang, Jon Campbell
Susceptibility-induced distortion that varies due to motion: Correction in diffusion MR without acquiring additional data. NeuroImage 171 (2018)
Hikaru Fukutomi, Matthew F. Glasser, Hui Zhang, Joonas A. A. Autio, Timothy S. Coalson, Tomohisa Okada, Kaori Togashi, David C. Van Essen, Takuya Hayashi
Neurite imaging reveals microstructural variations in human cerebral cortical gray matter. NeuroImage 182 (2018)
Fidel Alfaro-Almagro, Mark Jenkinson, Neal K. Bangerter, Jesper L. R. Andersson, Ludovica Griffanti, Gwenaëlle Douaud, Stamatios N. Sotiropoulos, Saâd Jbabdi, Moisés Hernández-Fernández, Emmanuel Vallée, Diego Vidaurre, Matthew A. Webster, Paul McCarthy, Christopher Rorden, Alessandro Daducci, Daniel C. Alexander, Hui Zhang, Iulius Dragonu, Paul M. Matthews, Karla L. Miller, Stephen M. Smith
Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank. NeuroImage 166 (2018)
Woojin Jung, Jin-Gu Lee, Hyeong-Geol Shin, Yoonho Nam, Hui Zhang, Se Hong Oh, Jongho Lee
Whole brain g-ratio mapping using myelin water imaging (MWI) and neurite orientation dispersion and density imaging (NODDI). NeuroImage 182 (2018)
Marco Palombo, Daniel C. Alexander, Hui Zhang
A generative model of realistic brain cells with application to numerical simulation of diffusion-weighted MR signal. CoRR (2018)
Mark S. Graham, Ivana Drobnjak, Hui Zhang
A supervised learning approach for diffusion MRI quality control with minimal training data. NeuroImage 178 (2018)
Jesper L. R. Andersson, Mark S. Graham, Ivana Drobnjak, Hui Zhang, Nicola Filippini, Matteo Bastiani
Towards a comprehensive framework for movement and distortion correction of diffusion MR images: Within volume movement. NeuroImage 152 (2017)
Dafnis Batalle, Emer J. Hughes, Hui Zhang, Jacques-Donald Tournier, Nora Tusor, Paul Aljabar, Luqman Wali, Daniel C. Alexander, Joseph V. Hajnal, Chiara Nosarti, A. David Edwards, Serena J. Counsell
Early development of structural networks and the impact of prematurity on brain connectivity. NeuroImage 149 (2017)
Matteo Bastiani, Michiel Cottaar, Krikor Dikranian, Aurobrata Ghosh, Hui Zhang, Daniel C. Alexander, Tim E. J. Behrens, Saâd Jbabdi, Stamatios N. Sotiropoulos
Improved tractography using asymmetric fibre orientation distributions. NeuroImage 158 (2017)
Diliana Pecheva, Paul A. Yushkevich, Dafnis Batalle, Emer J. Hughes, Paul Aljabar, Julia Wurie, Joseph V. Hajnal, A. David Edwards, Daniel C. Alexander, Serena J. Counsell, Hui Zhang
A tract-specific approach to assessing white matter in preterm infants. NeuroImage 157 (2017)
Daniel C. Alexander, Darko Zikic, Aurobrata Ghosh, Ryutaro Tanno, Viktor Wottschel, Jiaying Zhang, Enrico Kaden, Tim B. Dyrby, Stamatios N. Sotiropoulos, Hui Zhang, Antonio Criminisi
Image quality transfer and applications in diffusion MRI. NeuroImage 152 (2017)
Mark S. Graham, Ivana Drobnjak, Hui Zhang
Realistic simulation of artefacts in diffusion MRI for validating post-processing correction techniques. NeuroImage 125 (2016)
Niall Colgan, Bernard Siow, James M. O'Callaghan, Ian F. Harrison, Jack A. Wells, Holly E. Holmes, Ozama Ismail, S. Richardson, Daniel C. Alexander, Emily C. Collins, Elizabeth M. C. Fisher, Ross A. Johnson, Adam J. Schwarz, Zeshan Ahmed, Michael J. O'Neill, Tracey K. Murray, Hui Zhang, Mark F. Lythgoe
