Baris Turkbey

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 72

Top Topics

Medical Image Segmentation

Magnetic Resonance

Landmark Localization

Top Venues

Int. J. Comput. Assist. Radiol. Surg.

Medical Image Anal.

Publications

Ziliang Hong, Debesh Jha, Koushik Biswas, Zheyuan Zhang, Yury Velichko, Cemal Yazici, Temel Tirkes, Amir Borhani, Baris Turkbey, Alpay Medetalibeyoglu, Gorkem Durak, Ulas Bagci
Detection of Peri-Pancreatic Edema using Deep Learning and Radiomics Techniques. CoRR (2024)
Yufan He, Pengfei Guo, Yucheng Tang, Andriy Myronenko, Vishwesh Nath, Ziyue Xu, Dong Yang, Can Zhao, Benjamin Simon, Mason Belue, Stephanie A. Harmon, Baris Turkbey, Daguang Xu, Wenqi Li
VISTA3D: Versatile Imaging SegmenTation and Annotation model for 3D Computed Tomography. CoRR (2024)
Zheyuan Zhang, Elif Keles, Gorkem Durak, Yavuz Taktak, Onkar Susladkar, Vandan Gorade, Debesh Jha, Asli C. Ormeci, Alpay Medetalibeyoglu, Lanhong Yao, Bin Wang, Ilkin Sevgi Isler, Linkai Peng, Hongyi Pan, Camila Lopes Vendrami, Amir Bourhani, Yury Velichko, Boqing Gong, Concetto Spampinato, Ayis Pyrros, Pallavi Tiwari, Derk C. F. Klatte, Megan Engels, Sanne Hoogenboom, Candice W. Bolan, Emil Agarunov, Nassier Harfouch, Chenchan Huang, Marco J. Bruno, Ivo Schoots, Rajesh N. Keswani, Frank H. Miller, Tamas Gonda, Cemal Yazici, Temel Tirkes, Baris Turkbey, Michael B. Wallace, Ulas Bagci
Large-Scale Multi-Center CT and MRI Segmentation of Pancreas with Deep Learning. CoRR (2024)
Pouria Yazdian Anari, Fiona Obiezu, Nathan Lay, Fatemeh Dehghani Firouzabadi, Aditi Chaurasia, Mahshid Golagha, Shiva Singh, Fatemeh Homayounieh, Aryan Zahergivar, Stephanie A. Harmon, Evrim Turkbey, Rabindra Gautam, Kevin Ma, María Merino, Elizabeth C. Jones, Mark W. Ball, W. Marston Linehan, Baris Turkbey, Ashkan A. Malayeri
Using YOLO v7 to Detect Kidney in Magnetic Resonance Imaging: A Supervised Contrastive Learning. CoRR (2024)
Xin Zhu, Hongyi Pan, Yury Velichko, Adam B. Murphy, Ashley Ross, Baris Turkbey, Ahmet Enis Çetin, Ulas Bagci
A Probabilistic Hadamard U-Net for MRI Bias Field Correction. CoRR (2024)
Alex Chen, Nathan Lay, Stephanie A. Harmon, Kutsev Ozyoruk, Enis Yilmaz, Bradford J. Wood, Peter A. Pinto, Peter L. Choyke, Baris Turkbey
Location-based Radiology Report-Guided Semi-supervised Learning for Prostate Cancer Detection. CoRR (2024)
Sophia Ty, Fahmida Haque, Parth Desai, Nobuyuki Takahashi, Usamah Chaudhary, Benjamin Simon, Peter L. Choyke, Anish Thomas, Baris Turkbey, Stephanie A. Harmon
Automated Detection and Characterization of Small Cell Lung Cancer Liver Metastases on CT. AIME (2) (2024)
Zhijun Chen, Erolcan Sayar, Haoyue Zhang, Helen Richards, Lucas Liu, Baris Turkbey, Michael Haffner, Stephanie A. Harmon
A Sparse Convolutional Autoencoder for Joint Feature Extraction and Clustering of Metastatic Prostate Cancer Images. AIME (2) (2024)
Bin Wang, Hongyi Pan, Armstrong Aboah, Zheyuan Zhang, Elif Keles, Drew A. Torigian, Baris Turkbey, Elizabeth A. Krupinski, Jayaram K. Udupa, Ulas Bagci
GazeGNN: A Gaze-Guided Graph Neural Network for Chest X-ray Classification. WACV (2024)
Bin Wang, Hongyi Pan, Armstrong Aboah, Zheyuan Zhang, Ahmet Cetin, Drew A. Torigian, Baris Turkbey, Elizabeth A. Krupinski, Jayaram K. Udupa, Ulas Bagci
GazeGNN: A Gaze-Guided Graph Neural Network for Disease Classification. CoRR (2023)
