Serena J. Counsell

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 17

Top Topics

Gaussian Process

Functional Connectivity

Top Venues

IEEE Trans. Medical Imaging

Medical Image Anal.

Publications

Yassine Taoudi-Benchekroun, Daan Christiaens, Irina Grigorescu, Oliver Gale-Grant, Andreas Schuh, Maximilian Pietsch, Andrew Chew, Nicholas Harper, Shona Falconer, Tanya Poppe, Emer J. Hughes, Jana Hutter, Anthony N. Price, Jacques-Donald Tournier, Lucilio Cordero-Grande, Serena J. Counsell, Daniel Rueckert, Tomoki Arichi, Joseph V. Hajnal, A. David Edwards, Maria Deprez, Dafnis Batalle
Predicting age and clinical risk from the neonatal connectome. NeuroImage 257 (2022)
Alena Uus, Mohammad-Usamah Ayub, Abi Gartner, Vanessa Kyriakopoulou, Maximilian Pietsch, Irina Grigorescu, Daan Christiaens, Jana Hutter, Lucilio Cordero-Grande, Anthony Price, Dafnis Batalle, Serena J. Counsell, Joseph V. Hajnal, A. David Edwards, Mary A. Rutherford, Maria Deprez
Segmentation of Periventricular White Matter in Neonatal Brain MRI: Analysis of Brain Maturation in Term and Preterm Cohorts. PIPPI@MICCAI (2022)
Ralica Dimitrova, Maximilian Pietsch, Judit Ciarrusta, Sean P. Fitzgibbon, Logan Z. J. Williams, Daan Christiaens, Lucilio Cordero-Grande, Dafnis Batalle, Antonios Makropoulos, Andreas Schuh, Anthony N. Price, Jana Hutter, Rui Pedro A. G. Teixeira, Emer J. Hughes, Andrew Chew, Shona Falconer, Olivia Carney, Alexia Egloff, Jacques-Donald Tournier, Grainne M. McAlonan, Mary A. Rutherford, Serena J. Counsell, Emma C. Robinson, Joseph V. Hajnal, Daniel Rueckert, A. David Edwards, Jonathan O'Muircheartaigh
Preterm birth alters the development of cortical microstructure and morphology at term-equivalent age. NeuroImage 243 (2021)
Russell Macleod, Serena J. Counsell, David W. Carmichael, Ralica Dimitrova, Maximilian Pietsch, A. David Edwards, Mary A. Rutherford, Jonathan O'Muircheartaigh
Detection of Injury and Automated Triage of Preterm Neonatal MRI Using Patch-Based Gaussian Processes. UNSURE/PIPPI@MICCAI (2021)
Maria Deprez, Anthony Price, Daan Christiaens, Georgia Lockwood Estrin, Lucilio Cordero-Grande, Jana Hutter, Alessandro Daducci, Jacques-Donald Tournier, Mary A. Rutherford, Serena J. Counsell, Meritxell Bach Cuadra, Joseph V. Hajnal
Higher Order Spherical Harmonics Reconstruction of Fetal Diffusion MRI With Intensity Correction. IEEE Trans. Medical Imaging 39 (4) (2020)
Russell Macleod, Jonathan O'Muircheartaigh, A. David Edwards, David W. Carmichael, Mary A. Rutherford, Serena J. Counsell
Automatic Detection of Neonatal Brain Injury on MRI. ASMUS/PIPPI@MICCAI (2020)
Maximilian Pietsch, Daan Christiaens, Jana Hutter, Lucilio Cordero-Grande, Anthony N. Price, Emer J. Hughes, A. David Edwards, Joseph V. Hajnal, Serena J. Counsell, Jacques-Donald Tournier
A framework for multi-component analysis of diffusion MRI data over the neonatal period. NeuroImage 186 (2019)
Dafnis Batalle, Jonathan O'Muircheartaigh, Antonios Makropoulos, Christopher J. Kelly, Ralica Dimitrova, Emer J. Hughes, Joseph V. Hajnal, Hui Zhang, Daniel C. Alexander, A. David Edwards, Serena J. Counsell
. NeuroImage 185 (2019)
Antonios Makropoulos, Serena J. Counsell, Daniel Rueckert
A review on automatic fetal and neonatal brain MRI segmentation. NeuroImage 170 (2018)