Application of neurite orientation dispersion and density imaging (NODDI) to a tau pathology model of Alzheimer's disease. NeuroImage 125 (2016)
Maira Tariq, Torben Schneider, Daniel C. Alexander, Claudia A. M. Wheeler-Kingshott, Hui Zhang
Bingham-NODDI: Mapping anisotropic orientation dispersion of neurites using diffusion MRI. NeuroImage 133 (2016)
Francesco Grussu, Torben Schneider, Hui Zhang, Daniel C. Alexander, Claudia A. M. Wheeler-Kingshott
Neurite orientation dispersion and density imaging of the healthy cervical spinal cord in vivo. NeuroImage 111 (2015)
Alessandro Daducci, Erick Jorge Canales-Rodríguez, Hui Zhang, Tim B. Dyrby, Daniel C. Alexander, Jean-Philippe Thiran
Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data. NeuroImage 105 (2015)
Uran Ferizi, Torben Schneider, Thomas Witzel, Lawrence L. Wald, Hui Zhang, Claudia A. M. Wheeler-Kingshott, Daniel C. Alexander
White matter compartment models for in vivo diffusion MRI at 300 mT/m. NeuroImage 118 (2015)
Mark S. Graham, Ivana Drobnjak, Hui Zhang
A Simulation Framework for Quantitative Validation of Artefact Correction in Diffusion MRI. IPMI (2015)
Nicolas Kunz, Hui Zhang, Lana Vasung, Kieran O'Brien, Yaniv Assaf, François Lazeyras, Daniel C. Alexander, Petra S. Hüppi
Assessing white matter microstructure of the newborn with multi-shell diffusion MRI and biophysical compartment models. NeuroImage 96 (2014)
Maira Tariq, Torben Schneider, Daniel C. Alexander, Claudia A. M. Wheeler-Kingshott, Hui Zhang
In vivo Estimation of Dispersion Anisotropy of Neurites Using Diffusion MRI. MICCAI (3) (2014)
Daniel C. Alexander, Darko Zikic, Jiaying Zhang, Hui Zhang, Antonio Criminisi
Image Quality Transfer via Random Forest Regression: Applications in Diffusion MRI. MICCAI (3) (2014)
Nagesh Adluru, Hui Zhang, Do P. M. Tromp, Andrew L. Alexander
Effects of DTI spatial normalization on white matter tract reconstructions. Medical Imaging: Image Processing (2013)
Holger Roth, Jamie McClelland, Thomas Hampshire, Darren Boone, Yipeng Hu, Marc Modat, Hui Zhang, Sébastien Ourselin, Steve Halligan, David J. Hawkes
Registration of Prone and Supine CT Colonography Datasets with Differing Endoluminal Distension. Abdominal Imaging (2013)
Alexandra Tobisch, Peter F. Neher, Matthew C. Rowe, Klaus H. Maier-Hein, Hui Zhang
Model-Based Super-Resolution of Diffusion MRI. CDMRI/MMBC@MICCAI (2013)
Shiva Keihaninejad, Hui Zhang, Natalie S. Ryan, Ian B. Malone, Marc Modat, Manuel Jorge Cardoso, David M. Cash, Nick C. Fox, Sébastien Ourselin
An unbiased longitudinal analysis framework for tracking white matter changes using diffusion tensor imaging with application to Alzheimer's disease. NeuroImage 72 (2013)
Mark Lyksborg, Tim Bjørn Dyrby, Per Soelberg Sørensen, Morten Blinkenberg, Hartwig Roman Siebner, Daniel C. Alexander, Rasmus Larsen, Hui Zhang
Tract-oriented statistical group comparison of diffusion in sheet-like white matter. ISBI (2013)
Nagesh Adluru, Hui Zhang, Andrew S. Fox, Steven E. Shelton, Chad M. Ennis, Anne M. Bartosic, Jonathan A. Oler, Do P. M. Tromp, Elizabeth Zakszewski, James C. Gee, Ned H. Kalin, Andrew L. Alexander
A diffusion tensor brain template for Rhesus Macaques. NeuroImage 59 (1) (2012)