Xi Fang, Xuanang Xu, James J. Xia, Thomas Sanford, Baris Turkbey, Sheng Xu, Bradford J. Wood, Pingkun Yan
Shape description losses for medical image segmentation. Mach. Vis. Appl. 34 (4) (2023)
Xinrui Song, Xuanang Xu, Sheng Xu, Baris Turkbey, Thomas Sanford, Bradford J. Wood, Pingkun Yan
Distance map supervised landmark localization for MR-TRUS registration. Medical Imaging: Image Processing (2023)
Xuanang Xu, Thomas Sanford, Baris Turkbey, Sheng Xu, Bradford J. Wood, Pingkun Yan
Polar transform network for prostate ultrasound segmentation with uncertainty estimation. Medical Image Anal. 78 (2022)
Pengfei Guo, Dong Yang, Ali Hatamizadeh, An Xu, Ziyue Xu, Wenqi Li, Can Zhao, Daguang Xu, Stephanie A. Harmon, Evrim Turkbey, Baris Turkbey, Bradford J. Wood, Francesca Patella, Elvira Stellato, Gianpaolo Carrafiello, Vishal M. Patel, Holger R. Roth
Auto-FedRL: Federated Hyperparameter Optimization for Multi-institutional Medical Image Segmentation. CoRR (2022)
Ming Li, Nicole Varble, Baris Turkbey, Sheng Xu, Bradford J. Wood
Camera-based distance detection and contact tracing to monitor potential spread of COVID-19. Medical Imaging: Image Perception, Observer Performance, and Technology Assessment (2022)
Xinrui Song, Hanqing Chao, Xuanang Xu, Hengtao Guo, Sheng Xu, Baris Turkbey, Bradford J. Wood, Thomas Sanford, Ge Wang, Pingkun Yan
Cross-modal attention for multi-modal image registration. Medical Image Anal. 82 (2022)
Holger R. Roth, Ziyue Xu, Carlos Tor-Díez, Ramon Sanchez-Jacob, Jonathan Zember, Jose Molto, Wenqi Li, Sheng Xu, Baris Turkbey, Evrim Turkbey, Dong Yang, Ahmed Harouni, Nicola Rieke, Shishuai Hu, Fabian Isensee, Claire Tang, Qinji Yu, Jan Sölter, Tong Zheng, Vitali Liauchuk, Ziqi Zhou, Jan Hendrik Moltz, Bruno Oliveira, Yong Xia, Klaus H. Maier-Hein, Qikai Li, Andreas Husch, Luyang Zhang, Vassili Kovalev, Li Kang, Alessa Hering, João L. Vilaça, Mona Flores, Daguang Xu, Bradford J. Wood, Marius George Linguraru
Rapid artificial intelligence solutions in a pandemic - The COVID-19-20 Lung CT Lesion Segmentation Challenge. Medical Image Anal. 82 (2022)
Pengfei Guo, Dong Yang, Ali Hatamizadeh, An Xu, Ziyue Xu, Wenqi Li, Can Zhao, Daguang Xu, Stephanie A. Harmon, Evrim Turkbey, Baris Turkbey, Bradford J. Wood, Francesca Patella, Elvira Stellato, Gianpaolo Carrafiello, Vishal M. Patel, Holger R. Roth
Auto-FedRL: Federated Hyperparameter Optimization for Multi-institutional Medical Image Segmentation. ECCV (21) (2022)
Kevin C. Ma, Michael V. Green, Elaine M. Jagoda, Jürgen Seidel, Peter L. Choyke, Baris Turkbey, Stephanie A. Harmon
Deep learning vs. conventional methods for automatic quantification of total tumor radioactivity in positron projection images of mouse xenograft tumors. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging (2022)
Xinrui Song, Hanqing Chao, Sheng Xu, Baris Turkbey, Bradford J. Wood, Ge Wang, Pingkun Yan
Transformed Grid Distance Loss for Supervised Image Registration. WBIR (2022)
Xinrui Song, Xuanang Xu, Sheng Xu, Baris Turkbey, Bradford J. Wood, Thomas Sanford, Pingkun Yan
Distance Map Supervised Landmark Localization for MR-TRUS Registration. CoRR (2022)
Xuanang Xu, Thomas Sanford, Baris Turkbey, Sheng Xu, Bradford J. Wood, Pingkun Yan
Shadow-Consistent Semi-Supervised Learning for Prostate Ultrasound Segmentation. IEEE Trans. Medical Imaging 41 (6) (2022)
