Simona E. Rombo

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 30

Top Topics

Genomic Sequences

Doctoral Consortium

Neighborhood Search

Top Venues

Briefings Bioinform.

Publications

Mariella Bonomo, Simona E. Rombo
Neighborhood based computational approaches for the prediction of lncRNA-disease associations. BMC Bioinform. 25 (1) (2024)
Mariella Bonomo, Simona E. Rombo, Filippo Rotolo
Prediction of User-Brand Associations Based on Sentiment Analysis. EDBT/ICDT Workshops (2023)
Adam Przybylek, Aleksandra Karpus, Allel Hadjali, Anton Dignös, Carmem S. Hara, Danae Pla Karidi, Ester Zumpano, Fabio Persia, Genoveva Vargas-Solar, George Papastefanatos, Giancarlo Sperlì, Giorgos Giannopoulos, Ivan Lukovic, Julien Aligon, Manolis Terrovitis, Marek Grzegorowski, Mariella Bonomo, Mirian Halfeld Ferrari Alves, Nicolas Labroche, Paul Monsarrat, Richard Chbeir, Sana Sellami, Seshu Tirupathi, Simona E. Rombo, Slavica Kordic, Sonja Ristic, Tommaso Di Noia, Torben Bach Pedersen, Vincenzo Moscato
Databases and Information Systems: Contributions from ADBIS 2023 Workshops and Doctoral Consortium. ADBIS (Short Papers) (2023)
Fabio Fassetti, Simona E. Rombo, Cristina Serrao
Discriminative pattern discovery for the characterization of different network populations. Bioinform. 39 (4) (2023)
Mariella Bonomo, Raffaele Giancarlo, Daniele Greco, Simona E. Rombo
Topological ranks reveal functional knowledge encoded in biological networks: a comparative analysis. Briefings Bioinform. 23 (3) (2022)
Lorenzo Di Rocco, Umberto Ferraro Petrillo, Simona E. Rombo
DIAMIN: a software library for the distributed analysis of large-scale molecular interaction networks. BMC Bioinform. 23 (1) (2022)
Simone Contini, Simona E. Rombo
A Collaborative Filtering Approach for Drug Repurposing. ADBIS (Short Papers) (2022)
Ylenia Galluzzo, Raffaele Giancarlo, Mario Randazzo, Simona E. Rombo
Burrows Wheeler Transform on a Large Scale: Algorithms Implemented in Apache Spark. CoRR (2021)
Simona E. Rombo, Domenico Ursino
Integrative bioinformatics and omics data source interoperability in the next-generation sequencing era - Editorial. Briefings Bioinform. 22 (1) (2021)
Mariella Bonomo, Armando La Placa, Simona E. Rombo
Prediction of lncRNA-Disease Associations from Tripartite Graphs. Poly/DMAH@VLDB (2020)
Mariella Bonomo, Armando La Placa, Simona E. Rombo
Identifying the k Best Targets for an Advertisement Campaign via Online Social Networks. KDIR (2020)
Mario Randazzo, Simona E. Rombo
A Big Data Approach for Sequences Indexing on the Cloud via Burrows Wheeler Transform. CoRR (2020)
Mario Randazzo, Simona E. Rombo
A Big Data Approach for Sequences Indexing on the Cloud via Burrows Wheeler Transform. AAI4H@ECAI (2020)
Mariella Bonomo, Armando La Placa, Simona E. Rombo
Identifying the k Best Targets for an Advertisement Campaign via Online Social Networks. CoRR (2020)
Mariella Bonomo, Gaspare Ciaccio, Andrea De Salve, Simona E. Rombo
Customer recommendation based on profile matching and customized campaigns in on-line social networks. ASONAM (2019)
Mariella Bonomo, Gaspare Ciaccio, Andrea De Salve, Simona E. Rombo
A Semantic Approach for User-Brand Targeting in On-Line Social Networks. CoRR (2019)
Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
DNA combinatorial messages and Epigenomics: The case of chromatin organization and nucleosome occupancy in eukaryotic genomes. Theor. Comput. Sci. 792 (2019)
Fabio Fassetti, Claudia Giallombardo, Ofelia Leone, Luigi Palopoli, Simona E. Rombo, Adolfo Saiardi
FEDRO: a software tool for the automatic discovery of candidate ORFs in plants with c →u RNA editing. BMC Bioinform. (4) (2019)
Umberto Ferraro Petrillo, Mara Sorella, Giuseppe Cattaneo, Raffaele Giancarlo, Simona E. Rombo
Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics. BMC Bioinform. (4) (2019)
Claudia Giallombardo, Salvatore Morfea, Simona E. Rombo
An Integrative Framework for the Construction of Big Functional Networks. BIBM (2018)
Angelo Furfaro, Simona E. Rombo
Efficient Classification of Digital Images based on Pattern-features. PhyCS (2018)
Umberto Ferraro Petrillo, Mara Sorella, Giuseppe Cattaneo, Raffaele Giancarlo, Simona E. Rombo
Analyzing Big Datasets of Genomic Sequences: Fast and Scalable Collection of k-mer Statistics. CoRR (2018)
Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
In vitro versus in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes. Bioinform. 34 (20) (2018)
Cinzia Pizzi, Mattia Ornamenti, Simone Spangaro, Simona E. Rombo, Laxmi Parida
Efficient Algorithms for Sequence Analysis with Entropic Profiles. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (1) (2018)
Udo Bub, Ajantha Dahanayake, Jérôme Darmont, Claudia Diamantini, Fabio Fassetti, Eduardo Fermé, Nadia Kabachi, Ilaria Matteucci, Bálint Molnár, Sham Navathe, Ermelinda Oro, Marinella Petrocchi, Simona E. Rombo, Massimo Ruffolo, Angelo Spognardi, Bernhard Thalheim, Domenico Ursino
Contributions from ADBIS 2018 Workshops. ADBIS (Short Papers and Workshops) (2018)
Angelo Furfaro, Maria Carmela Groccia, Simona E. Rombo
2D Motif Basis Applied to the Classification of Digital Images. Comput. J. 60 (7) (2017)
Simona E. Rombo, Filippo Utro
Foreword: Algorithms, Strings and Theoretical Approaches in the Big Data Era - Special Issue in Honor of the 60th Birthday of Professor Raffaele Giancarlo. Theor. Comput. Sci. 698 (2017)
Fabio Fassetti, Claudia Giallombardo, Ofelia Leone, Luigi Palopoli, Simona E. Rombo, Pierluigi Ruffolo, Adolfo Saiardi
Automatic simulation of RNA editing in plants for the identification of novel putative Open Reading Frames. PeerJ Prepr. 5 (2017)
Fabio Fassetti, Claudia Giallombardo, Ofelia Leone, Luigi Palopoli, Simona E. Rombo, Adolfo Saiardi
Discovering New Proteins in Plant Mitochondria by RNA Editing Simulation. BIOINFORMATICS (2016)
Fabio Fassetti, Simona E. Rombo, Cristina Serrao
Discovering discriminative graph patterns from gene expression data. SAC (2016)
Simona Panni, Simona E. Rombo
Searching for repetitions in biological networks: methods, resources and tools. Briefings Bioinform. 16 (1) (2015)
Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
nucleosome positioning. Bioinform. 31 (18) (2015)
Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies. Briefings Bioinform. 15 (3) (2014)
Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
Irredundant tandem motifs. Theor. Comput. Sci. 525 (2014)
Clara Pizzuti, Simona E. Rombo
Algorithms and tools for protein-protein interaction networks clustering, with a special focus on population-based stochastic methods. Bioinform. 30 (10) (2014)
Clara Pizzuti, Simona E. Rombo
An evolutionary restricted neighborhood search clustering approach for PPI networks. Neurocomputing 145 (2014)
Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences. WABI (2014)
Clara Pizzuti, Simona E. Rombo
Restricted Neighborhood Search Clustering Revisited: An Evolutionary Computation Perspective. PRIB (2013)
Angelo Furfaro, Maria Carmela Groccia, Simona E. Rombo
Image Classification Based on 2D Feature Motifs. FQAS (2013)
Clara Pizzuti, Simona E. Rombo
Experimental evaluation of topological-based fitness functions to detect complexes in PPI networks. GECCO (2012)
Simona E. Rombo
Extracting string motif bases for quorum higher than two. Theor. Comput. Sci. 460 (2012)
Clara Pizzuti, Simona E. Rombo, Elena Marchiori
Complex Detection in Protein-Protein Interaction Networks: A Compact Overview for Researchers and Practitioners. EvoBIO (2012)