Hui Zhang, Torben Schneider, Claudia A. M. Wheeler-Kingshott, Daniel C. Alexander
NODDI: Practical in vivo neurite orientation dispersion and density imaging of the human brain. NeuroImage 61 (4) (2012)
Yi Wang, Aditya Gupta, Zhexing Liu, Hui Zhang, Maria L. Escolar, John H. Gilmore, Sylvain Gouttard, Pierre Fillard, Eric A. Maltbie, Guido Gerig, Martin Styner
DTI registration in atlas based fiber analysis of infantile Krabbe disease. NeuroImage 55 (4) (2011)
Hui Zhang, Tim B. Dyrby, Daniel C. Alexander
Axon Diameter Mapping in Crossing Fibers with Diffusion MRI. MICCAI (2) (2011)
Hui Zhang, Penny L. Hubbard, Geoffrey J. M. Parker, Daniel C. Alexander
Axon diameter mapping in the presence of orientation dispersion with diffusion MRI. NeuroImage 56 (3) (2011)
Gemma Louise Morgan, Hui Zhang, Brandon J. Whitcher, Daniel C. Alexander
A Bayesian framework for modelling the regional variation of white matter microstructure. MIUA (2011)
Hui Zhang, Daniel C. Alexander
Axon Diameter Mapping in the Presence of Orientation Dispersion with Diffusion MRI. MICCAI (1) (2010)
Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich
A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features. Medical Image Anal. 14 (5) (2010)
Eleftheria Panagiotaki, Matt G. Hall, Hui Zhang, Bernard Siow, Mark F. Lythgoe, Daniel C. Alexander
High-Fidelity Meshes from Tissue Samples for Diffusion MRI Simulations. MICCAI (2) (2010)
Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee
A Computational White Matter Atlas for Aging with Surface-Based Representation of Fasciculi. WBIR (2010)
Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee
Tensor-Based Morphometry of Fibrous Structures with Application to Human Brain White Matter. MICCAI (1) (2009)
Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich
A Tract-Specific Framework for White Matter Morphometry Combining Macroscopic and Microscopic Tract Features. MICCAI (1) (2009)
Alonso Ramirez-Manzanares, Hui Zhang, Mariano Rivera, James C. Gee
Robust regularization for the estimation of intra-voxel axon fiber orientations. CVPR Workshops (2008)
Hui Zhang, Paul A. Yushkevich, Tony J. Simon, James C. Gee
Surface-based modeling of white matter fasciculi with orientation encoding. ISBI (2008)
Jeffrey T. Duda, Brian B. Avants, Junghoon J. Kim, Hui Zhang, Sunil Patel, John Whyte, James C. Gee
Multivariate analysis of thalamo-cortical connectivity loss in TBI. CVPR Workshops (2008)
Philip A. Cook, Hui Zhang, Suyash P. Awate, James C. Gee
Atlas-guided probabilistic diffusion-tensor fiber tractography. ISBI (2008)
Suyash P. Awate, Hui Zhang, Tony J. Simon, James C. Gee
Multivariate segmentation of brain tissues by fusion of MRI and DTI data. ISBI (2008)
Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee
Structure-specific statistical mapping of white matter tracts. NeuroImage 41 (2) (2008)
Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee
Shape-Based Normalization of the Corpus Callosum for DTI Connectivity Analysis. IEEE Trans. Medical Imaging 26 (9) (2007)
Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee
Structure-Specific Statistical Mapping of White Matter Tracts using the Continuous Medial Representation. ICCV (2007)
Hui Zhang, Brian B. Avants, Paul A. Yushkevich, John H. Woo, Sumei Wang, L. F. McCluskey, L. B. Elman, Elias R. Melhem, James C. Gee
