Raffaele Giancarlo

ORCID

Publication Activity (10 Years)

Years Active: 1984-2024
Publications (10 Years): 45

Top Venues

Publications

Domenico Amato, Giosuè Lo Bosco, Raffaele Giancarlo
Correction to: Neural networks as building blocks for the design of efficient learned indexes. Neural Comput. Appl. 36 (2) (2024)
Paolo Ciancarini, Raffaele Giancarlo, Gennaro Grimaudo
Digital Transformation in the Public Administrations: A Guided Tour for Computer Scientists. IEEE Access 12 (2024)
Dario Malchiodi, Davide Raimondi, Giacomo Fumagalli, Raffaele Giancarlo, Marco Frasca
The role of classifiers and data complexity in learned Bloom filters: insights and recommendations. J. Big Data 11 (1) (2024)
Paolo Ciancarini, Raffaele Giancarlo, Gennaro Grimaudo
Scrum@PA: Tailoring an Agile Methodology to the Digital Transformation in the Public Sector. Inf. 15 (2) (2024)
Domenico Amato, Raffaele Giancarlo, Giosuè Lo Bosco
Learned Sorted Table Search and Static Indexes in Small-Space Data Models. Data 8 (3) (2023)
Dario Malchiodi, Davide Raimondi, Giacomo Fumagalli, Raffaele Giancarlo, Marco Frasca
A Critical Analysis of Classifier Selection in Learned Bloom Filters: The Essentials. EANN (2023)
Domenico Amato, Giosuè Lo Bosco, Raffaele Giancarlo
From Specific to Generic Learned Sorted Set Dictionaries: A Theoretically Sound Paradigm Yelding Competitive Data Structural Boosters in Practice. CoRR (2023)
Domenico Amato, Giosuè Lo Bosco, Raffaele Giancarlo
Neural networks as building blocks for the design of efficient learned indexes. Neural Comput. Appl. 35 (29) (2023)
Domenico Amato, Giosuè Lo Bosco, Raffaele Giancarlo
Standard versus uniform binary search and their variants in learned static indexing: The case of the searching on sorted data benchmarking software platform. Softw. Pract. Exp. 53 (2) (2023)
Raffaele Giancarlo, Giovanni Manzini, Antonio Restivo, Giovanna Rosone, Marinella Sciortino
A new class of string transformations for compressed text indexing. Inf. Comput. 294 (2023)
Paolo Ciancarini, Raffaele Giancarlo, Gennaro Grimaudo
Digital Transformation in the Public Administrations: a Guided Tour For Computer Scientists. CoRR (2023)
Umberto Ferraro Petrillo, Francesco Palini, Giuseppe Cattaneo, Raffaele Giancarlo
Correction to: FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy. BMC Bioinform. 23 (1) (2022)
Mariella Bonomo, Raffaele Giancarlo, Daniele Greco, Simona E. Rombo
Topological ranks reveal functional knowledge encoded in biological networks: a comparative analysis. Briefings Bioinform. 23 (3) (2022)
Domenico Amato, Giosuè Lo Bosco, Raffaele Giancarlo
On the Suitability of Neural Networks as Building Blocks for the Design of Efficient Learned Indexes. EANN (2022)
Raffaele Giancarlo, Giovanni Manzini, Antonio Restivo, Giovanna Rosone, Marinella Sciortino
A New Class of String Transformations for Compressed Text Indexing. CoRR (2022)
Dario Malchiodi, Davide Raimondi, Giacomo Fumagalli, Raffaele Giancarlo, Marco Frasca
A Critical Analysis of Classifier Selection in Learned Bloom Filters. CoRR (2022)
Domenico Amato, Giosuè Lo Bosco, Raffaele Giancarlo
On the Suitability of Neural Networks as Building Blocks for The Design of Efficient Learned Indexes. CoRR (2022)
Giuseppe Cattaneo, Umberto Ferraro Petrillo, Raffaele Giancarlo, Francesco Palini, Chiara Romualdi
The power of word-frequency-based alignment-free functions: a comprehensive large-scale experimental analysis. Bioinform. 38 (4) (2022)
Giacomo Fumagalli, Davide Raimondi, Raffaele Giancarlo, Dario Malchiodi, Marco Frasca
On the Choice of General Purpose Classifiers in Learned Bloom Filters: An Initial Analysis Within Basic Filters. ICPRAM (2022)
Raffaele Giancarlo, Gennaro Grimaudo
