Mark Jenkinson

ORCID

Publication Activity (10 Years)

Years Active: 1998-2024
Publications (10 Years): 55

Top Venues

NeuroImage

CoRR

Medical Image Anal.

Frontiers Neuroinformatics

Publications

Madeleine K. Wyburd, Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
Anatomically plausible segmentations: Explicitly preserving topology through prior deformations. Medical Image Anal. 97 (2024)
Minyan Zeng, Yutong Xie, Minh-Son To, Lauren Oakden-Rayner, Luke Whitbread, Stephen Bacchi, Alix Bird, Luke Smith, Rebecca Scroop, Timothy Kleinig, Jim Jannes, Lyle J. Palmer, Mark Jenkinson
Improved Flexibility and Interpretability of Large Vessel Stroke Prognostication Using Image Synthesis and Multi-task Learning. MICCAI (5) (2023)
Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
SFHarmony: Source Free Domain Adaptation for Distributed Neuroimaging Analysis. ICCV (2023)
Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
SFHarmony: Source Free Domain Adaptation for Distributed Neuroimaging Analysis. CoRR (2023)
Vaanathi Sundaresan, Christoph Arthofer, Giovanna Zamboni, Andrew G. Murchison, Robert A. Dineen, Peter M. Rothwell, Dorothee P. Auer, Chaoyue Wang, Karla L. Miller, Benjamin C. Tendler, Fidel Alfaro-Almagro, Stamatios N. Sotiropoulos, Nikola Sprigg, Ludovica Griffanti, Mark Jenkinson
Automated detection of cerebral microbleeds on MR images using knowledge distillation framework. Frontiers Neuroinformatics 17 (2023)
Jelena Bozek, Ludovica Griffanti, Stephan Lau, Mark Jenkinson
Normative models for neuroimaging markers: Impact of model selection, sample size and evaluation criteria. NeuroImage 268 (2023)
István N. Huszár, Menuka Pallebage-Gamarallage, Sarah Bangerter-Christensen, Hannah Brooks, Sean P. Fitzgibbon, Sean Foxley, Marlies Hiemstra, Amy F. D. Howard, Saâd Jbabdi, Daniel Z. L. Kor, Anna Leonte, Jeroen Mollink, Adele Smart, Benjamin C. Tendler, Martin R. Turner, Olaf Ansorge, Karla L. Miller, Mark Jenkinson
Tensor image registration library: Deformable registration of stand-alone histology images to whole-brain post-mortem MRI data. NeuroImage 265 (2023)
Georgia Kenyon, Stephan Lau, Michael A. Chappell, Mark Jenkinson
Segmentation method for cerebral blood vessels from MRA using hysteresis. CoRR (2023)
Gerard Snaauw, Michele Sasdelli, Gabriel Maicas, Stephan Lau, Johan Verjans, Mark Jenkinson, Gustavo Carneiro
Mutual Information Neural Estimation for Unsupervised Multi-Modal Registration of Brain Images. EMBC (2022)
Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
FedHarmony: Unlearning Scanner Bias with Distributed Data. MICCAI (8) (2022)
Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
STAMP: Simultaneous Training and Model Pruning for low data regimes in medical image segmentation. Medical Image Anal. 81 (2022)
Laurence Vass, M. J. Moore, T. Hanayik, G. Mair, S. T. Pendlebury, Nele Demeyere, Mark Jenkinson
A Comparison of Cranial Cavity Extraction Tools for Non-contrast Enhanced CT Scans in Acute Stroke Patients. Neuroinformatics 20 (3) (2022)
Luke Whitbread, Mark Jenkinson
Uncertainty Categories in Medical Image Segmentation: A Study of Source-Related Diversity. UNSURE@MICCAI (2022)
Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
FedHarmony: Unlearning Scanner Bias with Distributed Data. CoRR (2022)
Vaanathi Sundaresan, Nicola K. Dinsdale, Mark Jenkinson, Ludovica Griffanti
Omni-Supervised Domain Adversarial Training for White Matter Hyperintensity Segmentation in the UK Biobank. ISBI (2022)
Luke Whitbread, Mark Jenkinson
How certain are your uncertainties? CoRR (2022)