Antonios Makropoulos, Emma C. Robinson, Andreas Schuh, Robert Wright, Sean P. Fitzgibbon, Jelena Bozek, Serena J. Counsell, Johannes Steinweg, Katy Vecchiato, Jonathan Passerat-Palmbach, Gregor Lenz, Filippo Mortari, Tencho Tenev, Eugene P. Duff, Matteo Bastiani, Lucilio Cordero-Grande, Emer J. Hughes, Nora Tusor, Daniel Rueckert
The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction. NeuroImage 173 (2018)
Dafnis Batalle, Emer J. Hughes, Hui Zhang, Jacques-Donald Tournier, Nora Tusor, Paul Aljabar, Luqman Wali, Daniel C. Alexander, Joseph V. Hajnal, Chiara Nosarti, A. David Edwards, Serena J. Counsell
Early development of structural networks and the impact of prematurity on brain connectivity. NeuroImage 149 (2017)
Diliana Pecheva, Paul A. Yushkevich, Dafnis Batalle, Emer J. Hughes, Paul Aljabar, Julia Wurie, Joseph V. Hajnal, A. David Edwards, Daniel C. Alexander, Serena J. Counsell, Hui Zhang
A tract-specific approach to assessing white matter in preterm infants. NeuroImage 157 (2017)
Kristin Keunen, Serena J. Counsell, Manon J. N. L. Benders
The emergence of functional architecture during early brain development. NeuroImage 160 (2017)
Antonios Makropoulos, Paul Aljabar, Robert Wright, Britta Hüning, Nazakat Merchant, Tomoki Arichi, Nora Tusor, Joseph V. Hajnal, A. David Edwards, Serena J. Counsell, Daniel Rueckert
Regional growth and atlasing of the developing human brain. NeuroImage 125 (2016)
Gareth Ball, Paul Aljabar, Tomoki Arichi, Nora Tusor, D. Cox, Nazakat Merchant, P. Nongena, Joseph V. Hajnal, A. David Edwards, Serena J. Counsell
Machine-learning to characterise neonatal functional connectivity in the preterm brain. NeuroImage 124 (2016)
Ivana Isgum, Manon J. N. L. Benders, Brian B. Avants, Manuel Jorge Cardoso, Serena J. Counsell, Elda Fischi Gomez, Laura Gui, Petra S. Hüppi, Karina J. Kersbergen, Antonios Makropoulos, Andrew Melbourne, Pim Moeskops, Christian P. Mol, Maria Kuklisova-Murgasova, Daniel Rueckert, Julia A. Schnabel, Vedran Srhoj-Egekher, Jue Wu, Siying Wang, Linda S. de Vries, Max A. Viergever
Evaluation of automatic neonatal brain segmentation algorithms: The NeoBrainS12 challenge. Medical Image Anal. 20 (1) (2015)
Veronika A. M. Zimmer, Ben Glocker, Paul Aljabar, Serena J. Counsell, Mary A. Rutherford, A. David Edwards, Joseph V. Hajnal, Miguel Ángel González Ballester, Daniel Rueckert, Gemma Piella
Learning and Combining Image Similarities for Neonatal Brain Population Studies. MLMI (2015)
Antonios Makropoulos, Ioannis S. Gousias, Christian Ledig, Paul Aljabar, Ahmed Serag, Joseph V. Hajnal, A. David Edwards, Serena J. Counsell, Daniel Rueckert
Automatic Whole Brain MRI Segmentation of the Developing Neonatal Brain. IEEE Trans. Medical Imaging 33 (9) (2014)
Andreas Schuh, Maria Murgasova, Antonios Makropoulos, Christian Ledig, Serena J. Counsell, Joseph V. Hajnal, Paul Aljabar, Daniel Rueckert
Construction of a 4D Brain Atlas and Growth Model Using Diffeomorphic Registration. STIA (2014)
Markus Schirmer, Gareth Ball, Serena J. Counsell, A. David Edwards, Daniel Rueckert, Joseph V. Hajnal, Paul Aljabar
Normalisation of Neonatal Brain Network Measures Using Stochastic Approaches. MICCAI (1) (2013)
Ahmed Serag, Paul Aljabar, Serena J. Counsell, James P. Boardman, Joseph V. Hajnal, Daniel Rueckert
LISA: Longitudinal image registration via spatio-temporal atlases. ISBI (2012)