Xinrui Song, Hengtao Guo, Xuanang Xu, Hanqing Chao, Sheng Xu, Baris Turkbey, Bradford J. Wood, Ge Wang, Pingkun Yan
Cross-Modal Attention for MRI and Ultrasound Volume Registration. MICCAI (4) (2021)
Xinrui Song, Hengtao Guo, Xuanang Xu, Hanqing Chao, Sheng Xu, Baris Turkbey, Bradford J. Wood, Ge Wang, Pingkun Yan
Cross-modal Attention for MRI and Ultrasound Volume Registration. CoRR (2021)
Yingda Xia, Dong Yang, Wenqi Li, Andriy Myronenko, Daguang Xu, Hirofumi Obinata, Hitoshi Mori, Peng An, Stephanie A. Harmon, Evrim Turkbey, Baris Turkbey, Bradford J. Wood, Francesca Patella, Elvira Stellato, Gianpaolo Carrafiello, Anna Ierardi, Alan L. Yuille, Holger Roth
Auto-FedAvg: Learnable Federated Averaging for Multi-Institutional Medical Image Segmentation. CoRR (2021)
Ugur Demir, Ismail Irmakci, Elif Keles, Ahmet Topcu, Ziyue Xu, Concetto Spampinato, Sachin Jambawalikar, Evrim Turkbey, Baris Turkbey, Ulas Bagci
Information Bottleneck Attribution for Visual Explanations of Diagnosis and Prognosis. MLMI@MICCAI (2021)
Bo Du, Jiandong Liao, Baris Turkbey, Pingkun Yan
Multi-Task Learning for Registering Images With Large Deformation. IEEE J. Biomed. Health Informatics 25 (5) (2021)
Karthik V. Sarma, Stephanie A. Harmon, Thomas Sanford, Holger R. Roth, Ziyue Xu, Jesse Tetreault, Daguang Xu, Mona G. Flores, Alex G. Raman, Rushikesh Kulkarni, Bradford J. Wood, Peter L. Choyke, Alan Priester, Leonard S. Marks, Steven S. Raman, Dieter Enzmann, Baris Turkbey, William Speier, Corey W. Arnold
Federated learning improves site performance in multicenter deep learning without data sharing. J. Am. Medical Informatics Assoc. 28 (6) (2021)
Samira Masoudi, Sherif Mehralivand, Stephanie A. Harmon, Nathan Lay, Liza Lindenberg, Esther Mena, Peter A. Pinto, Deborah E. Citrin, James L. Gulley, Bradford J. Wood, William L. Dahut, Ravi A. Madan, Ulas Bagci, Peter L. Choyke, Baris Turkbey
Deep Learning Based Staging of Bone Lesions From Computed Tomography Scans. IEEE Access 9 (2021)
Zion Tsz Ho Tse, Sierra E. Hovet, Hongliang Ren, Tristan Barrett, Sheng Xu, Baris Turkbey, Bradford J. Wood
AI-Assisted CT as a Clinical and Research Tool for COVID-19. Frontiers Artif. Intell. 4 (2021)
Samira Masoudi, Stephanie A. Harmon, Sherif Mehralivand, Nathan Lay, Ulas Bagci, Bradford J. Wood, Peter A. Pinto, Peter L. Choyke, Baris Turkbey
No-Reference Image Quality Assessment Of T2-Weighted Magnetic Resonance Images In Prostate Cancer Patients. ISBI (2021)
Liyue Shen, Wentao Zhu, Xiaosong Wang, Lei Xing, John M. Pauly, Baris Turkbey, Stephanie Anne Harmon, Thomas Hogue Sanford, Sherif Mehralivand, Peter L. Choyke, Bradford J. Wood, Daguang Xu
Multi-Domain Image Completion for Random Missing Input Data. IEEE Trans. Medical Imaging 40 (4) (2021)
Dong Yang, Ziyue Xu, Wenqi Li, Andriy Myronenko, Holger R. Roth, Stephanie A. Harmon, Sheng Xu, Baris Turkbey, Evrim Turkbey, Xiaosong Wang, Wentao Zhu, Gianpaolo Carrafiello, Francesca Patella, Maurizio Cariati, Hirofumi Obinata, Hitoshi Mori, Kaku Tamura, Peng An, Bradford J. Wood, Daguang Xu
Federated semi-supervised learning for COVID region segmentation in chest CT using multi-national data from China, Italy, Japan. Medical Image Anal. 70 (2021)
Ugur Demir, Ismail Irmakci, Elif Keles, Ahmet Topcu, Ziyue Xu, Concetto Spampinato, Sachin Jambawalikar, Evrim Turkbey, Baris Turkbey, Ulas Bagci