Linde S. Hesse, Moska Aliasi, Felipe Moser, Monique C. Haak, Weidi Xie, Mark Jenkinson, Ana I. L. Namburete
Subcortical segmentation of the fetal brain in 3D ultrasound using deep learning. NeuroImage 254 (2022)
Gerard Snaauw, Michele Sasdelli, Gabriel Maicas, Stephan Lau, Johan Verjans, Mark Jenkinson, Gustavo Carneiro
Mutual information neural estimation for unsupervised multi-modal registration of brain images. CoRR (2022)
Madeleine K. Wyburd, Nicola K. Dinsdale, Ana I. L. Namburete, Mark Jenkinson
TEDS-Net: Enforcing Diffeomorphisms in Spatial Transformers to Guarantee Topology Preservation in Segmentations. CoRR (2021)
Madeleine K. Wyburd, Linde S. Hesse, Moska Aliasi, Mark Jenkinson, Aris T. Papageorghiou, Monique C. Haak, Ana I. L. Namburete
Assessment of Regional Cortical Development Through Fissure Based Gestational Age Estimation in 3D Fetal Ultrasound. UNSURE/PIPPI@MICCAI (2021)
Vaanathi Sundaresan, Christoph Arthofer, Giovanna Zamboni, Robert A. Dineen, Peter M. Rothwell, Stamatios N. Sotiropoulos, Dorothee P. Auer, Daniel J. Tozer, Hugh S. Markus, Karla L. Miller, Iulius Dragonu, Nikola Sprigg, Fidel Alfaro-Almagro, Mark Jenkinson, Ludovica Griffanti
Automated Detection of Candidate Subjects With Cerebral Microbleeds Using Machine Learning. Frontiers Neuroinformatics 15 (2021)
Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
Deep learning-based unlearning of dataset bias for MRI harmonisation and confound removal. NeuroImage 228 (2021)
Vaanathi Sundaresan, Ludovica Griffanti, Mark Jenkinson
Brain tumour segmentation using a triplanar ensemble of U-Nets. CoRR (2021)
Minh-Son To, Ian G. Sarno, Chee Chong, Mark Jenkinson, Gustavo Carneiro
Self-Supervised Lesion Change Detection and Localisation in Longitudinal Multiple Sclerosis Brain Imaging. MICCAI (7) (2021)
Vaanathi Sundaresan, Giovanna Zamboni, Nicola K. Dinsdale, Peter M. Rothwell, Ludovica Griffanti, Mark Jenkinson
Comparison of domain adaptation techniques for white matter hyperintensity segmentation in brain MR images. Medical Image Anal. 74 (2021)
Nicola K. Dinsdale, Emma Bluemke, Stephen M. Smith, Zobair Arya, Diego Vidaurre, Mark Jenkinson, Ana I. L. Namburete
Learning patterns of the ageing brain in MRI using deep convolutional networks. NeuroImage 224 (2021)
Vaanathi Sundaresan, Giovanna Zamboni, Peter M. Rothwell, Mark Jenkinson, Ludovica Griffanti
Triplanar ensemble U-Net model for white matter hyperintensities segmentation on MR images. Medical Image Anal. 73 (2021)
Minh-Son To, Ian G. Sarno, Chee Chong, Mark Jenkinson, Gustavo Carneiro
Self-supervised Lesion Change Detection and Localisation in Longitudinal Multiple Sclerosis Brain Imaging. CoRR (2021)
Madeleine K. Wyburd, Nicola K. Dinsdale, Ana I. L. Namburete, Mark Jenkinson
TEDS-Net: Enforcing Diffeomorphisms in Spatial Transformers to Guarantee Topology Preservation in Segmentations. MICCAI (1) (2021)
Nicola K. Dinsdale, Emma Bluemke, Vaanathi Sundaresan, Mark Jenkinson, Stephen M. Smith, Ana I. L. Namburete
Challenges for machine learning in clinical translation of big data imaging studies. CoRR (2021)
Valentina Bordin, Ilaria Bertani, Irene Mattioli, Vaanathi Sundaresan, Paul McCarthy, Sana Suri, Eniko Zsoldos, Nicola Filippini, Abda Mahmood, Luca Melazzini, Maria Marcella Laganà, Giovanna Zamboni, Archana Singh-Manoux, Mika Kivimäki, Klaus P. Ebmeier, Giuseppe Baselli, Mark Jenkinson, Clare E. Mackay, Eugene P. Duff, Ludovica Griffanti
Integrating large-scale neuroimaging research datasets: Harmonisation of white matter hyperintensity measurements across Whitehall and UK Biobank datasets. NeuroImage 237 (2021)