Emer J. Hughes, Jacqueline Bond, Patricia Svrckova, Antonios Makropoulos, Gareth Ball, David J. Sharp, A. David Edwards, Joseph V. Hajnal, Serena J. Counsell
Regional changes in thalamic shape and volume with increasing age. NeuroImage 63 (3) (2012)
Ahmed Serag, Paul Aljabar, Gareth Ball, Serena J. Counsell, James P. Boardman, Mary A. Rutherford, A. David Edwards, Joseph V. Hajnal, Daniel Rueckert
Construction of a consistent high-definition spatio-temporal atlas of the developing brain using adaptive kernel regression. NeuroImage 59 (3) (2012)
Tomoki Arichi, Gianlorenzo Fagiolo, Marta Varela, Alejandro Melendez-Calderon, Alessandro Allievi, Nazakat Merchant, Nora Tusor, Serena J. Counsell, Etienne Burdet, Christian F. Beckmann, A. David Edwards
Development of BOLD signal hemodynamic responses in the human brain. NeuroImage 63 (2) (2012)
Ahmed Serag, Paul Aljabar, Gareth Ball, Serena J. Counsell, James P. Boardman, Mary A. Rutherford, A. David Edwards, Joseph V. Hajnal, Daniel Rueckert
Erratum to Construction of a consistent high-definition spatio-temporal atlas of the developing brain using adaptive kernel regression [NeuroImage 59/3(2012) 2255-2265]. NeuroImage 63 (2) (2012)
Ioannis S. Gousias, A. David Edwards, Mary A. Rutherford, Serena J. Counsell, Joseph V. Hajnal, Daniel Rueckert, Alexander Hammers
Magnetic resonance imaging of the newborn brain: Manual segmentation of labelled atlases in term-born and preterm infants. NeuroImage 62 (3) (2012)
Ahmed Serag, Ioannis S. Gousias, Antonios Makropoulos, Paul Aljabar, Joseph V. Hajnal, James P. Boardman, Serena J. Counsell, Daniel Rueckert
Unsupervised Learning of Shape Complexity: Application to Brain Development. STIA (2012)
Ahmed Serag, Paul Aljabar, Serena J. Counsell, James P. Boardman, Joseph V. Hajnal, Daniel Rueckert
A Four-dimensional Atlas of Neonatal Brain MRI. MIUA (2011)
Maria Kuklisova-Murgasova, Paul Aljabar, Latha Srinivasan, Serena J. Counsell, Valentina Doria, Ahmed Serag, Ioannis S. Gousias, James P. Boardman, Mary A. Rutherford, A. David Edwards, Joseph V. Hajnal, Daniel Rueckert
A dynamic 4D probabilistic atlas of the developing brain. NeuroImage 54 (4) (2011)
Ahmed Serag, Paul Aljabar, Serena J. Counsell, James P. Boardman, Joseph V. Hajnal, Daniel Rueckert
Construction of a 4D atlas of the developing brain using non-rigid registration. ISBI (2011)
Ahmed Serag, Paul Aljabar, Serena J. Counsell, James P. Boardman, Joseph V. Hajnal, Daniel Rueckert
Tracking developmental changes in subcortical structures of the preterm brain using multi-modal MRI. ISBI (2011)
Paul Aljabar, Robin Wolz, Latha Srinivasan, Serena J. Counsell, Mary A. Rutherford, A. David Edwards, Joseph V. Hajnal, Daniel Rueckert
A Combined Manifold Learning Analysis of Shape and Appearance to Characterize Neonatal Brain Development. IEEE Trans. Medical Imaging 30 (12) (2011)
Paul Aljabar, Robin Wolz, Latha Srinivasan, Serena J. Counsell, James P. Boardman, Maria Murgasova, Valentina Doria, Mary A. Rutherford, A. David Edwards, Joseph V. Hajnal
Combining Morphological Information in a Manifold Learning Framework: Application to Neonatal MRI. MICCAI (3) (2010)
Tomoki Arichi, A. Moraux, A. Melendez, Valentina Doria, M. Groppo, Nazakat Merchant, S. Combs, Etienne Burdet, David J. Larkman, Serena J. Counsell, Christian F. Beckmann, A. David Edwards
