René Werner

ORCID

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 37

Top Venues

Bildverarbeitung für die Medizin

CoRR

Medical Imaging: Image-Guided Procedures

Medical Imaging: Image Processing

University of Lübeck (PHD)

Education History

University of Lübeck

PHD

Publications

Lina Meyer, Lena-Marie Woelk, Christine E. Gee, Christian Lohr, Sukanya A. Kannabiran, Björn-Philipp Diercks, René Werner
Deep Image Prior for Spatio-temporal Fluorescence Microscopy Images DECO-DIP. Bildverarbeitung für die Medizin (2024)
Hümeyra Husseini, Maximilian Nielsen, Klaus Pantel, Harriet Wikman, Sabine Riethdorf, René Werner
Label Efficient Classification in Liquid Biopsy Data by Self-supervision. Bildverarbeitung für die Medizin (2023)
Moritz Wallrodt, Maximilian Schulz-Alsen, Hanno Ehlken, Thomas Rösch, Rüdiger Schmitz, René Werner
Extending Tempcyclegan for Virtual Augmentation of Gastrointestinal Endoscopy Training Simulators. Bildverarbeitung für die Medizin (2023)
Aneeq Zia, Kiran Bhattacharyya, Xi Liu, Max Berniker, Ziheng Wang, Rogerio Nespolo, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Bo Liu, David Austin, Yiheng Wang, Michal Futrega, Jean-Francois Puget, Zhenqiang Li, Yoichi Sato, Ryo Fujii, Ryo Hachiuma, Mana Masuda, Hideo Saito, An Wang, Mengya Xu, Mobarakol Islam, Long Bai, Winnie Pang, Hongliang Ren, Chinedu Innocent Nwoye, Luca Sestini, Nicolas Padoy, Maximilian Nielsen, Samuel Schüttler, Thilo Sentker, Hümeyra Husseini, Ivo M. Baltruschat, Rüdiger Schmitz, René Werner, Aleksandr Matsun, Mugariya Farooq, Numan Saeed, Jose Renato Restom Viera, Mohammad Yaqub, Neil Getty, Fangfang Xia, Zixuan Zhao, Xiaotian Duan, Xing Yao, Ange Lou, Hao Yang, Jintong Han, Jack H. Noble, Jie Ying Wu, Tamer Abdulbaki Alshirbaji, Nour Aldeen Jalal, Herag Arabian, Ning Ding, Knut Moeller, Weiliang Chen, Quan He, Lena Maier-Hein, Danail Stoyanov, Stefanie Speidel, Anthony M. Jarc
Surgical tool classification and localization: results and methods from the MICCAI 2022 SurgToolLoc challenge. CoRR (2023)
Maximilian Nielsen, Laura Wenderoth, Thilo Sentker, René Werner
Self-supervision for medical image classification: state-of-the-art performance with ~100 labeled training samples per class. CoRR (2023)
Frederic Madesta, Thilo Sentker, Tobias Gauer, René Werner
Deep learning-based conditional inpainting for restoration of artifact-affected 4D CT images. CoRR (2022)
Samuel Schüttler, Frederic Madesta, Thomas Rösch, René Werner, Rüdiger Schmitz
Reinforcement learning-basierte Patchpriorisierung zur beschleunigten Segmentierung von hochauflösenden Endoskopievideodaten. Bildverarbeitung für die Medizin (2022)
Dong Li, Guangyu Wang, René Werner, Hong Xie, Ji-Song Guan, Claus C. Hilgetag
Single Image-Based Vignetting Correction for Improving the Consistency of Neural Activity Analysis in 2-Photon Functional Microscopy. Frontiers Neuroinformatics 15 (2021)
Ivo M. Baltruschat, Patryk Szwargulski, Florian Griese, Mirco Grosser, René Werner, Tobias Knopp
Abstract: Reduktion der Kalibrierungszeit für die Magnetpartikelbildgebung mittels Deep Learning. Bildverarbeitung für die Medizin (2021)
Maximilian Nielsen, Moritz Waldmann, Thilo Sentker, Andreas Frölich, Jens Fiehler, René Werner
Abstract: Time Matters - Handling Spatio-temporal Perfusion Information for Automated Treatment in Cerebral Ischemia Scoring. Bildverarbeitung für die Medizin (2021)
Frederic Madesta, Rüdiger Schmitz, Thomas Rösch, René Werner
Abstract: Widening the Focus - Biomedical Image Segmentation Challenges and the Underestimated Role of Patch Sampling and Inference Strategies. Bildverarbeitung für die Medizin (2021)
