Stefania Bortoluzzi

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 7

Top Topics

Differential Expression

Statistical Methods

Top Venues

Briefings Bioinform.

Publications

Anna Dal Molin, Caterina Tretti Parenzan, Enrico Gaffo, Cristina Borin, Elena Boldrin, Lueder H. Meyer, Geertruij te Kronnie, Silvia Bresolin, Stefania Bortoluzzi
rearrangements by the new software CircFusion. Briefings Bioinform. 24 (1) (2023)
Alessia Buratin, Stefania Bortoluzzi, Enrico Gaffo
Systematic benchmarking of statistical methods to assess differential expression of circular RNAs. Briefings Bioinform. 24 (1) (2023)
Enrico Gaffo, Alessia Buratin, Anna Dal Molin, Stefania Bortoluzzi
Sensitive, reliable and robust circRNA detection from RNA-seq with CirComPara2. Briefings Bioinform. 23 (1) (2022)
Anna Dal Molin, Enrico Gaffo, Valeria Difilippo, Alessia Buratin, Caterina Tretti Parenzan, Silvia Bresolin, Stefania Bortoluzzi
CRAFT: a bioinformatics software for custom prediction of circular RNA functions. Briefings Bioinform. 23 (2) (2022)
Anna Dal Molin, Enrico Gaffo, Valeria Difilippo, Alessia Buratin, Caterina Tretti Parenzan, Silvia Bresolin, Stefania Bortoluzzi
Correction to: CRAFT a bioinformatics software for custom prediction of circular RNA functions. Briefings Bioinform. 23 (3) (2022)
Andrea Binatti, Silvia Bresolin, Stefania Bortoluzzi, Alessandro Coppe
iWhale: a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data. Briefings Bioinform. 22 (3) (2021)
Michele Bortolomeazzi, Enrico Gaffo, Stefania Bortoluzzi
A survey of software tools for microRNA discovery and characterization using RNA-seq. Briefings Bioinform. 20 (3) (2019)
Andrea Bisognin, Gabriele Sales, Alessandro Coppe, Stefania Bortoluzzi, Chiara Romualdi
: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update). Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Gabriele Sales, Alessandro Coppe, Andrea Bisognin, Marta Biasiolo, Stefania Bortoluzzi, Chiara Romualdi
MAGIA, a web-based tool for miRNA and Genes Integrated Analysis. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Marta Biasiolo, Mattia Forcato, Lino Possamai, Francesco Ferrari, Luca Agnelli, Marta Lionetti, Katia Todoerti, Antonino Neri, Massimo Marchiori, Stefania Bortoluzzi, Silvio Bicciato
Critical Analysis of Transcriptional and Post-Transcriptional Regulatory Networks in Multiple Myeloma. Pacific Symposium on Biocomputing (2010)
Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi
A-MADMAN: Annotation-based microarray data meta-analysis tool. BMC Bioinform. 10 (2009)
Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli, Silvio Bicciato
Novel definition files for human GeneChips based on GeneAnnot. BMC Bioinform. 8 (2007)
Alessandro Coppe, Gian Antonio Danieli, Stefania Bortoluzzi
REEF: searching REgionally Enriched Features in genomes. BMC Bioinform. 7 (2006)
Stefania Bortoluzzi, Alessandro Coppe, Andrea Bisognin, Cinzia Pizzi, Gian Antonio Danieli
A multistep bioinformatic approach detects putative regulatory elements in gene promoters. BMC Bioinform. 6 (2005)
Andrea Bisognin, Stefania Bortoluzzi, Gian Antonio Danieli
Detection of chromosomal regions showing differential gene expression in human skeletal muscle and in alveolar rhabdomyosarcoma. BMC Bioinform. 5 (2004)
Stefania Bortoluzzi, F. d'Alessi, Chiara Romualdi, Gian Antonio Danieli
Differential expression of genes coding for ribosomal proteins in different human tissues. Bioinform. 17 (12) (2001)