John M. Pauly

Publication Activity (10 Years)

Years Active: 2000-2024
Publications (10 Years): 69

Top Topics

Compressed Sensing

Clinical Practice

Top Venues

IEEE Trans. Medical Imaging

Publications

Liyue Shen, John M. Pauly, Lei Xing
NeRP: Implicit Neural Representation Learning With Prior Embedding for Sparsely Sampled Image Reconstruction. IEEE Trans. Neural Networks Learn. Syst. 35 (1) (2024)
Arda Sahiner, Tolga Ergen, Batu Ozturkler, John M. Pauly, Morteza Mardani, Mert Pilanci
Scaling Convex Neural Networks with Burer-Monteiro Factorization. ICLR (2024)
Dave Van Veen, Cara Van Uden, Louis Blankemeier, Jean-Benoit Delbrouck, Asad Aali, Christian Bluethgen, Anuj Pareek, Malgorzata Polacin, William Collins, Neera Ahuja, Curtis P. Langlotz, Jason Hom, Sergios Gatidis, John M. Pauly, Akshay S. Chaudhari
Clinical Text Summarization: Adapting Large Language Models Can Outperform Human Experts. CoRR (2023)
Dave Van Veen, Cara Van Uden, Maayane Attias, Anuj Pareek, Christian Bluethgen, Malgorzata Polacin, Wah Chiu, Jean-Benoit Delbrouck, Juan Manuel Zambrano Chaves, Curtis P. Langlotz, Akshay S. Chaudhari, John M. Pauly
RadAdapt: Radiology Report Summarization via Lightweight Domain Adaptation of Large Language Models. CoRR (2023)
Dave Van Veen, Cara Van Uden, Maayane Attias, Anuj Pareek, Christian Bluethgen, Malgorzata Polacin, Wah Chiu, Jean-Benoit Delbrouck, Juan Manuel Zambrano Chaves, Curtis P. Langlotz, Akshay Chaudhari, John M. Pauly
RadAdapt: Radiology Report Summarization via Lightweight Domain Adaptation of Large Language Models. BioNLP@ACL (2023)
Frank Ong, Zheng Zhong, Congyu Liao, Michael Lustig, Shreyas S. Vasanawala, John M. Pauly
SLfRank: Shinnar-Le-Roux Pulse Design With Reduced Energy and Accurate Phase Profiles Using Rank Factorization. IEEE Trans. Medical Imaging 42 (5) (2023)
Batu Ozturkler, Arda Sahiner, Tolga Ergen, Arjun D. Desai, Christopher M. Sandino, Shreyas Vasanawala, John M. Pauly, Morteza Mardani, Mert Pilanci
GLEAM: Greedy Learning for Large-Scale Accelerated MRI Reconstruction. CoRR (2022)
Beliz Gunel, Arda Sahiner, Arjun D. Desai, Akshay S. Chaudhari, Shreyas Vasanawala, Mert Pilanci, John M. Pauly
Scale-Equivariant Unrolled Neural Networks for Data-Efficient Accelerated MRI Reconstruction. CoRR (2022)
Tolga Ergen, Arda Sahiner, Batu Ozturkler, John M. Pauly, Morteza Mardani, Mert Pilanci
Demystifying Batch Normalization in ReLU Networks: Equivalent Convex Optimization Models and Implicit Regularization. ICLR (2022)
Arda Sahiner, Tolga Ergen, Batu Ozturkler, John M. Pauly, Morteza Mardani, Mert Pilanci
Unraveling Attention via Convex Duality: Analysis and Interpretations of Vision Transformers. ICML (2022)
Dave Van Veen, Rogier van der Sluijs, Batu Ozturkler, Arjun D. Desai, Christian Bluethgen, Robert D. Boutin, Marc H. Willis, Gordon Wetzstein, David B. Lindell, Shreyas Vasanawala, John M. Pauly, Akshay S. Chaudhari
Scale-Agnostic Super-Resolution in MRI using Feature-Based Coordinate Networks. CoRR (2022)
Arda Sahiner, Tolga Ergen, Batu Ozturkler, John M. Pauly, Morteza Mardani, Mert Pilanci