Jorge Corral Acero, Vaanathi Sundaresan, Nicola K. Dinsdale, Vicente Grau, Mark Jenkinson
A 2-Step Deep Learning Method with Domain Adaptation for Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Magnetic Resonance Segmentation. M&Ms and EMIDEC/STACOM@MICCAI (2020)
Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
Unlearning Scanner Bias for MRI Harmonisation in Medical Image Segmentation. MIUA (2020)
Madeleine K. Wyburd, Mark Jenkinson, Ana I. L. Namburete
Cortical Plate Segmentation Using CNNs in 3D Fetal Ultrasound. MIUA (2020)
Sean P. Fitzgibbon, Samuel J. Harrison, Mark Jenkinson, Luke Baxter, Emma C. Robinson, Matteo Bastiani, Jelena Bozek, Vyacheslav Karolis, Lucilio Cordero-Grande, Anthony N. Price, Emer J. Hughes, Antonios Makropoulos, Jonathan Passerat-Palmbach, Andreas Schuh, Jianliang Gao, Seyedeh-Rezvan Farahibozorg, Jonathan O'Muircheartaigh, Judit Ciarrusta, Jesper Andersson
The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants. NeuroImage 223 (2020)
Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
Unlearning Scanner Bias for MRI Harmonisation. MICCAI (2) (2020)
Vaanathi Sundaresan, Ludovica Griffanti, Mark Jenkinson
Brain Tumour Segmentation Using a Triplanar Ensemble of U-Nets on MR Images. BrainLes@MICCAI (1) (2020)
Vaanathi Sundaresan, Ludovica Griffanti, Petya Kindalova, Fidel Alfaro-Almagro, Giovanna Zamboni, Peter M. Rothwell, Thomas E. Nichols, Mark Jenkinson
Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference. NeuroImage 185 (2019)
Vaanathi Sundaresan, Giovanna Zamboni, Campbell Le Heron, Peter M. Rothwell, Masud Husain, Marco Battaglini, Nicola De Stefano, Mark Jenkinson, Ludovica Griffanti
Automated lesion segmentation with BIANCA: Impact of population-level features, classification algorithm and locally adaptive thresholding. NeuroImage 202 (2019)
Antoine Saillant, Ian Armstrong, Vijay P. Shah, Sven Zuehlsdorff, Charles Hayden, Jérôme Declerck, Kimberley Saint, Matthew Memmott, Mark Jenkinson, Michael A. Chappell
Assessing Reliability of Myocardial Blood Flow After Motion Correction With Dynamic PET Using a Bayesian Framework. IEEE Trans. Medical Imaging 38 (5) (2019)
Luke Baxter, Sean P. Fitzgibbon, Fiona Moultrie, Sezgi Goksan, Mark Jenkinson, Stephen M. Smith, Jesper L. R. Andersson, Eugene P. Duff, Rebeccah Slater
Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants. NeuroImage 186 (2019)
Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
Spatial Warping Network for 3D Segmentation of the Hippocampus in MR Images. MICCAI (3) (2019)
Ludovica Griffanti, Mark Jenkinson, Sana Suri, Eniko Zsoldos, Abda Mahmood, Nicola Filippini, Claire E. Sexton, Anya Topiwala, Charlotte Allan, Mika Kivimäki, Archana Singh-Manoux, Klaus P. Ebmeier, Clare E. Mackay, Giovanna Zamboni
Classification and characterization of periventricular and deep white matter hyperintensities on MRI: A study in older adults. NeuroImage 170 (2018)
Fidel Alfaro-Almagro, Mark Jenkinson, Neal K. Bangerter, Jesper L. R. Andersson, Ludovica Griffanti, Gwenaëlle Douaud, Stamatios N. Sotiropoulos, Saâd Jbabdi, Moisés Hernández-Fernández, Emmanuel Vallée, Diego Vidaurre, Matthew A. Webster, Paul McCarthy, Christopher Rorden, Alessandro Daducci, Daniel C. Alexander, Hui Zhang, Iulius Dragonu, Paul M. Matthews, Karla L. Miller, Stephen M. Smith
Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank. NeuroImage 166 (2018)