Information Bottleneck Attribution for Visual Explanations of Diagnosis and Prognosis. CoRR (2021)
Xi Fang, Thomas Sanford, Baris Turkbey, Sheng Xu, Bradford J. Wood, Pingkun Yan
Division and Fusion: Rethink Convolutional Kernels for 3D Medical Image Segmentation. MLMI@MICCAI (2020)
Dong Yang, Ziyue Xu, Wenqi Li, Andriy Myronenko, Holger R. Roth, Stephanie A. Harmon, Sheng Xu, Baris Turkbey, Evrim Turkbey, Xiaosong Wang, Wentao Zhu, Gianpaolo Carrafiello, Francesca Patella, Maurizio Cariati, Hirofumi Obinata, Hitoshi Mori, Kaku Tamura, Peng An, Bradford J. Wood, Daguang Xu
Federated Semi-Supervised Learning for COVID Region Segmentation in Chest CT using Multi-National Data from China, Italy, Japan. CoRR (2020)
Samira Masoudi, Syed Muhammad Anwar, Stephanie A. Harmon, Peter L. Choyke, Baris Turkbey, Ulas Bagci
Adipose Tissue Segmentation in Unlabeled Abdomen MRI using Cross Modality Domain Adaptation. EMBC (2020)
Alireza Sedghi, Alireza Mehrtash, Amoon Jamzad, Amel Amalou, William M. Wells III, Tina Kapur, Jin Tae Kwak, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Sheng Xu, Purang Abolmaesumi, Parvin Mousavi
Improving detection of prostate cancer foci via information fusion of MRI and temporal enhanced ultrasound. Int. J. Comput. Assist. Radiol. Surg. 15 (7) (2020)
Samira Masoudi, Syed Muhammad Anwar, Stephanie A. Harmon, Peter L. Choyke, Baris Turkbey, Ulas Bagci
Adipose Tissue Segmentation in Unlabeled Abdomen MRI using Cross Modality Domain Adaptation. CoRR (2020)
Minh Nguyen Nhat To, Sandeep Sankineni, Sheng Xu, Baris Turkbey, Peter A. Pinto, Vanessa Moreno, María Merino, Bradford J. Wood, Jin Tae Kwak
Improving Dense Pixelwise Prediction of Epithelial Density Using Unsupervised Data Augmentation for Consistency Regularization. MICCAI (1) (2020)
Minh Nguyen Nhat To, Sandeep Sankineni, Sheng Xu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Vanessa Moreno, María Merino, Bradford J. Wood, Jin Tae Kwak
Deep Learning Framework for Epithelium Density Estimation in Prostate Multi-Parametric Magnetic Resonance Imaging. ISBI (2020)
Liyue Shen, Wentao Zhu, Xiaosong Wang, Lei Xing, John M. Pauly, Baris Turkbey, Stephanie Anne Harmon, Thomas Hogue Sanford, Sherif Mehralivand, Peter L. Choyke, Bradford J. Wood, Daguang Xu
Multi-Domain Image Completion for Random Missing Input Data. CoRR (2020)
Ling Zhang, Xiaosong Wang, Dong Yang, Thomas Sanford, Stephanie A. Harmon, Baris Turkbey, Bradford J. Wood, Holger Roth, Andriy Myronenko, Daguang Xu, Ziyue Xu
Generalizing Deep Learning for Medical Image Segmentation to Unseen Domains via Deep Stacked Transformation. IEEE Trans. Medical Imaging 39 (7) (2020)
Ming Li, Sheng Xu, Dumitru Mazilu, Baris Turkbey, Bradford J. Wood
Smartglasses/smartphone needle guidance AR system for transperineal prostate procedure. Medical Imaging: Image-Guided Procedures (2019)
Alireza Sedghi, Mehran Pesteie, Golara Javadi, Shekoofeh Azizi, Pingkun Yan, Jin Tae Kwak, Sheng Xu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Robert Rohling, Purang Abolmaesumi, Parvin Mousavi
Deep neural maps for unsupervised visualization of high-grade cancer in prostate biopsies. Int. J. Comput. Assist. Radiol. Surg. 14 (6) (2019)