High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis. IEEE Trans. Medical Imaging 26 (11) (2007)
Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee
Unbiased White Matter Atlas Construction Using Diffusion Tensor Images. MICCAI (2) (2007)
Brian B. Avants, Jeffrey T. Duda, Hui Zhang, James C. Gee
Multivariate Normalization with Symmetric Diffeomorphisms for Multivariate Studies. MICCAI (1) (2007)
Suyash P. Awate, Hui Zhang, James C. Gee
A Fuzzy, Nonparametric Segmentation Framework for DTI and MRI Analysis: With Applications to DTI-Tract Extraction. IEEE Trans. Medical Imaging 26 (11) (2007)
Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee
Evaluation of Shape-Based Normalization in the Corpus Callosum for White Matter Connectivity Analysis. MICCAI (2) (2007)
Suyash P. Awate, Hui Zhang, James C. Gee
Fuzzy Nonparametric DTI Segmentation for Robust Cingulum-Tract Extraction. MICCAI (1) (2007)
Paul A. Yushkevich, John A. Detre, Dawn Mechanic-Hamilton, María A. Fernández-Seara, Kathy Z. Tang, Angela Hoang, Marc Korczykowski, Hui Zhang, James C. Gee
Hippocampus-specific fMRI group activation analysis using the continuous medial representation. NeuroImage 35 (4) (2007)
Paul A. Yushkevich, John A. Detre, Kathy Z. Tang, Angela Hoang, Dawn Mechanic-Hamilton, María A. Fernández-Seara, Marc Korczykowski, Hui Zhang, James C. Gee
Hippocampus-Specific fMRI Group Activation Analysis with Continuous M-Reps. MICCAI (2) (2006)
Hui Zhang, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee
Deformable registration of diffusion tensor MR images with explicit orientation optimization. Medical Image Anal. 10 (5) (2006)
Paul A. Yushkevich, Hui Zhang, James C. Gee
Continuous Medial Representation for Anatomical Structures. IEEE Trans. Medical Imaging 25 (12) (2006)
Hui Sun, Paul A. Yushkevich, Hui Zhang, James C. Gee, Tony J. Simon
Efficient Generation of Shape-Based Reference Frames for the Corpus Callosum for DTI-based Connectivity Analysis. CVPR Workshops (2006)
Paul A. Yushkevich, Brian B. Avants, Lydia Ng, Michael Hawrylycz, Pablo D. Burstein, Hui Zhang, James C. Gee
3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach. WBIR (2006)
Paul A. Yushkevich, Hui Zhang, James C. Gee
Parametric Medial Shape Representation in 3-D via the Poisson Partial Differential Equation with Non-linear Boundary Conditions. IPMI (2005)
Paul A. Yushkevich, Hui Zhang, James C. Gee
Statistical Modeling of Shape and Appearance Using the Continuous Medial Representation. MICCAI (2) (2005)
Hui Zhang, Paul A. Yushkevich, James C. Gee
Deformable Registration of Diffusion Tensor MR Images with Explicit Orientation Optimization. MICCAI (2005)
Philip A. Cook, Hui Zhang, Brian B. Avants, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee, Olga Ciccarelli, Alan J. Thompson
An Automated Approach to Connectivity-Based Partitioning of Brain Structures. MICCAI (2005)
Hui Zhang, Paul A. Yushkevich, James C. Gee
Towards Diffusion Profile Image Registration. ISBI (2004)
Hui Zhang, Paul A. Yushkevich, James C. Gee
Registration of Diffusion Tensor Images. CVPR (1) (2004)
Punam K. Saha, Hui Zhang, Jayaram K. Udupa, James C. Gee
Tensor scale-based image registration. Medical Imaging: Image Processing (2003)