Jeroen Mollink, Michiel Kleinnijenhuis, Anne-Marie van Cappellen van Walsum, Stamatios N. Sotiropoulos, Michiel Cottaar, Christopher Mirfin, Mattias P. Heinrich, Mark Jenkinson, Menuka Pallebage-Gamarallage, Olaf Ansorge, Saâd Jbabdi, Karla L. Miller
Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging. NeuroImage 157 (2017)
Krzysztof J. Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capota, M. Mallar Chakravarty, Nathan William Churchill, Alexander Li Cohen, R. Cameron Craddock, Gabriel A. Devenyi, Anders Eklund, Oscar Esteban, Guillaume Flandin, Satrajit S. Ghosh, J. Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher John Steele, Pierre-Olivier Quirion, Robert E. Smith, Stephen C. Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, Russell A. Poldrack
BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLoS Comput. Biol. 13 (3) (2017)
Falk Eippert, Yazhuo Kong, Mark Jenkinson, Irene Tracey, Jonathan C. W. Brooks
Denoising spinal cord fMRI data: Approaches to acquisition and analysis. NeuroImage 154 (2017)
Eelke Visser, Max C. Keuken, Birte U. Forstmann, Mark Jenkinson
Automated segmentation of the substantia nigra, subthalamic nucleus and red nucleus in 7 T data at young and old age. NeuroImage 139 (2016)
Matthew F. Glasser, Timothy S. Coalson, Emma C. Robinson, Carl D. Hacker, John W. Harwell, Essa Yacoub, Kamil Ugurbil, Jesper L. R. Andersson, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith, David C. Van Essen
A multi-modal parcellation of human cerebral cortex. Nat. 536 (7615) (2016)
Zobair Arya, Ludovica Griffanti, Clare E. Mackay, Mark Jenkinson
Iterative Dual LDA: A Novel Classification Algorithm for Resting State fMRI. MLMI@MICCAI (2016)
Ludovica Griffanti, Giovanna Zamboni, Aamira Khan, Linxin Li, Guendalina Bonifacio, Vaanathi Sundaresan, Ursula G. Schulz, Wilhelm Kuker, Marco Battaglini, Peter M. Rothwell, Mark Jenkinson
BIANCA (Brain Intensity AbNormality Classification Algorithm): A new tool for automated segmentation of white matter hyperintensities. NeuroImage 141 (2016)
Ludovica Griffanti, Michal Rolinski, Konrad Szewczyk-Krolikowski, Ricarda A. Menke, Nicola Filippini, Giovanna Zamboni, Mark Jenkinson, Michele T. M. Hu, Clare E. Mackay
Challenges in the reproducibility of clinical studies with resting state fMRI: An example in early Parkinson's disease. NeuroImage 124 (2016)
Jelena Bozek, Sean P. Fitzgibbon, Robert Wright, Daniel Rueckert, Mark Jenkinson, Emma C. Robinson
Construction of a neonatal cortical surface atlas using multimodal surface matching. ISBI (2016)
Eelke Visser, Max C. Keuken, Gwenaëlle Douaud, Véronique Gaura, Anne-Catherine Bachoud-Lévi, Philippe Remy, Birte U. Forstmann, Mark Jenkinson
Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool. NeuroImage 125 (2016)
Adam G. Thomas, Andrea Dennis, Nancy B. Rawlings, Charlotte J. Stagg, Lucy Matthews, Martyn Morris, Shannon H. Kolind, Sean Foxley, Mark Jenkinson, Thomas E. Nichols, Helen Dawes, Peter A. Bandettini, Heidi Johansen-Berg
Multi-modal characterization of rapid anterior hippocampal volume increase associated with aerobic exercise. NeuroImage 131 (2016)
Olivia K. Faull, Mark Jenkinson, Stuart Clare, Kyle T. S. Pattinson
Functional subdivision of the human periaqueductal grey in respiratory control using 7 tesla fMRI. NeuroImage 113 (2015)
Samuel J. Harrison, Mark W. Woolrich, Emma C. Robinson, Matthew F. Glasser, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith
Large-scale Probabilistic Functional Modes from resting state fMRI. NeuroImage 109 (2015)
Clare B. Poynton, Mark Jenkinson, Elfar Adalsteinsson, Edith V. Sullivan, Adolf Pfefferbaum, William M. Wells III
