Ghassan Hamarneh

ORCID

Publication Activity (10 Years)

Years Active: 2000-2024
Publications (10 Years): 158

Top Venues

CoRR

ISBI

IEEE Trans. Medical Imaging

MICCAI (1)

Chalmers University of Technology, Gothenburg, Sweden (PHD)

Education History

Chalmers University of Technology, Gothenburg, Sweden

PHD

Publications

Weina Jin, Mostafa Fatehi, Ru Guo, Ghassan Hamarneh
Evaluating the clinical utility of artificial intelligence assistance and its explanation on the glioma grading task. Artif. Intell. Medicine 148 (2024)
Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh
AFreeCA: Annotation-Free Counting for All. CoRR (2024)
Nourhan Bayasi, Jamil Fayyad, Alceu Bissoto, Ghassan Hamarneh, Rafeef Garbi
BiasPruner: Debiased Continual Learning for Medical Image Classification. CoRR (2024)
Kumar Abhishek, Aditi Jain, Ghassan Hamarneh
Investigating the Quality of DermaMNIST and Fitzpatrick17k Dermatological Image Datasets. CoRR (2024)
Hanene Ben Yedder, Ben Cardoen, Majid Shokoufi, Farid Golnaraghi, Ghassan Hamarneh
Deep orthogonal multi-wavelength fusion for tomogram-free diagnosis in diffuse optical imaging. Comput. Biol. Medicine 178 (2024)
Kumar Abhishek, Colin J. Brown, Ghassan Hamarneh
Multi-sample ζ-mixup: richer, more realistic synthetic samples from a p-series interpolant. J. Big Data 11 (1) (2024)
Ashish Sinha, Jeremy Kawahara, Arezou Pakzad, Kumar Abhishek, Matthieu Ruthven, Enjie Ghorbel, Anis Kacem, Djamila Aouada, Ghassan Hamarneh
DermSynth3D: Synthesis of in-the-wild annotated dermatology images. Medical Image Anal. 95 (2024)
Aliasghar Khani, Saeid Asgari Taghanaki, Aditya Sanghi, Ali Mahdavi-Amiri, Ghassan Hamarneh
SLiMe: Segment Like Me. ICLR (2024)
Ashish Sinha, Ghassan Hamarneh
Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields. CoRR (2024)
Shubam Sachdeva, Haoyao Ruan, Ghassan Hamarneh, Dawn M. Behne, Allard Jongman, Joan A. Sereno, Yue Wang
Plain-to-clear speech video conversion for enhanced intelligibility. Int. J. Speech Technol. 26 (1) (2023)
Weina Jin, Xiaoxiao Li, Ghassan Hamarneh
Rethinking AI Explainability and Plausibility. CoRR (2023)
Weina Jin, Xiaoxiao Li, Mostafa Fatehi, Ghassan Hamarneh
Guidelines and evaluation of clinical explainable AI in medical image analysis. Medical Image Anal. 84 (2023)
Zahra Mirikharaji, Kumar Abhishek, Alceu Bissoto, Catarina Barata, Sandra Avila, Eduardo Valle, M. Emre Celebi, Ghassan Hamarneh
A survey on deep learning for skin lesion segmentation. Medical Image Anal. 88 (2023)
Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets. CoRR (2023)
Nourhan Bayasi, Siyi Du, Ghassan Hamarneh, Rafeef Garbi
Continual-GEN: Continual Group Ensembling for Domain-agnostic Skin Lesion Classification. ISIC/Care-AI/MedAGI/DeCaF@MICCAI (2023)
Ashish Sinha, Jeremy Kawahara, Arezou Pakzad, Kumar Abhishek, Matthieu Ruthven, Enjie Ghorbel, Anis Kacem, Djamila Aouada, Ghassan Hamarneh
DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images. CoRR (2023)
Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets. MICCAI (4) (2023)
Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh
Learning-to-Count by Learning-to-Rank. CRV (2023)
Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh
SYRAC: Synthesize, Rank, and Count. CoRR (2023)
Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
AViT: Adapting Vision Transformers for Small Skin Lesion Segmentation Datasets. ISIC/Care-AI/MedAGI/DeCaF@MICCAI (2023)
Aliasghar Khani, Saeid Asgari Taghanaki, Aditya Sanghi, Ali Mahdavi-Amiri, Ghassan Hamarneh
