Chiara Pastrello

Publication Activity (10 Years)

Years Active: 2013-2023
Publications (10 Years): 17

Top Topics

Molecular Interactions

Automatic Image Annotation

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Anne-Christin Hauschild, Chiara Pastrello, Gitta Kirana Anindya Ekaputeri, Dylan Bethune-Waddell, Mark Abovsky, Zuhaib Ahmed, Max Kotlyar, Richard Lu, Igor Jurisica
MirDIP 5.2: tissue context annotation and novel microRNA curation. Nucleic Acids Res. 51 (D1) (2023)
Serene W. H. Wong, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica
: fast unique dense region detection and its application to lung cancer. Bioinform. 39 (8) (2023)
Giuseppe Agapito, Chiara Pastrello, Yun Niu, Igor Jurisica
Pathway integration and annotation: building a puzzle with non-matching pieces and no reference picture. Briefings Bioinform. 23 (5) (2022)
Max Kotlyar, Chiara Pastrello, Zuhaib Ahmed, Justin Chee, Zofia Varyova, Igor Jurisica
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis. Nucleic Acids Res. 50 (D1) (2022)
Tomás Tokár, Chiara Pastrello, Mark Abovsky, Sara Rahmati, Igor Jurisica
miRAnno - network-based functional microRNA annotation. Bioinform. 38 (2) (2022)
Giuseppe Agapito, Chiara Pastrello, Igor Jurisica
Comprehensive pathway enrichment analysis workflows: COVID-19 case study. Briefings Bioinform. 22 (2) (2021)
Sara Rahmati, Mark Abovsky, Chiara Pastrello, Max Kotlyar, Richard Lu, Christian A. Cumbaa, Proton Rahman, Vinod Chandran, Igor Jurisica
pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species. Nucleic Acids Res. 48 (Database-Issue) (2020)
Giuseppe Agapito, Chiara Pastrello, Pietro Hiram Guzzi, Igor Jurisica, Mario Cannataro
BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways. Bioinform. 36 (15) (2020)
Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, K. Panneerselvam, Simona Panni, N. Rahimzadeh, Sylvie Ricard-Blum, Lukasz Salwínski, Anjali Shrivastava, Gianni Cesareni, M. Pellegrini, Sandra E. Orchard, Igor Jurisica, Henning Hermjakob, Pablo Porras
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions. Database J. Biol. Databases Curation 2020 (2020)
Tomás Tokár, Chiara Pastrello, Igor Jurisica
GSOAP: a tool for visualization of gene set over-representation analysis. Bioinform. 36 (9) (2020)
Max Kotlyar, Chiara Pastrello, Zara Malik, Igor Jurisica
IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species. Nucleic Acids Res. 47 (Database-Issue) (2019)
Serene W. H. Wong, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica
SDREGION: Fast Spotting of Changing Communities in Biological Networks. KDD (2018)
Tomás Tokár, Chiara Pastrello, Andrea E. M. Rossos, Mark Abovsky, Anne-Christin Hauschild, Mike Tsay, Richard Lu, Igor Jurisica
mirDIP 4.1 - integrative database of human microRNA target predictions. Nucleic Acids Res. 46 (Database-Issue) (2018)
Sara Rahmati, Mark Abovsky, Chiara Pastrello, Igor Jurisica
pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis. Nucleic Acids Res. 45 (Database-Issue) (2017)
Max Kotlyar, Chiara Pastrello, Nicholas Sheahan, Igor Jurisica
Integrated interactions database: tissue-specific view of the human and model organism interactomes. Nucleic Acids Res. 44 (Database-Issue) (2016)
Andrea Vargas, Marc Angeli, Chiara Pastrello, Rosanne McQuaid, Han Li, Andrea Jurisicova, Igor Jurisica
Robust quantitative scratch assay. Bioinform. 32 (9) (2016)
Kristen Fortney, Joshua Griesman, Max Kotlyar, Chiara Pastrello, Marc Angeli, Ming-Sound Tsao, Igor Jurisica
Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data. PLoS Comput. Biol. 11 (3) (2015)
Chiara Pastrello, David Otasek, Kristen Fortney, Giuseppe Agapito, Mario Cannataro, Elize Shirdel, Igor Jurisica
Visual Data Mining of Biological Networks: One Size Does Not Fit All. PLoS Comput. Biol. 9 (1) (2013)