Unraveling Attention via Convex Duality: Analysis and Interpretations of Vision Transformers. CoRR (2022)
Christopher Vassos, Fraser Robb, Shreyas Vasanawala, John M. Pauly, Greig C. Scott
A Semi-Blind Calibration and Compensation Method for Dynamic Range Recovery of Low-Power Pre-Amplifiers in MRI Receive Chains. IEEE Trans. Medical Imaging 41 (12) (2022)
Ke Lei, Ali B. Syed, Xucheng Zhu, John M. Pauly, Shreyas S. Vasanawala
Automated MRI Field of View Prescription from Region of Interest Prediction by Intra-stack Attention Neural Network. CoRR (2022)
Arjun D. Desai, Beliz Gunel, Batu M. Ozturkler, Harris Beg, Shreyas Vasanawala, Brian A. Hargreaves, Christopher Ré, John M. Pauly, Akshay S. Chaudhari
VORTEX: Physics-Driven Data Augmentations Using Consistency Training for Robust Accelerated MRI Reconstruction. MIDL (2022)
Arda Sahiner, Tolga Ergen, Batu Ozturkler, Burak Bartan, John M. Pauly, Morteza Mardani, Mert Pilanci
Hidden Convexity of Wasserstein GANs: Interpretable Generative Models with Closed-Form Solutions. ICLR (2022)
Ke Lei, Ali B. Syed, Xucheng Zhu, John M. Pauly, Shreyas S. Vasanawala
Artifact- and content-specific quality assessment for MRI with image rulers. Medical Image Anal. 77 (2022)
Beliz Gunel, Arda Sahiner, Arjun D. Desai, Akshay S. Chaudhari, Shreyas Vasanawala, Mert Pilanci, John M. Pauly
Scale-Equivariant Unrolled Neural Networks for Data-Efficient Accelerated MRI Reconstruction. MICCAI (6) (2022)
Liyue Shen, Lequan Yu, Wei Zhao, John M. Pauly, Lei Xing
Novel-view X-ray projection synthesis through geometry-integrated deep learning. Medical Image Anal. 77 (2022)
Liyue Shen, Wei Zhao, Dante Capaldi, John M. Pauly, Lei Xing
A geometry-informed deep learning framework for ultra-sparse 3D tomographic image reconstruction. Comput. Biol. Medicine 148 (2022)
Elizabeth K. Cole, Qingxi Meng, John M. Pauly, Shreyas Vasanawala
Learned Compression of High Dimensional Image Datasets. CVPR Workshops (2022)
Ke Lei, Morteza Mardani, John M. Pauly, Shreyas S. Vasanawala
Wasserstein GANs for MR Imaging: From Paired to Unpaired Training. IEEE Trans. Medical Imaging 40 (1) (2021)
Arda Sahiner, Morteza Mardani, Batu Ozturkler, Mert Pilanci, John M. Pauly
Convex Regularization behind Neural Reconstruction. ICLR (2021)
Liyue Shen, Wei Zhao, Dante Capaldi, John M. Pauly, Lei Xing
A Geometry-Informed Deep Learning Framework for Ultra-Sparse 3D Tomographic Image Reconstruction. CoRR (2021)
Arda Sahiner, Tolga Ergen, John M. Pauly, Mert Pilanci
Vector-output ReLU Neural Network Problems are Copositive Programs: Convex Analysis of Two Layer Networks and Polynomial-time Algorithms. ICLR (2021)
Nicholas Dwork, Daniel O'Connor, Corey A. Baron, Ethan M. I. Johnson, Adam B. Kerr, John M. Pauly, Peder E. Z. Larson
Utilizing the wavelet transform's structure in compressed sensing. Signal Image Video Process. 15 (7) (2021)
Arda Sahiner, Tolga Ergen, Batu Ozturkler, Burak Bartan, John M. Pauly, Morteza Mardani, Mert Pilanci
Hidden Convexity of Wasserstein GANs: Interpretable Generative Models with Closed-Form Solutions. CoRR (2021)
Elizabeth K. Cole, Frank Ong, Shreyas S. Vasanawala, John M. Pauly