SLiMe: Segment Like Me. CoRR (2023)
Saeed Izadi, Darren B. Sutton, Ghassan Hamarneh
Image denoising in the deep learning era. Artif. Intell. Rev. 56 (7) (2023)
Weina Jin, Jianyu Fan, Diane Gromala, Philippe Pasquier, Ghassan Hamarneh
Invisible Users: Uncovering End-Users' Requirements for Explainable AI via Explanation Forms and Goals. CoRR (2023)
Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
AViT: Adapting Vision Transformers for Small Skin Lesion Segmentation Datasets. CoRR (2023)
Saurabh Garg, Haoyao Ruan, Ghassan Hamarneh, Dawn M. Behne, Allard Jongman, Joan A. Sereno, Yue Wang
Mouth2Audio: intelligible audio synthesis from videos with distinctive vowel articulation. Int. J. Speech Technol. 26 (on) (2023)
Ivan Robert Nabi, Ben Cardoen, Ismail M. Khater, Guang Gao, Timothy H. Wong, Ghassan Hamarneh
AI-based analysis of super-resolution microscopy: Biological discovery in the absence of ground truth. CoRR (2023)
Weina Jin, Jianyu Fan, Diane Gromala, Philippe Pasquier, Xiaoxiao Li, Ghassan Hamarneh
Transcending XAI Algorithm Boundaries through End-User-Inspired Design. CoRR (2022)
Mayur Mallya, Ghassan Hamarneh
Deep Multimodal Guidance for Medical Image Classification. MICCAI (8) (2022)
Mayur Mallya, Ghassan Hamarneh
Deep Multimodal Guidance for Medical Image Classification. CoRR (2022)
Saeid Asgari Taghanaki, Aliasghar Khani, Fereshte Khani, Ali Gholami, Linh Tran, Ali Mahdavi-Amiri, Ghassan Hamarneh
MaskTune: Mitigating Spurious Correlations by Forcing to Explore. NeurIPS (2022)
Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
BoosterNet: Improving Domain Generalization of Deep Neural Nets using Culpability-Ranked Features. CVPR (2022)
Arezou Pakzad, Kumar Abhishek, Ghassan Hamarneh
CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. CoRR (2022)
Weina Jin, Xiaoxiao Li, Mostafa Fatehi, Ghassan Hamarneh
Guidelines and evaluation for clinical explainable AI on medical image analysis. CoRR (2022)
Siyi Du, Ben Hers, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
FairDisCo: Fairer AI in Dermatology via Disentanglement Contrastive Learning. ECCV Workshops (4) (2022)
Siyi Du, Ben Hers, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
FairDisCo: Fairer AI in Dermatology via Disentanglement Contrastive Learning. CoRR (2022)
Weina Jin, Xiaoxiao Li, Ghassan Hamarneh
Evaluating Explainable AI on a Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements? CoRR (2022)
Mohammad Arafat Hussain, Zahra Mirikharaji, Mohammad Momeny, Mahmoud Marhamati, Ali Asghar Neshat, Rafeef Garbi, Ghassan Hamarneh
Active deep learning from a noisy teacher for semi-supervised 3D image segmentation: Application to COVID-19 pneumonia infection in CT. Comput. Medical Imaging Graph. 102 (2022)
Zahra Mirikharaji, Catarina Barata, Kumar Abhishek, Alceu Bissoto, Sandra Avila, Eduardo Valle, M. Emre Celebi, Ghassan Hamarneh
A Survey on Deep Learning for Skin Lesion Segmentation. CoRR (2022)
M. Sadegh Saberian, Kathleen P. Moriarty, Andrea D. Olmstead, Christian Hallgrimson, François Jean, Ivan Robert Nabi, Maxwell W. Libbrecht, Ghassan Hamarneh
DEEMD: Drug Efficacy Estimation Against SARS-CoV-2 Based on Cell Morphology With Deep Multiple Instance Learning. IEEE Trans. Medical Imaging 41 (11) (2022)
Arezou Pakzad, Kumar Abhishek, Ghassan Hamarneh
CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. ECCV Workshops (4) (2022)
Mengliu Zhao, Jeremy Kawahara, Kumar Abhishek, Sajjad Shamanian, Ghassan Hamarneh