Rüdiger Schmitz, Frederic Madesta, Maximilian Nielsen, Jenny Krause, Stefan Steurer, René Werner, Thomas Rösch
Multi-scale fully convolutional neural networks for histopathology image segmentation: From nuclear aberrations to the global tissue architecture. Medical Image Anal. 70 (2021)
Maximilian Nielsen, Moritz Waldmann, Thilo Sentker, Andreas Frölich, Jens Fiehler, René Werner
Time Matters: Handling Spatio-Temporal Perfusion Information for Automated TICI Scoring. MICCAI (6) (2020)
Nils Gessert, Thilo Sentker, Frederic Madesta, Rüdiger Schmitz, Helge Kniep, Ivo M. Baltruschat, René Werner, Alexander Schlaefer
Skin Lesion Classification Using CNNs With Patch-Based Attention and Diagnosis-Guided Loss Weighting. IEEE Trans. Biomed. Eng. 67 (2) (2020)
Frederic Madesta, Rüdiger Schmitz, Thomas Rösch, René Werner
Widening the Focus: Biomedical Image Segmentation Challenges and the Underestimated Role of Patch Sampling and Inference Strategies. MICCAI (4) (2020)
Fatemeh Hadaeghi, Björn-Philipp Diercks, Insa M. A. Wolf, René Werner
+ Fluorescence Microscopy. ISBI (2020)
Ivo M. Baltruschat, Patryk Szwargulski, Florian Griese, Mirco Grosser, René Werner, Tobias Knopp
3d-SMRnet: Achieving a New Quality of MPI System Matrix Recovery by Deep Learning. MICCAI (2) (2020)
Thilo Sentker, Frederic Madesta, René Werner
Patient-specific 4D Monte Carlo dose accumulation using correspondence-model-based motion prediction. Medical Imaging: Image-Guided Procedures (2019)
Nils Gessert, Thilo Sentker, Frederic Madesta, Rüdiger Schmitz, Helge Kniep, Ivo M. Baltruschat, René Werner, Alexander Schlaefer
Skin Lesion Classification Using CNNs with Patch-Based Attention and Diagnosis-Guided Loss Weighting. CoRR (2019)
Frederic Madesta, Tobias Gauer, Thilo Sentker, René Werner
Self-consistent deep learning-based boosting of 4D cone-beam computed tomography reconstruction. Medical Imaging: Image Processing (2019)
Maximilian Nielsen, Moritz Waldmann, Andreas Frölich, Jens Fiehler, René Werner
Machbarkeitsstudie zur CNN-basierten Identifikation und TICI-Klassifizierung zerebraler ischämischer Infarkte in DSA-Daten. Bildverarbeitung für die Medizin (2019)
Rüdiger Schmitz, Frederic Madesta, Maximilian Nielsen, René Werner, Thomas Rösch
Multi-scale fully convolutional neural networks for histopathology image segmentation: from nuclear aberrations to the global tissue architecture. CoRR (2019)
Ivo Matteo Baltruschat, Patryk Szwargulski, Florian Griese, Mirco Grosser, René Werner, Tobias Knopp
3d-SMRnet: Achieving a new quality of MPI system matrix recovery by deep learning. CoRR (2019)
René Werner, Dominik Weller, Johannes M. Salamon, Martin Möddel, Tobias Knopp
Toward employing the full potential of magnetic particle imaging: exploring visualization techniques and clinical use cases for real-time 3D vascular imaging. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging (2019)
Nils Gessert, Maximilian Nielsen, Mohsin Shaikh, René Werner, Alexander Schlaefer
Skin Lesion Classification Using Ensembles of Multi-Resolution EfficientNets with Meta Data. CoRR (2019)
Eike Mücke, Heinz Handels, René Werner
Self-reference-based and during-registration detection of motion artifacts in spatio-temporal image data. Medical Imaging: Image Processing (2018)
Thilo Sothmann, Tobias Gauer, René Werner
Influence of 4D CT motion artifacts on correspondence model-based 4D dose accumulation. Medical Imaging: Image-Guided Procedures (2018)
Thilo Sentker, Frederic Madesta, René Werner
GDL-FIRE ^\text 4D : Deep Learning-Based Fast 4D CT Image Registration. MICCAI (1) (2018)