Fast Unsupervised MRI Reconstruction Without Fully-Sampled Ground Truth Data Using Generative Adversarial Networks. ICCVW (2021)
Liyue Shen, Wentao Zhu, Xiaosong Wang, Lei Xing, John M. Pauly, Baris Turkbey, Stephanie Anne Harmon, Thomas Hogue Sanford, Sherif Mehralivand, Peter L. Choyke, Bradford J. Wood, Daguang Xu
Multi-Domain Image Completion for Random Missing Input Data. IEEE Trans. Medical Imaging 40 (4) (2021)
Vineet Edupuganti, Morteza Mardani, Shreyas Vasanawala, John M. Pauly
Uncertainty Quantification in Deep MRI Reconstruction. IEEE Trans. Medical Imaging 40 (1) (2021)
Ke Lei, John M. Pauly, Shreyas S. Vasanawala
Artifact- and content-specific quality assessment for MRI with image rulers. CoRR (2021)
Arjun D. Desai, Batu M. Ozturkler, Christopher M. Sandino, Shreyas Vasanawala, Brian A. Hargreaves, Christopher M. Re, John M. Pauly, Akshay S. Chaudhari
Noise2Recon: A Semi-Supervised Framework for Joint MRI Reconstruction and Denoising. CoRR (2021)
Liyue Shen, John M. Pauly, Lei Xing
NeRP: Implicit Neural Representation Learning with Prior Embedding for Sparsely Sampled Image Reconstruction. CoRR (2021)
Tolga Ergen, Arda Sahiner, Batu Ozturkler, John M. Pauly, Morteza Mardani, Mert Pilanci
Demystifying Batch Normalization in ReLU Networks: Equivalent Convex Optimization Models and Implicit Regularization. CoRR (2021)
Guanhua Wang, Enhao Gong, Suchandrima Banerjee, Dann Martin, Elizabeth Tong, Jay Choi, Huijun Chen, Max Wintermark, John M. Pauly, Greg Zaharchuk
Synthesize High-Quality Multi-Contrast Magnetic Resonance Imaging From Multi-Echo Acquisition Using Multi-Task Deep Generative Model. IEEE Trans. Medical Imaging 39 (10) (2020)
Jeffrey J. Ma, Ukash Nakarmi, Cedric Yue Sik Kin, Christopher M. Sandino, Joseph Y. Cheng, Ali B. Syed, Peter Wei, John M. Pauly, Shreyas S. Vasanawala
Diagnostic Image Quality Assessment and Classification in Medical Imaging: Opportunities and Challenges. ISBI (2020)
Arda Sahiner, Tolga Ergen, John M. Pauly, Mert Pilanci
Vector-output ReLU Neural Network Problems are Copositive Programs: Convex Analysis of Two Layer Networks and Polynomial-time Algorithms. CoRR (2020)
Elizabeth K. Cole, Joseph Y. Cheng, John M. Pauly, Shreyas S. Vasanawala
Complex-Valued Convolutional Neural Networks for MRI Reconstruction. CoRR (2020)
Ukash Nakarmi, Joseph Y. Cheng, Edgar P. Rios, Morteza Mardani, John M. Pauly, Leslie Ying, Shreyas S. Vasanawala
Multi-scale Unrolled Deep Learning Framework for Accelerated Magnetic Resonance Imaging. ISBI (2020)
Enhao Gong, Jia Guo, Jiang Liu, Audrey P. Fan, John M. Pauly, Greg Zaharchuk
Deep learning and multi-contrast-based denoising for low-SNR Arterial Spin Labeling (ASL) MRI. Medical Imaging: Image Processing (2020)
Arda Sahiner, Morteza Mardani, Batu Ozturkler, Mert Pilanci, John M. Pauly
Convex Regularization Behind Neural Reconstruction. CoRR (2020)
Christopher M. Sandino, Joseph Y. Cheng, Feiyu Chen, Morteza Mardani, John M. Pauly, Shreyas S. Vasanawala
Compressed Sensing: From Research to Clinical Practice With Deep Neural Networks: Shortening Scan Times for Magnetic Resonance Imaging. IEEE Signal Process. Mag. 37 (1) (2020)