Skin3D: Detection and longitudinal tracking of pigmented skin lesions in 3D total-body textured meshes. Medical Image Anal. 77 (2022)
Kumar Abhishek, Colin J. Brown, Ghassan Hamarneh
Multi-Sample ζ-mixup: Richer, More Realistic Synthetic Samples from a p-Series Interpolant. CoRR (2022)
Saeid Asgari Taghanaki, Aliasghar Khani, Fereshte Khani, Ali Gholami, Linh Tran, Ali Mahdavi-Amiri, Ghassan Hamarneh
MaskTune: Mitigating Spurious Correlations by Forcing to Explore. CoRR (2022)
Ivan S. Klyuzhin, Yixi Xu, Anthony Ortiz, Juan Lavista Ferres, Ghassan Hamarneh, Arman Rahmim
Testing the Ability of Convolutional Neural Networks to Learn Radiomic Features. Comput. Methods Programs Biomed. 219 (2022)
Hanene Ben Yedder, Ben Cardoen, Majid Shokoufi, Farid Golnaraghi, Ghassan Hamarneh
Multitask Deep Learning Reconstruction and Localization of Lesions in Limited Angle Diffuse Optical Tomography. IEEE Trans. Medical Imaging 41 (3) (2022)
Weina Jin, Xiaoxiao Li, Ghassan Hamarneh
Evaluating Explainable AI on a Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements? AAAI (2022)
Mengliu Zhao, Jeremy Kawahara, Sajjad Shamanian, Kumar Abhishek, Priyanka Chandrashekar, Ghassan Hamarneh
Detection and Longitudinal Tracking of Pigmented Skin Lesions in 3D Total-Body Skin Textured Meshes. CoRR (2021)
Weina Jin, Jianyu Fan, Diane Gromala, Philippe Pasquier, Ghassan Hamarneh
EUCA: A Practical Prototyping Framework towards End-User-Centered Explainable Artificial Intelligence. CoRR (2021)
Hanene Ben Yedder, Ben Cardoen, Ghassan Hamarneh
Deep learning for biomedical image reconstruction: a survey. Artif. Intell. Rev. 54 (1) (2021)
Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi
Cascaded Regression Neural Nets for Kidney Localization and Segmentation-free Volume Estimation. IEEE Trans. Medical Imaging 40 (6) (2021)
Kumar Abhishek, Ghassan Hamarneh
Matthews Correlation Coefficient Loss For Deep Convolutional Networks: Application To Skin Lesion Segmentation. ISBI (2021)
Mohammad Momeny, Ali Asghar Neshat, Mohammad Arafat Hussain, Solmaz Kia, Mahmoud Marhamati, Ahmad Jahanbakhshi, Ghassan Hamarneh
Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images. Comput. Biol. Medicine 136 (2021)
Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi
Learnable image histograms-based deep radiomics for renal cell carcinoma grading and staging. Comput. Medical Imaging Graph. 90 (2021)
Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
Culprit-Prune-Net: Efficient Continual Sequential Multi-domain Learning with Application to Skin Lesion Classification. MICCAI (7) (2021)
M. Sadegh Saberian, Kathleen P. Moriarty, Andrea D. Olmstead, Ivan Robert Nabi, François Jean, Maxwell W. Libbrecht, Ghassan Hamarneh
DEEMD: Drug Efficacy Estimation against SARS-CoV-2 based on cell Morphology with Deep multiple instance learning. CoRR (2021)
Saeid Asgari Taghanaki, Kumar Abhishek, Joseph Paul Cohen, Julien Cohen-Adad, Ghassan Hamarneh
Deep semantic segmentation of natural and medical images: a review. Artif. Intell. Rev. 54 (1) (2021)
Zahra Mirikharaji, Kumar Abhishek, Saeed Izadi, Ghassan Hamarneh
D-LEMA: Deep Learning Ensembles From Multiple Annotations - Application to Skin Lesion Segmentation. CVPR Workshops (2021)
Weina Jin, Xiaoxiao Li, Ghassan Hamarneh
One Map Does Not Fit All: Evaluating Saliency Map Explanation on Multi-Modal Medical Images. CoRR (2021)
Kumar Abhishek, Ghassan Hamarneh, Mark S. Drew