Ling Zhang, Xiaosong Wang, Dong Yang, Thomas Sanford, Stephanie A. Harmon, Baris Turkbey, Holger Roth, Andriy Myronenko, Daguang Xu, Ziyue Xu
When Unseen Domain Generalization is Unnecessary? Rethinking Data Augmentation. CoRR (2019)
Naji Khosravan, Haydar Celik, Baris Turkbey, Elizabeth Jones, Bradford J. Wood, Ulas Bagci
A collaborative computer aided diagnosis (C-CAD) system with eye-tracking, sparse attentional model, and deep learning. Medical Image Anal. 51 (2019)
Rulon Mayer, Charles B. Simone II, William Skinner, Baris Turkbey, Peter L. Choyke
Pilot study for supervised target detection applied to spatially registered multiparametric MRI in order to non-invasively score prostate cancer. Comput. Biol. Medicine 94 (2018)
Shekoofeh Azizi, Pingkun Yan, Amir M. Tahmasebi, Peter A. Pinto, Bradford J. Wood, Jin Tae Kwak, Sheng Xu, Baris Turkbey, Peter L. Choyke, Parvin Mousavi, Purang Abolmaesumi
Learning from Noisy Label Statistics: Detecting High Grade Prostate Cancer in Ultrasound Guided Biopsy. MICCAI (4) (2018)
Nathan Lay, Yohannes Tsehay, Yohan Sumathipala, Ruida Cheng, Sonia Gaur, Clayton Smith, Adrian Barbu, Le Lu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Ronald M. Summers
A Decomposable Model for the Detection of Prostate Cancer in Multi-parametric MRI. MICCAI (2) (2018)
Shekoofeh Azizi, Nathan Van Woudenberg, Samira Sojoudi, Ming Li, Sheng Xu, Emran Mohammad Abu Anas, Pingkun Yan, Amir M. Tahmasebi, Jin Tae Kwak, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Parvin Mousavi, Purang Abolmaesumi
Toward a real-time system for temporal enhanced ultrasound-guided prostate biopsy. Int. J. Comput. Assist. Radiol. Surg. 13 (8) (2018)
Naji Khosravan, Haydar Celik, Baris Turkbey, Elizabeth Jones, Bradford J. Wood, Ulas Bagci
A Collaborative Computer Aided Diagnosis (C-CAD) System with Eye-Tracking, Sparse Attentional Model, and Deep Learning. CoRR (2018)
Qikui Zhu, Bo Du, Baris Turkbey, Peter L. Choyke, Pingkun Yan
Exploiting Interslice Correlation for MRI Prostate Image Segmentation, from Recursive Neural Networks Aspect. Complex. 2018 (2018)
Shekoofeh Azizi, Sharareh Bayat, Pingkun Yan, Amir Tahmasebi, Jin Tae Kwak, Sheng Xu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Parvin Mousavi, Purang Abolmaesumi
Deep Recurrent Neural Networks for Prostate Cancer Detection: Analysis of Temporal Enhanced Ultrasound. IEEE Trans. Medical Imaging 37 (12) (2018)
Minh Nguyen Nhat To, Quoc Dang Vu, Baris Turkbey, Peter L. Choyke, Jin Tae Kwak
Deep dense multi-path neural network for prostate segmentation in magnetic resonance imaging. Int. J. Comput. Assist. Radiol. Surg. 13 (11) (2018)
Abhishek Kolagunda, Scott Sorensen, Sherif Mehralivand, Philip Saponaro, Wayne Treible, Baris Turkbey, Peter A. Pinto, Peter L. Choyke, Chandra Kambhamettu
A Mixed Reality Guidance System for Robot Assisted Laparoscopic Radical Prostatectomy. OR 2.0/CARE/CLIP/ISIC@MICCAI (2018)
Yohannes Tsehay, Nathan Lay, Xiaosong Wang, Jin Tae Kwak, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Ronald M. Summers
Biopsy-guided learning with deep convolutional neural networks for Prostate Cancer detection on multiparametric MRI. ISBI (2017)
Qikui Zhu, Bo Du, Baris Turkbey, Peter L. Choyke, Pingkun Yan
Deeply-Supervised CNN for Prostate Segmentation. CoRR (2017)
Shekoofeh Azizi, Parvin Mousavi, Pingkun Yan, Amir M. Tahmasebi, Jin Tae Kwak, Sheng Xu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Purang Abolmaesumi