Nils Gessert, Thilo Sentker, Frederic Madesta, Rüdiger Schmitz, Helge Kniep, Ivo M. Baltruschat, René Werner, Alexander Schlaefer
Skin Lesion Diagnosis using Ensembles, Unscaled Multi-Crop Evaluation and Loss Weighting. CoRR (2018)
Nik Mogadas, Thilo Sothmann, René Werner
Einfluss nicht-rigider Bildregistrierung auf 4D-Dosissimulation bei extrakranieller SBRT. Bildverarbeitung für die Medizin (2018)
Lasse Böhme, Frederic Madesta, Thilo Sentker, René Werner
Combining Good Old Random Forest and DeepLabv3+ for ISLES 2018 CT-Based Stroke Segmentation. BrainLes@MICCAI (1) (2018)
Sven-Thomas Antoni, Omar M. F. Ismail, Daniel Schetelig, Björn-Philipp Diercks, René Werner, Insa M. A. Wolf, Andreas H. Guse, Alexander Schlaefer
Systematic Analysis of Jurkat T-Cell Deformation in Fluorescence Microscopy Data. Bildverarbeitung für die Medizin (2017)
René Werner, Daniel Schetelig, Thilo Sothmann, Eike Mücke, Matthias Wilms, Bastian Cheng, Nils Daniel Forkert
Low Rank and Sparse Matrix Decomposition as Stroke Segmentation Prior: Useful or Not? A Random Forest-Based Evaluation Study. Bildverarbeitung für die Medizin (2017)
Daniel Schetelig, Jan Sedlacik, Felix Schmidt, Jens Fiehler, René Werner
Defining Restrictions and Limits of Registration-Based Quantification of Geometric Deformation in Cerebral Blood Vessels. Bildverarbeitung für die Medizin (2017)
Daniel Schetelig, Dennis Säring, Till Illies, Jan Sedlacik, Fabian Kording, René Werner
Phantom-based ground-truth generation for cerebral vessel segmentation and pulsatile deformation analysis. Medical Imaging: Image-Guided Procedures (2016)
René Werner, Matthias Wilms, Bastian Cheng, Nils Daniel Forkert
Beyond cost function masking: RPCA-based non-linear registration in the context of VLSM. PRNI (2016)
Franziska Werner, Caroline Jung, Martin Hofmann, Johannes Salamon, René Werner, Dennis Säring, Michael G. Kaul, Kolja Them, Oliver M. Weber, Tobias Mummert, Gerhard Adam, Harald Ittrich, Tobias Knopp
Geometrieplanung und Bildregistrierung mittels bimodaler Fiducial-Marker für Magnetic Particle Imaging. Bildverarbeitung für die Medizin (2016)
Daniel Schetelig, Insa M. A. Wolf, Björn-Philipp Diercks, Ralf Fliegert, Andreas H. Guse, Alexander Schlaefer, René Werner
A Modular Framework for Post-Processing and Analysis of Fluorescence Microscopy Image Sequences of Subcellular Calcium Dynamics. Bildverarbeitung für die Medizin (2015)
Jan Ehrhardt, Alexander Schmidt-Richberg, René Werner, Heinz Handels
Variational Registration. Bildverarbeitung für die Medizin (2015)
René Werner, Tobias Gauer
Reference geometry-based detection of (4D-)CT motion artifacts: a feasibility study. Medical Imaging: Image Processing (2015)
Mirko Marx, Jan Ehrhardt, René Werner, Heinz-Peter Schlemmer, Heinz Handels
Simulation of spatiotemporal CT data sets using a 4D MRI-based lung motion model. Int. J. Comput. Assist. Radiol. Surg. 9 (3) (2014)
Matthias Wilms, Jan Ehrhardt, René Werner, Mirko Marx, Heinz Handels
Statistical analysis of surrogate signals to incorporate respiratory motion variability into radiotherapy treatment planning. Medical Imaging: Image-Guided Procedures (2014)
Jonas Ortmüller, Matthias Wilms, René Werner, Heinz Handels
Kombination von Atemsignalen zur Optimierung der Prädiktion komplexer atmungsbedingter Organ- und Tumorbewegungen. Bildverarbeitung für die Medizin (2014)
René Werner, Christine Duscha, Alexander Schmidt-Richberg, Jan Ehrhardt, Heinz Handels
Assessing accuracy of non-linear registration in 4D image data using automatically detected landmark correspondences. Medical Imaging: Image Processing (2013)
Simon Hermann, René Werner