Illumination-based Transformations Improve Skin Lesion Segmentation in Dermoscopic Images. CoRR (2020)
Zahra Mirikharaji, Kumar Abhishek, Saeed Izadi, Ghassan Hamarneh
D-LEMA: Deep Learning Ensembles from Multiple Annotations - Application to Skin Lesion Segmentation. CoRR (2020)
Anmol Sharma, Ghassan Hamarneh
Missing MRI Pulse Sequence Synthesis Using Multi-Modal Generative Adversarial Network. IEEE Trans. Medical Imaging 39 (4) (2020)
Hanene Ben Yedder, Ben Cardoen, Ghassan Hamarneh
Deep Learning for Biomedical Image Reconstruction: A Survey. CoRR (2020)
Saeed Izadi, Ghassan Hamarneh
Patch-based Non-Local Bayesian Networks for Blind Confocal Microscopy Denoising. CoRR (2020)
Kumar Abhishek, Ghassan Hamarneh, Mark S. Drew
Illumination-based Transformations Improve Skin Lesion Segmentation in Dermoscopic Images. CVPR Workshops (2020)
Ismail M. Khater, Ivan Robert Nabi, Ghassan Hamarneh
A Review of Super-Resolution Single-Molecule Localization Microscopy Cluster Analysis and Quantification Methods. Patterns 1 (3) (2020)
Kumar Abhishek, Ghassan Hamarneh
Matthews Correlation Coefficient Loss for Deep Convolutional Networks: Application to Skin Lesion Segmentation. CoRR (2020)
Ben Cardoen, Hanene Ben Yedder, Anmol Sharma, Keng C. Chou, Ivan Robert Nabi, Ghassan Hamarneh
ERGO: Efficient Recurrent Graph Optimized Emitter Density Estimation in Single Molecule Localization Microscopy. IEEE Trans. Medical Imaging 39 (6) (2020)
Saeed Izadi, Ghassan Hamarneh
Patch-Based Non-local Bayesian Networks for Blind Confocal Microscopy Denoising. MICCAI (5) (2020)
Shahab Aslani, Vittorio Murino, Michael Dayan, Roger C. Tam, Diego Sona, Ghassan Hamarneh
Scanner Invariant Multiple Sclerosis Lesion Segmentation from MRI. ISBI (2020)
Saeid Asgari Taghanaki, Kumar Abhishek, Joseph Paul Cohen, Julien Cohen-Adad, Ghassan Hamarneh
Deep Semantic Segmentation of Natural and Medical Images: A Review. CoRR (2019)
Kumar Abhishek, Ghassan Hamarneh
Mask2Lesion: Mask-Constrained Adversarial Skin Lesion Image Synthesis. SASHIMI@MICCAI (2019)
Li Wang, Yinghuan Shi, Heung-Il Suk, J. Alison Noble, Ghassan Hamarneh
Special issue on machine learning in medical imaging. Comput. Medical Imaging Graph. 74 (2019)
Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi
Renal Cell Carcinoma Staging with Learnable Image Histogram-Based Deep Neural Network. MLMI@MICCAI (2019)
Yiqi Yan, Jeremy Kawahara, Ghassan Hamarneh
Melanoma Recognition via Visual Attention. IPMI (2019)
Saeed Izadi, Zahra Mirikharaji, Mengliu Zhao, Ghassan Hamarneh
WhiteNNer-Blind Image Denoising via Noise Whiteness Priors. CoRR (2019)
Kumar Abhishek, Ghassan Hamarneh
Mask2Lesion: Mask-Constrained Adversarial Skin Lesion Image Synthesis. CoRR (2019)
Saeid Asgari Taghanaki, Kumar Abhishek, Shekoofeh Azizi, Ghassan Hamarneh
A Kernelized Manifold Mapping to Diminish the Effect of Adversarial Perturbations. CVPR (2019)
Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi
ImHistNet: Learnable Image Histogram Based DNN with Application to Noninvasive Determination of Carcinoma Grades in CT Scans. MICCAI (6) (2019)
Hanene Ben Yedder, Majid Shokoufi, Ben Cardoen, Farid Golnaraghi, Ghassan Hamarneh
Limited-Angle Diffuse Optical Tomography Image Reconstruction Using Deep Learning. MICCAI (1) (2019)
Jeremy Kawahara, Sara Daneshvar, Giuseppe Argenziano, Ghassan Hamarneh
Seven-Point Checklist and Skin Lesion Classification Using Multitask Multimodal Neural Nets. IEEE J. Biomed. Health Informatics 23 (2) (2019)