Junshen Xu, Enhao Gong, Jiahong Ouyang, John M. Pauly, Greg Zaharchuk
Ultra-low-dose 18F-FDG brain PET/MR denoising using deep learning and multi-contrast information. Medical Imaging: Image Processing (2020)
Liyue Shen, Wentao Zhu, Xiaosong Wang, Lei Xing, John M. Pauly, Baris Turkbey, Stephanie Anne Harmon, Thomas Hogue Sanford, Sherif Mehralivand, Peter L. Choyke, Bradford J. Wood, Daguang Xu
Multi-Domain Image Completion for Random Missing Input Data. CoRR (2020)
Elizabeth K. Cole, John M. Pauly, Shreyas S. Vasanawala, Frank Ong
Unsupervised MRI Reconstruction with Generative Adversarial Networks. CoRR (2020)
Ke Lei, Morteza Mardani, John M. Pauly, Shreyas S. Vasawanala
Wasserstein GANs for MR Imaging: from Paired to Unpaired Training. CoRR (2019)
Nicholas Dwork, Gennifer T. Smith, Theodore Leng, John M. Pauly, Audrey K. Bowden
Automatically Determining the Confocal Parameters From OCT B-Scans for Quantification of the Attenuation Coefficients. IEEE Trans. Medical Imaging 38 (1) (2019)
Jeffrey J. Ma, Ukash Nakarmi, Cedric Yue Sik Kin, Christopher M. Sandino, Joseph Y. Cheng, Ali B. Syed, Peter Wei, John M. Pauly, Shreyas Vasanawala
Diagnostic Image Quality Assessment and Classification in Medical Imaging: Opportunities and Challenges. CoRR (2019)
Vineet Edupuganti, Morteza Mardani, Joseph Y. Cheng, Shreyas Vasanawala, John M. Pauly
VAE-GANs for Probabilistic Compressive Image Recovery: Uncertainty Analysis. CoRR (2019)
Morteza Mardani, Enhao Gong, Joseph Y. Cheng, Shreyas S. Vasanawala, Greg Zaharchuk, Lei Xing, John M. Pauly
Deep Generative Adversarial Neural Networks for Compressive Sensing MRI. IEEE Trans. Medical Imaging 38 (1) (2019)
Morteza Mardani, Qingyun Sun, Vardan Papyan, Shreyas Vasanawala, John M. Pauly, David L. Donoho
Degrees of Freedom Analysis of Unrolled Neural Networks. CoRR (2019)
Joseph Y. Cheng, Feiyu Chen, Christopher M. Sandino, Morteza Mardani, John M. Pauly, Shreyas S. Vasanawala
Compressed Sensing: From Research to Clinical Practice with Data-Driven Learning. CoRR (2019)
Jiahong Ouyang, Guanhua Wang, Enhao Gong, Kevin Chen, John M. Pauly, Greg Zaharchuk
Task-GAN: Improving Generative Adversarial Network for Image Reconstruction. MLMIR@MICCAI (2019)
Guanhua Wang, Enhao Gong, Suchandrima Banerjee, John M. Pauly, Greg Zaharchuk
Accelerated MRI Reconstruction with Dual-Domain Generative Adversarial Network. MLMIR@MICCAI (2019)
Neerav Dixit, Pascal P. Stang, John M. Pauly, Greig C. Scott
Thermo-Acoustic Ultrasound for Detection of RF-Induced Device Lead Heating in MRI. IEEE Trans. Medical Imaging 37 (2) (2018)
Morteza Mardani, Qingyun Sun, David L. Donoho, Vardan Papyan, Hatef Monajemi, Shreyas Vasanawala, John M. Pauly
Neural Proximal Gradient Descent for Compressive Imaging. NeurIPS (2018)
Liyue Shen, Katie S. Shpanskaya, Edward H. Lee, Emily McKenna, Maryam Maleki, Quin Lu, Safwan Halabi, John M. Pauly, Kristen W. Yeom
Deep Learning with Attention to Predict Gestational Age of the Fetal Brain. CoRR (2018)
Joseph Y. Cheng, Feiyu Chen, Marcus T. Alley, John M. Pauly, Shreyas S. Vasanawala