High Accuracy Optical Flow for 3D Medical Image Registration Using the Census Cost Function. PSIVT (2013)
Simon Hermann, René Werner
TV-L1-Based 3D Medical Image Registration with the Census Cost Function. PSIVT (2013)
Mirko Marx, Jan Ehrhardt, René Werner, Heinz-Peter Schlemmer, Heinz Handels
4D-MRT-basierte Simulation der Lungenbewegung in statischen CT-Daten. Bildverarbeitung für die Medizin (2013)
Hamidreza Mirzaei, Lisa Tang, René Werner, Ghassan Hamarneh
Decision Forests with Spatio-Temporal Features for Graph-Based Tumor Segmentation in 4D Lung CT. MLMI (2013)
Matthias Wilms, René Werner, Jan Ehrhardt, Alexander Schmidt-Richberg, Maximilian Blendowski, Heinz Handels
Surrogate-based diffeomorphic motion estimation for radiation therapy: comparison of multivariate regression approaches. Medical Imaging: Image Processing (2013)
Maximilian Blendowski, Matthias Wilms, René Werner, Heinz Handels
Simulation und Evaluation tiefenbildgebender Verfahren zur Prädiktion atmungsbedingter Organ- und Tumorbewegungen. Bildverarbeitung für die Medizin (2013)
Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Heinz Handels
Fast Explicit Diffusion for Registration with Direction-Dependent Regularization. WBIR (2012)
René Werner, Jan Ehrhardt, Alexander Schmidt-Richberg, Matthias Wilms, Maximilian Blendowski, Heinz Handels
A Diffeomorphic Framework for Surrogate-based Motion Estimation in Radiation Therapy: Concept and First Evaluation. GI-Jahrestagung (2012)
Alexander Schmidt-Richberg, Jan Ehrhardt, Matthias Wilms, René Werner, Heinz Handels
Evaluation of Algorithms for Lung Fissure Segmentation in CT Images. Bildverarbeitung für die Medizin (2012)
Alexander Schmidt-Richberg, Jan Ehrhardt, Matthias Wilms, René Werner, Heinz Handels
Pulmonary lobe segmentation with level sets. Medical Imaging: Image Processing (2012)
Santiago Suniaga, René Werner, Andre Kemmling, Michael Groth, Jens Fiehler, Nils Daniel Forkert
Automatische Detektion von Aneurysmen in 3D Time-of-Flight Magnetresonanzangiographie Datensätzen. GI-Jahrestagung (2012)
Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Heinz Handels
Lung Registration with Improved Fissure Alignment by Integration of Pulmonary Lobe Segmentation. MICCAI (2) (2012)
Alexander Schmidt-Richberg, René Werner, Heinz Handels, Jan Ehrhardt
Estimation of slipping organ motion by registration with direction-dependent regularization. Medical Image Anal. 16 (1) (2012)
Santiago Suniaga, René Werner, Andre Kemmling, Michael Groth, Jens Fiehler, Nils Daniel Forkert
Computer-Aided Detection of Aneurysms in 3D Time-of-Flight MRA Datasets. MLMI (2012)
Christine Duscha, René Werner, Alexander Schmidt-Richberg, Heinz Handels
Evaluation von Differentialoperatoren zur Detektion anatomischer Landmarken in thorakalen und abdominalen tomographischen Bilddaten. GI-Jahrestagung (2012)
René Werner, Jan Ehrhardt, Alexander Schmidt-Richberg, Heinz Handels
Model-based risk assessment for motion effects in 3D radiotherapy of lung tumors. Medical Imaging: Image-Guided Procedures (2012)
Alexander Schmidt-Richberg, René Werner, Jan Ehrhardt, Jan-Christoph Wolf, Heinz Handels
Landmark-driven parameter optimization for non-linear image registration. Medical Imaging: Image Processing (2011)
Jan Ehrhardt, René Werner, Alexander Schmidt-Richberg, Heinz Handels
Statistical Modeling of 4D Respiratory Lung Motion Using Diffeomorphic Image Registration. IEEE Trans. Medical Imaging 30 (2) (2011)
Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim
Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Medical Imaging 30 (11) (2011)