Saurabh Garg, Ghassan Hamarneh, Allard Jongman, Joan A. Sereno, Yue Wang
Computer-vision analysis reveals facial movements made during Mandarin tone production align with pitch trajectories. Speech Commun. 113 (2019)
Saeed Izadi, Darren Sutton, Ghassan Hamarneh
Image Super Resolution via Bilinear Pooling: Application to Confocal Endomicroscopy. MLMIR@MICCAI (2019)
Saeid Asgari Taghanaki, Kumar Abhishek, Shekoofeh Azizi, Ghassan Hamarneh
A Kernelized Manifold Mapping to Diminish the Effect of Adversarial Perturbations. CoRR (2019)
Saeid Asgari Taghanaki, Yefeng Zheng, Shaohua Kevin Zhou, Bogdan Georgescu, Puneet Sharma, Daguang Xu, Dorin Comaniciu, Ghassan Hamarneh
Combo loss: Handling input and output imbalance in multi-organ segmentation. Comput. Medical Imaging Graph. 75 (2019)
Saeedeh Afshari, Aïcha BenTaieb, Zahra Mirikharaji, Ghassan Hamarneh
Weakly supervised fully convolutional network for PET lesion segmentation. Medical Imaging: Image Processing (2019)
Saeid Asgari Taghanaki, Aïcha BenTaieb, Anmol Sharma, Shaohua Kevin Zhou, Yefeng Zheng, Bogdan Georgescu, Puneet Sharma, Zhoubing Xu, Dorin Comaniciu, Ghassan Hamarneh
Select, Attend, and Transfer: Light, Learnable Skip Connections. MLMI@MICCAI (2019)
Colin J. Brown, Steven P. Miller, Brian G. Booth, Jill G. Zwicker, Ruth E. Grunau, Anne R. Synnes, Vann Chau, Ghassan Hamarneh
Predictive connectome subnetwork extraction with anatomical and connectivity priors. Comput. Medical Imaging Graph. 71 (2019)
Saeid Asgari Taghanaki, Kumar Abhishek, Ghassan Hamarneh
Improved Inference via Deep Input Transfer. CoRR (2019)
Zahra Mirikharaji, Yiqi Yan, Ghassan Hamarneh
Learning to Segment Skin Lesions from Noisy Annotations. CoRR (2019)
Jeremy Kawahara, Ghassan Hamarneh
Fully Convolutional Neural Networks to Detect Clinical Dermoscopic Features. IEEE J. Biomed. Health Informatics 23 (2) (2019)
Saeid Asgari Taghanaki, Mohammad Havaei, Tess Berthier, Francis Dutil, Lisa Di-Jorio, Ghassan Hamarneh, Yoshua Bengio
InfoMask: Masked Variational Latent Representation to Localize Chest Disease. MICCAI (6) (2019)
Saeed Izadi, Zahra Mirikharaji, Mengliu Zhao, Ghassan Hamarneh
WhiteNNer-Blind Image Denoising via Noise Whiteness Priors. ICCV Workshops (2019)
Zahra Mirikharaji, Yiqi Yan, Ghassan Hamarneh
Learning to Segment Skin Lesions from Noisy Annotations. DART/MIL3ID@MICCAI (2019)
Anmol Sharma, Ghassan Hamarneh
Missing MRI Pulse Sequence Synthesis using Multi-Modal Generative Adversarial Network. CoRR (2019)
Chris Yoon, Ghassan Hamarneh, Rafeef Garbi
Generalizable Feature Learning in the Presence of Data Bias and Domain Class Imbalance with Application to Skin Lesion Classification. MICCAI (4) (2019)
Weina Jin, Mostafa Fatehi, Kumar Abhishek, Mayur Mallya, Brian Toyota, Ghassan Hamarneh
Applying Artificial Intelligence to Glioma Imaging: Advances and Challenges. CoRR (2019)
Saeid Asgari Taghanaki, Kumar Abhishek, Ghassan Hamarneh
Improved Inference via Deep Input Transfer. MICCAI (6) (2019)
Mengliu Zhao, Ghassan Hamarneh
Tree-LSTM: Using LSTM to Encode Memory in Anatomical Tree Prediction from 3D Images. MLMI@MICCAI (2019)
Saeid Asgari Taghanaki, Kumar Abhishek, Ghassan Hamarneh
Signed Input Regularization. CoRR (2019)
Ismail M. Khater, Fanrui Meng, Ivan Robert Nabi, Ghassan Hamarneh
Identification of caveolin-1 domain signatures via machine learning and graphlet analysis of single-molecule super-resolution data. Bioinform. 35 (18) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ghassan Hamarneh