Somatosensory cortical activation identified by functional MRI in preterm and term infants. NeuroImage 49 (3) (2010)
Gareth Ball, Serena J. Counsell, Mustafa Anjari, Nazakat Merchant, Tomoki Arichi, Valentina Doria, Mary A. Rutherford, A. David Edwards, Daniel Rueckert, James P. Boardman
An optimised tract-based spatial statistics protocol for neonates: Applications to prematurity and chronic lung disease. NeuroImage 53 (1) (2010)
James P. Boardman, C. Craven, S. Valappil, Serena J. Counsell, Leigh Dyet, Daniel Rueckert, Paul Aljabar, Mary A. Rutherford, A. T. M. Chew, Joanna M. Allsop, Frances M. Cowan, A. David Edwards
A common neonatal image phenotype predicts adverse neurodevelopmental outcome in children born preterm. NeuroImage 52 (2) (2010)
Mustafa Anjari, Latha Srinivasan, Joanna M. Allsop, Joseph V. Hajnal, Mary A. Rutherford, A. David Edwards, Serena J. Counsell
Diffusion tensor imaging with tract-based spatial statistics reveals local white matter abnormalities in preterm infants. NeuroImage 35 (3) (2007)
Serena J. Counsell, Leigh Dyet, David J. Larkman, Rita Gouveia Nunes, James P. Boardman, Joanna M. Allsop, Julie Fitzpatrick, Latha Srinivasan, Frances M. Cowan, Joseph V. Hajnal, Mary A. Rutherford, A. David Edwards
Thalamo-cortical connectivity in children born preterm mapped using probabilistic magnetic resonance tractography. NeuroImage 34 (3) (2007)
Shuzhou Jiang, Hui Xue, Serena J. Counsell, Mustafa Anjari, Joanna M. Allsop, Mary A. Rutherford, Daniel Rueckert, Joseph V. Hajnal
In-utero Three Dimension High Resolution Fetal Brain Diffusion Tensor Imaging. MICCAI (1) (2007)
Carlos E. Thomaz, James P. Boardman, Serena J. Counsell, Derek L. G. Hill, Joseph V. Hajnal, A. David Edwards, Mary A. Rutherford, Duncan Fyfe Gillies, Daniel Rueckert
A multivariate statistical analysis of the developing human brain in preterm infants. Image Vis. Comput. 25 (6) (2007)
Kanwal K. Bhatia, Paul Aljabar, James P. Boardman, Latha Srinivasan, Maria Murgasova, Serena J. Counsell, Mary A. Rutherford, Joseph V. Hajnal, A. David Edwards, Daniel Rueckert
Groupwise Combined Segmentation and Registration for Atlas Construction. MICCAI (1) (2007)
James P. Boardman, Serena J. Counsell, Daniel Rueckert, Olga Kapellou, Kanwal K. Bhatia, Paul Aljabar, Joseph V. Hajnal, Joanna M. Allsop, Mary A. Rutherford, A. David Edwards
Abnormal deep grey matter development following preterm birth detected using deformation-based morphometry. NeuroImage 32 (1) (2006)
Carlos E. Thomaz, James P. Boardman, Serena J. Counsell, Derek L. G. Hill, Joseph V. Hajnal, A. David Edwards, Mary A. Rutherford, Duncan Fyfe Gillies, Daniel Rueckert
A whole brain morphometric analysis of changes associated with pre-term birth. Medical Imaging: Image Processing (2006)
Christina Malamateniou, Serena J. Counsell, Joanna M. Allsop, Julie Fitzpatrick, Latha Srinivasan, Frances M. Cowan, Joseph V. Hajnal, Mary A. Rutherford
The effect of preterm birth on neonatal cerebral vasculature studied with magnetic resonance angiography at 3 Tesla. NeuroImage 32 (3) (2006)
James P. Boardman, Kanwal K. Bhatia, Serena J. Counsell, Joanna M. Allsop, Olga Kapellou, Mary A. Rutherford, A. David Edwards, Joseph V. Hajnal, Daniel Rueckert
An Evaluation of Deformation-Based Morphometry Applied to the Developing Human Brain and Detection of Volumetric Changes Associated with Preterm Birth. MICCAI (1) (2003)