Quantitative Susceptibility Mapping by Inversion of a Perturbation Field Model: Correlation With Brain Iron in Normal Aging. IEEE Trans. Medical Imaging 34 (1) (2015)
Cassandra Sampaio-Baptista, Jan Scholz, Mark Jenkinson, Adam G. Thomas, Nicola Filippini, Gabrielle Smit, Gwenaëlle Douaud, Heidi Johansen-Berg
Gray matter volume is associated with rate of subsequent skill learning after a long term training intervention. NeuroImage 96 (2014)
Maarten Mennes, Mark Jenkinson, Romain Valabrègue, Jan K. Buitelaar, Christian F. Beckmann, Stephen M. Smith
Optimizing full-brain coverage in human brain MRI through population distributions of brain size. NeuroImage 98 (2014)
Rob H. N. Tijssen, Mark Jenkinson, Jonathan C. W. Brooks, Peter Jezzard, Karla L. Miller
Optimizing RetroICor and RetroKCor corrections for multi-shot 3D FMRI acquisitions. NeuroImage 84 (2014)
Rouhollah O. Abdollahi, Hauke Kolster, Matthew F. Glasser, Emma C. Robinson, Timothy S. Coalson, Donna L. Dierker, Mark Jenkinson, David C. Van Essen, Guy A. Orban
Correspondences between retinotopic areas and myelin maps in human visual cortex. NeuroImage 99 (2014)
Emma C. Robinson, Saâd Jbabdi, Matthew F. Glasser, Jesper L. R. Andersson, Gregory C. Burgess, Michael P. Harms, Stephen M. Smith, David C. Van Essen, Mark Jenkinson
MSM: A new flexible framework for Multimodal Surface Matching. NeuroImage 100 (2014)
Mattias P. Heinrich, Mark Jenkinson, Bartlomiej W. Papiez, Fergus V. Gleeson, Michael Brady, Julia A. Schnabel
Edge- and Detail-Preserving Sparse Image Representations for Deformable Registration of Chest MRI and CT Volumes. IPMI (2013)
Daniel S. Marcus, Michael P. Harms, Abraham Z. Snyder, Mark Jenkinson, J. Anthony Wilson, Matthew F. Glasser, Deanna M. Barch, Kevin A. Archie, Gregory C. Burgess, Mohana Ramaratnam, Michael R. Hodge, William Horton, Rick Herrick, Timothy R. Olsen, Michael McKay, Matthew House, Michael Hileman, Erin Reid, John W. Harwell, Timothy S. Coalson, Jon Schindler, Jennifer Stine Elam, Sandra W. Curtiss, David C. Van Essen
Human Connectome Project informatics: Quality control, database services, and data visualization. NeuroImage 80 (2013)
Emma C. Robinson, Saâd Jbabdi, Jesper L. R. Andersson, Stephen M. Smith, Matthew F. Glasser, David C. Van Essen, Gregory C. Burgess, Michael P. Harms, Deanna M. Barch, Mark Jenkinson
Multimodal Surface Matching: Fast and Generalisable Cortical Registration Using Discrete Optimisation. IPMI (2013)
Matthew F. Glasser, Stamatios N. Sotiropoulos, J. Anthony Wilson, Timothy S. Coalson, Bruce Fischl, Jesper L. R. Andersson, Junqian Xu, Saâd Jbabdi, Matthew A. Webster, Jonathan R. Polimeni, David C. Van Essen, Mark Jenkinson
The minimal preprocessing pipelines for the Human Connectome Project. NeuroImage 80 (2013)
Stamatios N. Sotiropoulos, Saâd Jbabdi, Junqian Xu, Jesper L. R. Andersson, Steen Moeller, Edward J. Auerbach, Matthew F. Glasser, Moisés Hernández, Guillermo Sapiro, Mark Jenkinson, David A. Feinberg, Essa Yacoub, Christophe Lenglet, David C. Van Essen, Kamil Ugurbil, Timothy Edward John Behrens
Advances in diffusion MRI acquisition and processing in the Human Connectome Project. NeuroImage 80 (2013)
Mattias P. Heinrich, Mark Jenkinson, Michael Brady, Julia A. Schnabel
MRF-Based Deformable Registration and Ventilation Estimation of Lung CT. IEEE Trans. Medical Imaging 32 (7) (2013)
Manav Bhushan, Julia A. Schnabel, Michael A. Chappell, Fergus Gleeson, Mark Anderson, Jamie Franklin, Michael Brady, Mark Jenkinson
The Impact of Heterogeneity and Uncertainty on Prediction of Response to Therapy Using Dynamic MRI Data. MICCAI (1) (2013)