Jan-Christoph Wolf, Alexander Schmidt-Richberg, René Werner, Jan Ehrhardt, Heinz Handels
Optimierung nicht-linearer Registrierung durch automatisch detektierte Landmarken. Bildverarbeitung für die Medizin (2011)
René Werner, Jan-Christoph Wolf, Jan Ehrhardt, Alexander Schmidt-Richberg, Heinz Handels
Automatische Landmarkendetektion und -übertragung zur Evaluation der Registrierung von thorakalen CT-Daten. Bildverarbeitung für die Medizin (2010)
Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Heinz Handels
Direction-dependent regularization for improved estimation of liver and lung motion in 4D image data. Medical Imaging: Image Processing (2010)
René Werner, Jan Ehrhardt, Alexander Schmidt-Richberg, Anabell Heiß, Heinz Handels
Estimation of motion fields by non-linear registration for local lung motion analysis in 4D CT image data. Int. J. Comput. Assist. Radiol. Surg. 5 (6) (2010)
Jan Ehrhardt, René Werner, Alexander Schmidt-Richberg, Heinz Handels
A statistical shape and motion model for the prediction of respiratory lung motion. Medical Imaging: Image Processing (2010)
René Werner, Jan Ehrhardt, Alexander Schmidt-Richberg, Heinz Handels
Validation and comparison of a biophysical modeling approach and non-linear registration for estimation of lung motion fields in thoracic 4D CT data. Medical Imaging: Image Processing (2009)
René Werner, Jan Ehrhardt, Alexander Schmidt-Richberg, Florian Cremers, Heinz Handels
Estimation of Inner Lung Motion Fields by Non-linear Registration. Bildverarbeitung für die Medizin (2009)
Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Heinz Handels
Integrierte Segmentierung und Trajektorienberechnung mittels diffeomorpher Registrierung in räumlich-zeitlichen CT-Bildfolgen. Bildverarbeitung für die Medizin (2009)
Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Heinz Handels
Slipping Objects in Image Registration: Improved Motion Field Estimation with Direction-Dependent Regularization. MICCAI (1) (2009)
René Werner, Jan Ehrhardt, Rainer Schmidt, Heinz Handels
Finite-Element-Modellierung von respiratorischen Lungenbewegungen als elastizitätstheoretisches Kontaktproblem zur Bewegungsschätzung in 4D-CT-Daten. Bildverarbeitung für die Medizin (2008)
Jan Ehrhardt, René Werner, Alexander Schmidt-Richberg, Benny Schulz, Heinz Handels
Generation of a Mean Motion Model of the Lung Using 4D-CT Image Data. VCBM (2008)
Jan Ehrhardt, René Werner, Thorsten Frenzel, Wei Lu, Daniel Low, Heinz Handels
Analysis of free breathing motion using artifact reduced 4D CT image data. Medical Imaging: Image Processing (2007)
Heinz Handels, René Werner, Rainer Schmidt, Thorsten Frenzel, Wei Lu, Daniel Low, Jan Ehrhardt
4D medical image computing and visualization of lung tumor mobility in spatio-temporal CT image data. Int. J. Medical Informatics 76 (S3) (2007)
Heinz Handels, René Werner, Thorsten Frenzel, Dennis Säring, Wei Lu, Daniel Low, Jan Ehrhardt
Generation of 4D CT Image Data and Analysis of Lung Tumour Mobility during the Breathing Cycle. MIE (2006)
René Werner, Jan Ehrhardt, Thorsten Frenzel, Dennis Säring, Daniel Low, Heinz Handels
Rekonstruktion von 4D-CT-Daten aus räumlich-zeitlichen CT-Segmentfolgen zur Analyse atmungsbedingter Organbewegungen. Bildverarbeitung für die Medizin (2006)
Jan Ehrhardt, René Werner, Thorsten Frenzel, Dennis Säring, Wei Lu, Daniel Low, Heinz Handels
Reconstruction of 4D-CT data sets acquired during free breathing for the analysis of respiratory motion. Medical Imaging: Image Processing (2006)

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Publication Activity (10 Years)

Top Topics

Top Venues

René Werner