Cinzia Pizzi

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 20

Top Topics

Hamming Distance

Locality Sensitive

Order Preserving

Genomic Sequences

Top Venues

Theor. Comput. Sci.

J. Comput. Biol.

Publications

Eleonora Mian, Enrico Petrucci, Cinzia Pizzi, Matteo Comin
Efficient Hashing of Multiple Spaced Seeds with Application. BIOINFORMATICS (2023)
Francesco Andreace, Cinzia Pizzi, Matteo Comin
MetaProb 2: Metagenomic Reads Binning Based on Assembly Using Minimizers and K-Mers Statistics. J. Comput. Biol. 28 (11) (2021)
Matteo Comin, Barbara Di Camillo, Cinzia Pizzi, Fabio Vandin
Comparison of microbiome samples: methods and computational challenges. Briefings Bioinform. 22 (1) (2021)
Enrico Petrucci, Laurent Noé, Cinzia Pizzi, Matteo Comin
Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing. J. Comput. Biol. 27 (2) (2020)
Leonardo Pellegrina, Cinzia Pizzi, Fabio Vandin
Fast Approximation of Frequent k-Mers and Applications to Metagenomics. J. Comput. Biol. 27 (4) (2020)
Francesco Andreace, Cinzia Pizzi, Matteo Comin
MetaProb 2: Improving Unsupervised Metagenomic Binning with Efficient Reads Assembly Using Minimizers. ICCABS (2020)
Enrico Petrucci, Laurent Noé, Cinzia Pizzi, Matteo Comin
Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing. ISBRA (2019)
Leonardo Pellegrina, Cinzia Pizzi, Fabio Vandin
Fast Approximation of Frequent k-mers and Applications to Metagenomics. RECOMB (2019)
Samuele Girotto, Matteo Comin, Cinzia Pizzi
FSH: fast spaced seed hashing exploiting adjacent hashes. Algorithms Mol. Biol. 13 (1) (2018)
Cinzia Pizzi, Mattia Ornamenti, Simone Spangaro, Simona E. Rombo, Laxmi Parida
Efficient Algorithms for Sequence Analysis with Entropic Profiles. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (1) (2018)
Francesco Carbone, Angelo Cenedese, Cinzia Pizzi
Consensus-based anomaly detection for efficient heating management. SmartWorld/SCALCOM/UIC/ATC/CBDCom/IOP/SCI (2017)
Umberto Ferraro Petrillo, Concettina Guerra, Cinzia Pizzi
A new distributed alignment-free approach to compare whole proteomes. Theor. Comput. Sci. 698 (2017)
Samuele Girotto, Matteo Comin, Cinzia Pizzi
Fast Spaced Seed Hashing. WABI (2017)
Samuele Girotto, Matteo Comin, Cinzia Pizzi
Binning metagenomic reads with probabilistic sequence signatures based on spaced seeds. CIBCB (2017)
Samuele Girotto, Matteo Comin, Cinzia Pizzi
Metagenomic reads binning with spaced seeds. Theor. Comput. Sci. 698 (2017)
Mattia Samory, Cinzia Pizzi, Enoch Peserico
How User Condition Affects Community Dynamics in a Forum on Autism. ICWSM (2017)
Alberto Apostolico, Concettina Guerra, Gad M. Landau, Cinzia Pizzi
Sequence similarity measures based on bounded hamming distance. Theor. Comput. Sci. 638 (2016)
Cinzia Pizzi
MissMax: alignment-free sequence comparison with mismatches through filtering and heuristics. Algorithms Mol. Biol. 11 (2016)
Samuele Girotto, Matteo Comin, Cinzia Pizzi
Higher recall in metagenomic sequence classification exploiting Overlapping Reads. ICCABS (2016)
Samuele Girotto, Cinzia Pizzi, Matteo Comin
MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures. Bioinform. 32 (17) (2016)
Cinzia Pizzi
A Filtering Approach for Alignment-Free Biosequences Comparison with Mismatches. WABI (2015)
Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
Irredundant tandem motifs. Theor. Comput. Sci. 525 (2014)
Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences. WABI (2014)
Alberto Apostolico, Concettina Guerra, Cinzia Pizzi
Alignment Free Sequence Similarity with Bounded Hamming Distance. DCC (2014)
Alberto Apostolico, Péter L. Erdös, Ervin Györi, Zsuzsanna Lipták, Cinzia Pizzi
Efficient algorithms for the periodic subgraphs mining problem. J. Discrete Algorithms 17 (2012)
Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
Characterization and Extraction of Irredundant Tandem Motifs. SPIRE (2012)
Cinzia Pizzi, Pasi Rastas, Esko Ukkonen
Finding Significant Matches of Position Weight Matrices in Linear Time. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (1) (2011)
Alberto Apostolico, Manuel Barbares, Cinzia Pizzi
Speedup for a periodic subgraph miner. Inf. Process. Lett. 111 (11) (2011)
Alberto Apostolico, Cinzia Pizzi, Esko Ukkonen
Efficient algorithms for the discovery of gapped factors. Algorithms Mol. Biol. 6 (2011)
Cinzia Pizzi
Efficient computation of statistics for words with mismatches. Structure Discovery in Biology: Motifs, Networks & Phylogenies (2010)
Cinzia Pizzi, Mauro Bianco
Expectation of Strings with Mismatches under Markov Chain Distribution. SPIRE (2009)
Cinzia Pizzi
k-difference matching in amortized linear time for all the words in a text. Theor. Comput. Sci. 410 (8-10) (2009)
Janne H. Korhonen, Petri Martinmäki, Cinzia Pizzi, Pasi Rastas, Esko Ukkonen
MOODS: fast search for position weight matrix matches in DNA sequences. Bioinform. 25 (23) (2009)
Cinzia Pizzi, Esko Ukkonen
Fast profile matching algorithms - A survey. Theor. Comput. Sci. 395 (2-3) (2008)
Alberto Apostolico, Cinzia Pizzi
Scoring Unusual Words with Varying Mismatch Errors. Math. Comput. Sci. 1 (4) (2008)
Cinzia Pizzi, Pasi Rastas, Esko Ukkonen
Fast Search Algorithms for Position Specific Scoring Matrices. BIRD (2007)
Alberto Apostolico, Cinzia Pizzi
Motif discovery by monotone scores. Discret. Appl. Math. 155 (6-7) (2007)
Alberto Apostolico, Cinzia Pizzi
On the Monotonicity of the String Correction Factor for Words with Mismatches. Combinatorial and Algorithmic Foundations of Pattern and Association Discovery (2006)
Stefania Bortoluzzi, Alessandro Coppe, Andrea Bisognin, Cinzia Pizzi, Gian Antonio Danieli
A multistep bioinformatic approach detects putative regulatory elements in gene promoters. BMC Bioinform. 6 (2005)
Alberto Apostolico, Cinzia Pizzi, Giorgio Satta
Optimal Discovery of Subword Associations in Strings. Discovery Science (2004)
Alberto Apostolico, Cinzia Pizzi
Monotone Scoring of Patterns with Mismatches: (Extended Abstract). WABI (2004)