Transfer learning from RF to B-mode temporal enhanced ultrasound features for prostate cancer detection. Int. J. Comput. Assist. Radiol. Surg. 12 (7) (2017)
Yohannes K. Tsehay, Nathan S. Lay, Holger R. Roth, Xiaosong Wang, Jin Tae Kwak, Baris Turkbey, Peter A. Pinto, Bradford J. Wood, Ronald M. Summers
Convolutional neural network based deep-learning architecture for prostate cancer detection on multiparametric magnetic resonance images. Medical Imaging: Computer-Aided Diagnosis (2017)
Ruida Cheng, Holger R. Roth, Nathan Lay, Le Lu, Baris Turkbey, William Gandler, Evan S. McCreedy, Peter L. Choyke, Ronald M. Summers, Matthew J. McAuliffe
Automatic MR prostate segmentation by deep learning with holistically-nested networks. Medical Imaging: Image Processing (2017)
Qikui Zhu, Bo Du, Baris Turkbey, Peter L. Choyke, Pingkun Yan
Deeply-supervised CNN for prostate segmentation. IJCNN (2017)
Ruida Cheng, Nathan Lay, Francesca Mertan, Baris Turkbey, Holger R. Roth, Le Lu, William Gandler, Evan S. McCreedy, Thomas Pohida, Peter L. Choyke, Matthew J. McAuliffe, Ronald M. Summers
Deep learning with orthogonal volumetric HED segmentation and 3D surface reconstruction model of prostate MRI. ISBI (2017)
Shekoofeh Azizi, Farhad Imani, Jin Tae Kwak, Amir M. Tahmasebi, Sheng Xu, Pingkun Yan, Jochen Kruecker, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Parvin Mousavi, Purang Abolmaesumi
Classifying Cancer Grades Using Temporal Ultrasound for Transrectal Prostate Biopsy. MICCAI (1) (2016)
Naji Khosravan, Haydar Celik, Baris Turkbey, Ruida Cheng, Evan S. McCreedy, Matthew J. McAuliffe, Sandra Bednarova, Elizabeth Jones, Xinjian Chen, Peter L. Choyke, Bradford J. Wood, Ulas Bagci
Gaze2Segment: A Pilot Study for Integrating Eye-Tracking Technology into Medical Image Segmentation. MCV/BAMBI@MICCAI (2016)
Nathan Lay, Sabrina Freeman, Baris Turkbey, Ronald M. Summers
Detection of benign prostatic hyperplasia nodules in T2W MR images using fuzzy decision forest. Medical Imaging: Computer-Aided Diagnosis (2016)
Shekoofeh Azizi, Farhad Imani, Sahar Ghavidel, Amir M. Tahmasebi, Jin Tae Kwak, Sheng Xu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Parvin Mousavi, Purang Abolmaesumi
Detection of prostate cancer using temporal sequences of ultrasound data: a large clinical feasibility study. Int. J. Comput. Assist. Radiol. Surg. 11 (6) (2016)
Sheng Xu, Harsh K. Agarwal, Marcelino Bernardo, Reza Seifabadi, Baris Turkbey, Ari Partanen, Ayele H. Negussie, Neil D. Glossop, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood
An MRI guided system for prostate laser ablation with treatment planning and multi-planar temperature monitoring. Medical Imaging: Image-Guided Procedures (2016)
Jin Tae Kwak, Sandeep Sankineni, Sheng Xu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, María Merino, Bradford J. Wood
Correlation of magnetic resonance imaging with digital histopathology in prostate. Int. J. Comput. Assist. Radiol. Surg. 11 (4) (2016)
Ruida Cheng, Holger R. Roth, Le Lu, Shijun Wang, Baris Turkbey, William Gandler, Evan S. McCreedy, Harsh K. Agarwal, Peter L. Choyke, Ronald M. Summers, Matthew J. McAuliffe
Active appearance model and deep learning for more accurate prostate segmentation on MRI. Medical Imaging: Image Processing (2016)