Highly Scalable Image Reconstruction using Deep Neural Networks with Bandpass Filtering. CoRR (2018)
Morteza Mardani, Qingyun Sun, Shreyas Vasawanala, Vardan Papyan, Hatef Monajemi, John M. Pauly, David L. Donoho
Neural Proximal Gradient Descent for Compressive Imaging. CoRR (2018)
Eric K. Gibbons, Patrick Le Roux, Shreyas S. Vasanawala, John M. Pauly, Adam B. Kerr
Robust Self-Calibrating nCPMG Acquisition: Application to Body Diffusion-Weighted Imaging. IEEE Trans. Medical Imaging 37 (1) (2018)
Jaeyeon Yoon, Enhao Gong, Itthi Chatnuntawech, Berkin Bilgic, Jin-Gu Lee, Woojin Jung, Jingyu Ko, Hosan Jung, Kawin Setsompop, Greg Zaharchuk, Eung-Yeop Kim, John M. Pauly, Jongho Lee
Quantitative susceptibility mapping using deep neural network: QSMnet. NeuroImage 179 (2018)
Junshen Xu, Enhao Gong, John M. Pauly, Greg Zaharchuk
200x Low-dose PET Reconstruction using Deep Learning. CoRR (2017)
Morteza Mardani, Hatef Monajemi, Vardan Papyan, Shreyas Vasanawala, David L. Donoho, John M. Pauly
Recurrent Generative Adversarial Networks for Proximal Learning and Automated Compressive Image Recovery. CoRR (2017)
Eric K. Gibbons, Patrick Le Roux, Shreyas S. Vasanawala, John M. Pauly, Adam B. Kerr
Body Diffusion Weighted Imaging Using Non-CPMG Fast Spin Echo. IEEE Trans. Medical Imaging 36 (2) (2017)
Morteza Mardani, Enhao Gong, Joseph Y. Cheng, Shreyas Vasanawala, Greg Zaharchuk, Marcus T. Alley, Neil Thakur, Song Han, William J. Dally, John M. Pauly, Lei Xing
Deep Generative Adversarial Networks for Compressed Sensing Automates MRI. CoRR (2017)
Morteza Mardani, Enhao Gong, Joseph Y. Cheng, John M. Pauly, Lei Xing
Recurrent generative adversarial neural networks for compressive imaging. CAMSAP (2017)
Kamal Aggarwal, Kiran Raj Joshi, Yashar Rajavi, Mazhareddin Taghivand, John M. Pauly, Ada S. Y. Poon, Greig C. Scott
A Millimeter-Wave Digital Link for Wireless MRI. IEEE Trans. Medical Imaging 36 (2) (2017)
Jonathan Y. Lu, Thomas Grafendorfer, Tao Zhang, Shreyas Vasanawala, Fraser Robb, John M. Pauly, Greig C. Scott
Depletion-Mode GaN HEMT Q-Spoil Switches for MRI Coils. IEEE Trans. Medical Imaging 35 (12) (2016)
Kangrong Zhu, Robert F. Dougherty, Hua Wu, Matthew J. Middione, Atsushi M. Takahashi, Tao Zhang, John M. Pauly, Adam B. Kerr
Hybrid-Space SENSE Reconstruction for Simultaneous Multi-Slice MRI. IEEE Trans. Medical Imaging 35 (8) (2016)
Gennifer T. Smith, Nicholas Dwork, Daniel O'Connor, Uzair Sikora, Kristen L. Lurie, John M. Pauly, Audrey K. Ellerbee
Automated, Depth-Resolved Estimation of the Attenuation Coefficient From Optical Coherence Tomography Data. IEEE Trans. Medical Imaging 34 (12) (2015)
Pascal P. Stang, Steven M. Conolly, Juan M. Santos, John M. Pauly, Greig C. Scott
Medusa: A Scalable MR Console Using USB. IEEE Trans. Medical Imaging 31 (2) (2012)
Peder E. Z. Larson, Adam B. Kerr, Galen Reed, Ralph E. Hurd, John Kurhanewicz, John M. Pauly, Daniel B. Vigneron
Generating Super Stimulated-Echoes in MRI and Their Application to Hyperpolarized C-13 Diffusion Metabolic Imaging. IEEE Trans. Medical Imaging 31 (2) (2012)
Kim Shultz, Pascal P. Stang, Adam B. Kerr, John M. Pauly, Greig C. Scott