Mattias P. Heinrich, Mark Jenkinson, Bartlomiej W. Papiez, Michael Brady, Julia A. Schnabel
Towards Realtime Multimodal Fusion for Image-Guided Interventions Using Self-similarities. MICCAI (1) (2013)
Yazhuo Kong, Mark Jenkinson, Jesper L. R. Andersson, Irene Tracey, Jonathan C. W. Brooks
Assessment of physiological noise modelling methods for functional imaging of the spinal cord. NeuroImage 60 (2) (2012)
Mattias P. Heinrich, Mark Jenkinson, Michael Brady, Julia A. Schnabel
Textural mutual information based on cluster trees for multimodal deformable registration. ISBI (2012)
Veronica Popescu, Marco Battaglini, W. S. Hoogstrate, Sander C. J. Verfaillie, I. C. Sluimer, Ronald A. van Schijndel, Bob W. van Dijk, Keith S. Cover, Dirk L. Knol, Mark Jenkinson, Frederik Barkhof, Nicola De Stefano, Hugo Vrenken
Optimizing parameter choice for FSL-Brain Extraction Tool (BET) on 3D T1 images in multiple sclerosis. NeuroImage 61 (4) (2012)
Mattias P. Heinrich, Mark Jenkinson, Manav Bhushan, Tahreema N. Matin, Fergus Gleeson, Michael Brady, Julia A. Schnabel
MIND: Modality independent neighbourhood descriptor for multi-modal deformable registration. Medical Image Anal. 16 (7) (2012)
Mattias P. Heinrich, Mark Jenkinson, Michael Brady, Julia A. Schnabel
Globally Optimal Deformable Registration on a Minimum Spanning Tree Using Dense Displacement Sampling. MICCAI (3) (2012)
Mark Jenkinson, Christian F. Beckmann, Timothy Edward John Behrens, Mark William Woolrich, Stephen M. Smith
FSL. NeuroImage 62 (2) (2012)
Mattias P. Heinrich, Mark Jenkinson, J. Michael Brady, Julia A. Schnabel
Non-rigid image registration through efficient discrete optimization. MIUA (2011)
Andri C. Tziortzi, Graham E. Searle, Sofia Tzimopoulou, Cristian A. Salinas, John D. Beaver, Mark Jenkinson, Marc Laruelle, Eugenii A. Rabiner, Roger N. Gunn
C]-(+)-PHNO: Dissection of D3 signal and anatomy. NeuroImage 54 (1) (2011)
Brian Patenaude, Stephen M. Smith, David N. Kennedy, Mark Jenkinson
A Bayesian model of shape and appearance for subcortical brain segmentation. NeuroImage 56 (3) (2011)
Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim
Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Medical Imaging 30 (11) (2011)
Karla L. Miller, Charlotte J. Stagg, Gwenaëlle Douaud, Saâd Jbabdi, Stephen M. Smith, Timothy Edward John Behrens, Mark Jenkinson, Steven A. Chance, Margaret M. Esiri, Natalie L. Voets, Ned Jenkinson, Tipu Z. Aziz, Martin R. Turner, Heidi Johansen-Berg, Jennifer A. McNab
Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner. NeuroImage 57 (1) (2011)
Mattias P. Heinrich, Mark Jenkinson, Manav Bhushan, Tahreema N. Matin, Fergus Gleeson, J. Michael Brady, Julia A. Schnabel
Non-local Shape Descriptor: A New Similarity Metric for Deformable Multi-modal Registration. MICCAI (2) (2011)
Courtney A. Bishop, Mark Jenkinson, Jesper L. R. Andersson, Jérôme Declerck, Dorit Merhof
Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and validation on clinical data. NeuroImage 55 (3) (2011)
Manav Bhushan, Julia A. Schnabel, Laurent Risser, Mattias P. Heinrich, J. Michael Brady, Mark Jenkinson
Motion Correction and Parameter Estimation in dceMRI Sequences: Application to Colorectal Cancer. MICCAI (1) (2011)
Daniel S. Marcus, John W. Harwell, Timothy R. Olsen, Michael R. Hodge, Matthew F. Glasser, Fred W. Prior, Mark Jenkinson, Timothy O. Laumann, Sandra W. Curtiss, David C. Van Essen
Informatics and Data Mining Tools and Strategies for the Human Connectome Project. Frontiers Neuroinformatics 5 (2011)