Fereshteh Aalamifar, Reza Seifabadi, Marcelino Bernardo, Ayele H. Negussie, Baris Turkbey, María Merino, Peter A. Pinto, Arman Rahmim, Bradford J. Wood, Emad M. Boctor
Ultrasound Tomosynthesis: A New Paradigm for Quantitative Imaging of the Prostate. MICCAI (1) (2016)
Naji Khosravan, Haydar Celik, Baris Turkbey, Ruida Cheng, Evan S. McCreedy, Matthew J. McAuliffe, Sandra Bednarova, Elizabeth Jones, Xinjian Chen, Peter L. Choyke, Bradford J. Wood, Ulas Bagci
Gaze2Segment: A Pilot Study for Integrating Eye-Tracking Technology into Medical Image Segmentation. CoRR (2016)
Kevin M. Boehm, Shijun Wang, Karen E. Burtt, Baris Turkbey, Samuel Weisenthal, Peter A. Pinto, Peter L. Choyke, Bradford J. Wood, Nicholas Petrick, Berkman Sahiner, Ronald M. Summers
Efficient Hilbert transform-based alternative to Tofts physiological models for representing MRI dynamic contrast-enhanced images in computer-aided diagnosis of prostate cancer. Medical Imaging: Computer-Aided Diagnosis (2015)
Shekoofeh Azizi, Farhad Imani, Bo Zhuang, Amir M. Tahmasebi, Jin Tae Kwak, Sheng Xu, Nishant Uniyal, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Mehdi Moradi, Parvin Mousavi, Purang Abolmaesumi
Ultrasound-Based Detection of Prostate Cancer Using Automatic Feature Selection with Deep Belief Networks. MICCAI (2) (2015)
Pingkun Yan, Yihui Cao, Yuan Yuan, Baris Turkbey, Peter L. Choyke
Label Image Constrained Multiatlas Selection. IEEE Trans. Cybern. 45 (6) (2015)
Jin Tae Kwak, Sheng Xu, Peter A. Pinto, Baris Turkbey, Marcelino Bernardo, Peter L. Choyke, Bradford J. Wood
A multiview boosting approach to tissue segmentation. Medical Imaging: Digital Pathology (2014)
Ruida Cheng, Baris Turkbey, William Gandler, Harsh K. Agarwal, Vijay P. Shah, Alexandra Bokinsky, Evan S. McCreedy, Shijun Wang, Sandeep Sankineni, Marcelino Bernardo, Thomas Pohida, Peter L. Choyke, Matthew J. McAuliffe
Atlas based AAM and SVM model for fully automatic MRI prostate segmentation. EMBC (2014)
Nishant Uniyal, Farhad Imani, Amir M. Tahmasebi, Harsh K. Agarwal, Shyam Bharat, Pingkun Yan, Jochen Kruecker, Jin Tae Kwak, Sheng Xu, Bradford J. Wood, Peter A. Pinto, Baris Turkbey, Peter L. Choyke, Purang Abolmaesumi, Parvin Mousavi, Mehdi Moradi
Ultrasound-Based Predication of Prostate Cancer in MRI-guided Biopsy. CLIP@MICCAI (2014)
Meijuan Yang, Xuelong Li, Baris Turkbey, Peter L. Choyke, Pingkun Yan
Prostate Segmentation in MR Images Using Discriminant Boundary Features. IEEE Trans. Biomed. Eng. 60 (2) (2013)
Ruida Cheng, Marcelino Bernardo, Justin Senseney, Alexandra Bokinsky, William Gandler, Baris Turkbey, Thomas Pohida, Peter L. Choyke, Matthew J. McAuliffe
Segmentation and surface reconstruction model of prostate MRI to improve prostate cancer diagnosis. ISBI (2013)
Pingkun Yan, Wuxia Zhang, Baris Turkbey, Peter L. Choyke, Xuelong Li
Global structure constrained local shape prior estimation for medical image segmentation. Comput. Vis. Image Underst. 117 (9) (2013)
Peter Liu, Shijun Wang, Baris Turkbey, Kinzya Grant, Peter A. Pinto, Peter L. Choyke, Bradford J. Wood, Ronald M. Summers
A prostate cancer computer-aided diagnosis system using multimodal magnetic resonance imaging and targeted biopsy labels. Medical Imaging: Computer-Aided Diagnosis (2013)