RF Field Visualization of RF Ablation at the Larmor Frequency. IEEE Trans. Medical Imaging 31 (4) (2012)
Taek-Soo Kim, Jongho Lee, Jin Hyung Lee, Gary H. Glover, John M. Pauly
Analysis of the BOLD characteristics in pass-band bSSFP fMRI. Int. J. Imaging Syst. Technol. 22 (1) (2012)
Marta G. Zanchi, Pascal P. Stang, Adam B. Kerr, John M. Pauly, Greig C. Scott
Frequency-Offset Cartesian Feedback for MRI Power Amplifier Linearization. IEEE Trans. Medical Imaging 30 (2) (2011)
Shreyas Vasanawala, M. J. Murphy, Marcus T. Alley, P. Lai, Kurt Keutzer, John M. Pauly, Michael Lustig
Practical parallel imaging compressed sensing MRI: Summary of two years of experience in accelerating body MRI of pediatric patients. ISBI (2011)
Nikola Stikov, Lee M. Perry, Aviv Mezer, Elena I. Rykhlevskaia, Brian A. Wandell, John M. Pauly, Robert F. Dougherty
Bound pool fractions complement diffusion measures to describe white matter micro and macrostructure. NeuroImage 54 (2) (2011)
Tolga Çukur, Juan M. Santos, John M. Pauly, Dwight G. Nishimura
Variable-Density Parallel Imaging With Partially Localized Coil Sensitivities. IEEE Trans. Medical Imaging 29 (5) (2010)
Marta G. Zanchi, Ross Venook, John M. Pauly, Greig C. Scott
An Optically Coupled System for Quantitative Monitoring of MRI-Induced RF Currents Into Long Conductors. IEEE Trans. Medical Imaging 29 (1) (2010)
Uygar Sümbül, Juan M. Santos, John M. Pauly
Improved Time Series Reconstruction for Dynamic Magnetic Resonance Imaging. IEEE Trans. Medical Imaging 28 (7) (2009)
Uygar Sümbül, Juan M. Santos, John M. Pauly
A Practical Acceleration Algorithm for Real-Time Imaging. IEEE Trans. Medical Imaging 28 (12) (2009)
William Grissom, Kim Butts-Pauly, Michael Lustig, Viola Rieke, John M. Pauly, Nathan McDannold
Regularized Referenceless Temperature Estimation in PRF-Shift MR Thermometry. ISBI (2009)
Michael Lustig, Seung-Jean Kim, John M. Pauly
A Fast Method for Designing Time-Optimal Gradient Waveforms for Arbitrary k-Space Trajectories. IEEE Trans. Medical Imaging 27 (6) (2008)
Michael Lustig, David L. Donoho, Juan M. Santos, John M. Pauly
Compressed Sensing MRI. IEEE Signal Process. Mag. 25 (2) (2008)
Nathaniel I. Matter, Blaine Chronik, John M. Pauly, Albert Macovski, Steven M. Conolly, Greig C. Scott
Noise Performance of a Precision Pulsed Electromagnet Power Supply for Magnetic Resonance Imaging. IEEE Trans. Medical Imaging 27 (1) (2008)
L. Vidarsson, Charles H. Cunningham, G. E. Gold, John M. Pauly
-Selective Magnetization Preparation Pulses. IEEE Trans. Medical Imaging 26 (7) (2007)
Philip J. Beatty, Dwight G. Nishimura, John M. Pauly
Rapid gridding reconstruction with a minimal oversampling ratio. IEEE Trans. Medical Imaging 24 (6) (2005)
R. Christopher DeCharms, Kalina Christoff, Gary H. Glover, John M. Pauly, Susan Whitfield, John D. E. Gabrieli
Learned regulation of spatially localized brain activation using real-time fMRI. NeuroImage 21 (1) (2004)
Todd S. Sachs, Craig H. Meyer, John M. Pauly, Bob S. Hu, Dwight G. Nishimura, Albert Macovski
The Real-Time Interactive 3D-DVA for Robust Coronary MRA. IEEE Trans. Medical Imaging 19 (2) (2000)