Roberto De Virgilio, Simona E. Rombo
Approximate matching over biological RDF graphs. SAC (2012)
Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
Characterization and Extraction of Irredundant Tandem Motifs. SPIRE (2012)
Clara Pizzuti, Simona E. Rombo
A Coclustering Approach for Mining Large Protein-Protein Interaction Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (3) (2012)
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo
Asymmetric Comparison and Querying of Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (4) (2011)
Alessia Amelio, Alberto Apostolico, Simona E. Rombo
Image Compression by 2D Motif Basis. DCC (2011)
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo
"Master-Slave" Biological Network Alignment. ISBRA (2010)
Fabio Fassetti, Ofelia Leone, Luigi Palopoli, Simona E. Rombo, Adolfo Saiardi
IP6K Gene Discovery in Plant mtDNA. CIBB (2010)
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo
Asymmetric Global Alignment of Protein-Protein Interaction Graph Databases (Extended Abstract). SEBD (2010)
Francesco Bruno, Luigi Palopoli, Simona E. Rombo
New Trends in Graph Mining: Structural and Node-Colored Network Motifs. Int. J. Knowl. Discov. Bioinform. 1 (1) (2010)
Simona E. Rombo
Optimal extraction of motif patterns in 2D. Inf. Process. Lett. 109 (17) (2009)
Luca Miceli, Luigi Palopoli, Simona E. Rombo, Giorgio Terracina, Giuseppe Tradigo, Pierangelo Veltri
Experimental Evaluation of Protein Secondary Structure Predictors. ICCS (1) (2009)
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
A technique to search for functional similarities in protein-protein interaction networks. Int. J. Data Min. Bioinform. 3 (4) (2009)
Luigi Palopoli, Simona E. Rombo, Giorgio Terracina, Giuseppe Tradigo, Pierangelo Veltri
Improving protein secondary structure predictions by prediction fusion. Inf. Fusion 10 (3) (2009)
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
Extracting similar sub-graphs across PPI networks. ISCIS (2009)
Clara Pizzuti, Simona E. Rombo
Multi-functional Protein Clustering in PPI Networks . BIRD (2008)
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
Singling out functional similarities in graph databases. SEBD (2008)
Alberto Apostolico, Laxmi Parida, Simona E. Rombo
Motif patterns in 2D. Theor. Comput. Sci. 390 (1) (2008)
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
Protein-Protein Interaction Network Querying by a "Focus and Zoom" Approach. BIRD (2008)
Clara Pizzuti, Simona E. Rombo
Discovering meaningful protein-protein interaction modules by a co-clustering based approach. SEBD (2008)
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
GRAPPIN: Bipartite GRAph Based Protein-Protein Interaction Network Similarity Search. BIBM (2007)
Clara Pizzuti, Simona E. Rombo
: A Co-clustering Based Approach to Analyze Protein-Protein Interaction Networks. IDEAL (2007)
Fabrizio Angiulli, Valeria Fionda, Simona E. Rombo
Protein Data Condensation for Effective Quaternary Structure Classification. IDEAL (2007)
Luigi Palopoli, Simona E. Rombo, Giorgio Terracina, Giuseppe Tradigo, Pierangelo Veltri
JSSPrediction: a Framework to Predict Protein Secondary Structures Using Integration. CBMS (2006)
Luigi Palopoli, Simona E. Rombo, Giorgio Terracina
Flexible Pattern Discovery with (Extended) Disjunctive Logic Programming. ISMIS (2005)
Pasquale Grimaldi, Simona E. Rombo, Giorgio Terracina, Luigi Palopoli
Derivazione efficiente di pattern strutturati frequenti da database di natura biologica. SEBD (2004)
Simona E. Rombo, Giorgio Terracina
Discovering Representative Models in Large Time Series Databases. FQAS (2004)
Francesco Buccafurri, Gianluca Lax, Simona E. Rombo
Riduzione del traffico nei sistemi P2P: un approccio semantico. SEBD (2004)