Ruida Cheng, Baris Turkbey, Justin Senseney, Marcelino Bernardo, Alexandra Bokinsky, William Gandler, Evan S. McCreedy, Thomas Pohida, Peter L. Choyke, Matthew J. McAuliffe
2D registration guided models for semi-automatic MRI prostate segmentation. Medical Imaging: Image Processing (2013)
Shijun Wang, Peter Liu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Ronald M. Summers
Gaussian Process Inference for Estimating Pharmacokinetic Parameters of Dynamic Contrast-Enhanced MR Images. MICCAI (3) (2012)
Amir M. Tahmasebi, Reza Sharifi, Harsh K. Agarwal, Baris Turkbey, Marcelino Bernardo, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Jochen Kruecker
A statistical model-based technique for accounting for prostate gland deformation in endorectal coil-based MR imaging. EMBC (2012)
Muqing Lin, Vijay Parthasarathy, Harsh K. Agarwal, Peter L. Choyke, Baris Turkbey, Tobias Klinder, Jochen Kruecker
An elastic registration framework to estimate prostate deformation in endorectal MR scans. Medical Imaging: Image-Guided Procedures (2012)
Yin Yin, Sergei V. Fotin, Senthil Periaswamy, Justin Kunz, Hrishikesh Haldankar, Naira Muradyan, Baris Turkbey, Peter L. Choyke
Fully automated 3D prostate central gland segmentation in MR images: a LOGISMOS based approach. Medical Imaging: Image Processing (2012)
Sergei V. Fotin, Yin Yin, Senthil Periaswamy, Justin Kunz, Hrishikesh Haldankar, Naira Muradyan, François Cornud, Baris Turkbey, Peter L. Choyke
Normalized gradient fields cross-correlation for automated detection of prostate in magnetic resonance images. Medical Imaging: Image Processing (2012)
Yin Yin, Sergei V. Fotin, Senthil Periaswamy, Justin Kunz, Hrishikesh Haldankar, Naira Muradyan, François Cornud, Baris Turkbey, Peter L. Choyke
Fully automated prostate segmentation in 3D MR based on normalized gradient fields cross-correlation initialization and LOGISMOS refinement. Medical Imaging: Image Processing (2012)
Yihui Cao, Yuan Yuan, Xuelong Li, Baris Turkbey, Peter L. Choyke, Pingkun Yan
Segmenting Images by Combining Selected Atlases on Manifold. MICCAI (3) (2011)
Pingkun Yan, Sheng Xu, Baris Turkbey, Jochen Kruecker
Adaptively Learning Local Shape Statistics for Prostate Segmentation in Ultrasound. IEEE Trans. Biomed. Eng. 58 (3) (2011)
Sheng Xu, Baris Turkbey, Jochen Kruecker, Pingkun Yan, Julia Locklin, Peter A. Pinto, Peter L. Choyke, Bradford J. Wood
Multi-parametric MRI-pathologic correlation of prostate cancer using tracked biopsies. Medical Imaging: Image-Guided Procedures (2010)
Samuel Kadoury, Pingkun Yan, Sheng Xu, Neil D. Glossop, Peter L. Choyke, Baris Turkbey, Peter A. Pinto, Bradford J. Wood, Jochen Kruecker
Realtime TRUS/MRI Fusion Targeted-Biopsy for Prostate Cancer: A Clinical Demonstration of Increased Positive Biopsy Rates. Prostate Cancer Imaging (2010)
Pingkun Yan, Sheng Xu, Baris Turkbey, Jochen Kruecker
Discrete Deformable Model Guided by Partial Active Shape Model for TRUS Image Segmentation. IEEE Trans. Biomed. Eng. 57 (5) (2010)
Pingkun Yan, Sheng Xu, Baris Turkbey, Jochen Kruecker
Segmenting TRUS video sequences using local shape statistics. Medical Imaging: Image-Guided Procedures (2010)
Pingkun Yan, Sheng Xu, Baris Turkbey, Jochen Kruecker
Optimal search guided by partial active shape model for prostate segmentation in TRUS images. Medical Imaging: Image-Guided Procedures (2009)