Pasi Rastas

Publication Activity (10 Years)

Years Active: 2004-2020
Publications (10 Years): 4

Top Topics

Assembly Systems

Top Venues

Algorithms Mol. Biol.

Publications

Pasi Rastas
Lep-Anchor: automated construction of linkage map anchored haploid genomes. Bioinform. 36 (8) (2020)
Riku Walve, Pasi Rastas, Leena Salmela
Kermit: linkage map guided long read assembly. Algorithms Mol. Biol. 14 (1) (2019)
Riku Walve, Pasi Rastas, Leena Salmela
Kermit: Guided Long Read Assembly using Coloured Overlap Graphs. WABI (2018)
Pasi Rastas
Lep-MAP3: robust linkage mapping even for low-coverage whole genome sequencing data. Bioinform. 33 (23) (2017)
Pasi Rastas, Lars Paulin, Ilkka Hanski, Rainer Lehtonen, Petri Auvinen
Lep-MAP: fast and accurate linkage map construction for large SNP datasets. Bioinform. 29 (24) (2013)
Cinzia Pizzi, Pasi Rastas, Esko Ukkonen
Finding Significant Matches of Position Weight Matrices in Linear Time. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (1) (2011)
Janne H. Korhonen, Petri Martinmäki, Cinzia Pizzi, Pasi Rastas, Esko Ukkonen
MOODS: fast search for position weight matrix matches in DNA sequences. Bioinform. 25 (23) (2009)
Pasi Rastas
A General Framework for Local Pairwise Alignment Statistics with Gaps. WABI (2009)
Pasi Rastas, Jussi Kollin, Mikko Koivisto
Fast Bayesian Haplotype Inference Via Context Tree Weighting. WABI (2008)
Pasi Rastas, Esko Ukkonen
Haplotype Inference Via Hierarchical Genotype Parsing. WABI (2007)
Cinzia Pizzi, Pasi Rastas, Esko Ukkonen
Fast Search Algorithms for Position Specific Scoring Matrices. BIRD (2007)
Pasi Rastas, Mikko Koivisto, Heikki Mannila, Esko Ukkonen
A Hidden Markov Technique for Haplotype Reconstruction. WABI (2005)
Mikko Koivisto, Pasi Rastas, Esko Ukkonen
Recombination Systems. Theory Is Forever (2004)
Mikko Koivisto, Teemu Kivioja, Heikki Mannila, Pasi Rastas, Esko Ukkonen
Hidden Markov Modelling Techniques for Haplotype Analysis. ALT (2004)