Andri C. Tziortzi, Gwenaëlle Douaud, Paul Shotbolt, Courtney A. Bishop, Graham E. Searle, Marc Laruelle, Eugenii A. Rabiner, Mark Jenkinson, Roger N. Gunn
A combined diffusion tensor imaging (DTI) and [11C]-(+)-PHNO positron emission tomography (PET) study to quantify dopamine D3/D2 receptors in pallidum. NeuroImage 52 (Supplement-1) (2010)
Kolawole Oluwole Babalola, Brian Patenaude, Paul Aljabar, Julia A. Schnabel, David N. Kennedy, William R. Crum, Stephen M. Smith, Timothy F. Cootes, Mark Jenkinson, Daniel Rueckert
Corrigendum to "An evaluation of four automatic methods of segmenting the subcortical structures in the brain" [NeuroImage 47 (2009) 1435-1447]. NeuroImage 49 (1) (2010)
Mojtaba Zarei, Brian Patenaude, Jessica Damoiseaux, Ciro Morgese, Steve M. Smith, Paul M. Matthews, Frederik Barkhof, Serge A. R. B. Rombouts, Ernesto Sanz-Arigita, Mark Jenkinson
Corrigendum to "Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease" [NeuroImage 49 (2010) 1-8]. NeuroImage 51 (2) (2010)
Courtney A. Bishop, Mark Jenkinson, Jérôme Declerck, Dorit Merhof
Evaluation of Hippocampal Segmentation Methods for Healthy and Pathological Subjects. VCBM (2010)
Mojtaba Zarei, Brian Patenaude, Jessica Damoiseaux, Ciro Morgese, Steve M. Smith, Paul M. Matthews, Frederik Barkhof, Serge A. R. B. Rombouts, Ernesto Sanz-Arigita, Mark Jenkinson
Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease. NeuroImage 49 (1) (2010)
Mark William Woolrich, Saâd Jbabdi, Brian Patenaude, Michael A. Chappell, Salima Makni, Timothy Behrens, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith
Bayesian analysis of neuroimaging data in FSL. NeuroImage 45 (1) (2009)
Aleksandar Petrovic, Stephen M. Smith, Ricarda A. Menke, Mark Jenkinson
Methods for Tractography-Driven Surface Registration of Brain Structures. MICCAI (1) (2009)
Clare B. Poynton, Mark Jenkinson, William M. Wells III
Atlas-Based Improved Prediction of Magnetic Field Inhomogeneity for Distortion Correction of EPI Data. MICCAI (1) (2009)
Arno Klein, Jesper L. R. Andersson, Babak A. Ardekani, John Ashburner, Brian B. Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James C. Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage 46 (3) (2009)
Kolawole Oluwole Babalola, Brian Patenaude, Paul Aljabar, Julia A. Schnabel, David N. Kennedy, William R. Crum, Stephen M. Smith, Timothy F. Cootes, Mark Jenkinson, Daniel Rueckert
An evaluation of four automatic methods of segmenting the subcortical structures in the brain. NeuroImage 47 (4) (2009)
Clare B. Poynton, Mark Jenkinson, Stephen Whalen, Alexandra J. Golby, William M. Wells III
Fieldmap-Free Retrospective Registration and Distortion Correction for EPI-Based Functional Imaging. MICCAI (2) (2008)
Kolawole O. Babalola, Brian Patenaude, Paul Aljabar, Julia A. Schnabel, David N. Kennedy, William R. Crum, Stephen M. Smith, Timothy F. Cootes, Mark Jenkinson, Daniel Rueckert
Comparison and Evaluation of Segmentation Techniques for Subcortical Structures in Brain MRI. MICCAI (1) (2008)
Jonathan C. W. Brooks, Christian F. Beckmann, Karla L. Miller, Richard G. Wise, Carlo A. Porro, Irene Tracey, Mark Jenkinson
Physiological noise modelling for spinal functional magnetic resonance imaging studies. NeuroImage 39 (2) (2008)
Stephen M. Smith, Anil Rao, Nicola De Stefano, Mark Jenkinson, Jonathan M. Schott, Paul M. Matthews, Nick C. Fox
Longitudinal and cross-sectional analysis of atrophy in Alzheimer's disease: Cross-validation of BSI, SIENA and SIENAX. NeuroImage 36 (4) (2007)

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Mark Jenkinson