Pareto Optimal Compression of Genomic Dictionaries, with or without Random Access in Main Memory. CoRR (2022)
Domenico Amato, Giosuè Lo Bosco, Raffaele Giancarlo
Standard Vs Uniform Binary Search and Their Variants in Learned Static Indexing: The Case of the Searching on Sorted Data Benchmarking Software Platform. CoRR (2022)
Ylenia Galluzzo, Raffaele Giancarlo, Mario Randazzo, Simona E. Rombo
Burrows Wheeler Transform on a Large Scale: Algorithms Implemented in Apache Spark. CoRR (2021)
Giuseppe Cattaneo, Umberto Ferraro Petrillo, Raffaele Giancarlo, Francesco Palini, Chiara Romualdi
The Power of Alignment-Free Histogram-based Functions: a Comprehensive Genome Scale Experimental Analysis - Version 1. CoRR (2021)
Giacomo Fumagalli, Davide Raimondi, Raffaele Giancarlo, Dario Malchiodi, Marco Frasca
On the Choice of General Purpose Classifiers in Learned Bloom Filters: An Initial Analysis Within Basic Filters. CoRR (2021)
Umberto Ferraro Petrillo, Francesco Palini, Giuseppe Cattaneo, Raffaele Giancarlo
FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy. BMC Bioinform. 22 (1) (2021)
Domenico Amato, Giosuè Lo Bosco, Raffaele Giancarlo
Learned Sorted Table Search and Static Indexes in Small Model Space. AI*IA (2021)
Umberto Ferraro Petrillo, Francesco Palini, Giuseppe Cattaneo, Raffaele Giancarlo
Alignment-free Genomic Analysis via a Big Data Spark Platform. Bioinform. 37 (12) (2021)
Domenico Amato, Raffaele Giancarlo, Giosuè Lo Bosco
Learned Sorted Table Search and Static Indexes in Small Space: Methodological and Practical Insights via an Experimental Study. CoRR (2021)
Domenico Amato, Giosuè Lo Bosco, Raffaele Giancarlo
Learning from Data to Speed-up Sorted Table Search Procedures: Methodology and Practical Guidelines. CoRR (2020)
Umberto Ferraro Petrillo, Francesco Palini, Giuseppe Cattaneo, Raffaele Giancarlo
An Extensible, Scalable Spark Platform for Alignment-free Genomic Analysis - Version 2. CoRR (2020)
Raffaele Giancarlo, Giovanni Manzini, Antonio Restivo, Giovanna Rosone, Marinella Sciortino
The Alternating BWT: An algorithmic perspective. Theor. Comput. Sci. 812 (2020)
Umberto Ferraro Petrillo, Francesco Palini, Giuseppe Cattaneo, Raffaele Giancarlo
FASTA/Q Data Compressors for MapReduce-Hadoop Genomics: Space and Time Savings Made Easy - Version 1. CoRR (2020)
Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
DNA combinatorial messages and Epigenomics: The case of chromatin organization and nucleosome occupancy in eukaryotic genomes. Theor. Comput. Sci. 792 (2019)
Raffaele Giancarlo, Giovanni Manzini, Giovanna Rosone, Marinella Sciortino
A New Class of Searchable and Provably Highly Compressible String Transformations. CPM (2019)
Raffaele Giancarlo, Giovanni Manzini, Antonio Restivo, Giovanna Rosone, Marinella Sciortino
The Alternating BWT: an algorithmic perspective. CoRR (2019)
Raffaele Giancarlo, Giovanni Manzini, Giovanna Rosone, Marinella Sciortino
A New Class of Searchable and Provably Highly Compressible String Transformations. CoRR (2019)
Umberto Ferraro Petrillo, Mara Sorella, Giuseppe Cattaneo, Raffaele Giancarlo, Simona E. Rombo
Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics. BMC Bioinform. (4) (2019)
Umberto Ferraro Petrillo, Gianluca Roscigno, Giuseppe Cattaneo, Raffaele Giancarlo
Informational and linguistic analysis of large genomic sequence collections via efficient Hadoop cluster algorithms. Bioinform. 34 (11) (2018)
Raffaele Giancarlo, Giovanni Manzini, Antonio Restivo, Giovanna Rosone, Marinella Sciortino
Block Sorting-Based Transformations on Words: Beyond the Magic BWT. DLT (2018)
Umberto Ferraro Petrillo, Mara Sorella, Giuseppe Cattaneo, Raffaele Giancarlo, Simona E. Rombo
Analyzing Big Datasets of Genomic Sequences: Fast and Scalable Collection of k-mer Statistics. CoRR (2018)
Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
In vitro versus in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes. Bioinform. 34 (20) (2018)
Giuseppe Cattaneo, Umberto Ferraro Petrillo, Raffaele Giancarlo, Gianluca Roscigno
An effective extension of the applicability of alignment-free biological sequence comparison algorithms with Hadoop. J. Supercomput. 73 (4) (2017)
Umberto Ferraro Petrillo, Gianluca Roscigno, Giuseppe Cattaneo, Raffaele Giancarlo
FASTdoop: a versatile and efficient library for the input of FASTA and FASTQ files for MapReduce Hadoop bioinformatics applications. Bioinform. 33 (10) (2017)
Giuseppe Cattaneo, Raffaele Giancarlo, Stefano Piotto, Umberto Ferraro Petrillo, Gianluca Roscigno, Luigi Di Biasi
MapReduce in Computational Biology - A Synopsis. WIVACE (2016)
Filippo Utro, Valeria Di Benedetto, Davide F. V. Corona, Raffaele Giancarlo
The intrinsic combinatorial organization and information theoretic content of a sequence are correlated to the DNA encoded nucleosome organization of eukaryotic genomes. Bioinform. 32 (6) (2016)
Giuseppe Cattaneo, Umberto Ferraro Petrillo, Raffaele Giancarlo, Gianluca Roscigno
Alignment-Free Sequence Comparison over Hadoop for Computational Biology. ICPP Workshops (2015)
Raffaele Giancarlo, Davide Scaturro, Filippo Utro
ValWorkBench: An open source Java library for cluster validation, with applications to microarray data analysis. Comput. Methods Programs Biomed. 118 (2) (2015)
Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
nucleosome positioning. Bioinform. 31 (18) (2015)
Raffaele Giancarlo, Giosuè Lo Bosco, Filippo Utro
Bayesian versus data driven model selection for microarray data. Nat. Comput. 14 (3) (2015)
Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies. Briefings Bioinform. 15 (3) (2014)
Massimo Cossentino, Daniele Dalle Nogare, Raffaele Giancarlo, Carmelo Lodato, Salvatore Lopes, Patrizia Ribino, Luca Sabatucci, Valeria Seidita
GIMT: A Tool for Ontology and Goal Modeling in BDI Multi-Agent Design. WOA (2014)
Raffaele Giancarlo, Giovanni Manzini
Foreword. Theor. Comput. Sci. 483 (2013)
Raffaele Giancarlo, Giosuè Lo Bosco, Luca Pinello, Filippo Utro
A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis. BMC Bioinform. 14 (S-1) (2013)
Raffaele Giancarlo, Filippo Utro
Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis. Theor. Comput. Sci. 428 (2012)
Raffaele Giancarlo, Davide Scaturro, Filippo Utro
Textual data compression in computational biology: Algorithmic techniques. Comput. Sci. Rev. 6 (1) (2012)
Davide Corona, Valeria Di Benedetto, Raffaele Giancarlo, Filippo Utro
The Chromatin Organization of an Eukaryotic Genome : Sequence Specific+ Statistical=Combinatorial (Extended Abstract) CoRR (2012)
Raffaele Giancarlo, Filippo Utro
Stability-Based Model Selection for High Throughput Genomic Data: An Algorithmic Paradigm. ICARIS (2012)
Raffaele Giancarlo, Filippo Utro
Speeding up the Consensus Clustering methodology for microarray data analysis. Algorithms Mol. Biol. 6 (2011)
Raffaele Giancarlo, Giosuè Lo Bosco, Luca Pinello, Filippo Utro
The Three Steps of Clustering in the Post-Genomic Era: A Synopsis. CIBB (2010)
Raffaele Giancarlo, Davide Corona, Valeria Di Benedetto, Alessandra Gabriele, Filippo Utro
Functional Information, Biomolecular Messages and Complexity of BioSequences and Structures. Structure Discovery in Biology: Motifs, Networks & Phylogenies (2010)
Raffaele Giancarlo, Giosuè Lo Bosco, Luca Pinello
Distance Functions, Clustering Algorithms and Microarray Data Analysis. LION (2010)
Paolo Ferragina, Raffaele Giancarlo, Giovanni Manzini
The myriad virtues of Wavelet Trees. Inf. Comput. 207 (8) (2009)
Raffaele Giancarlo, Davide Scaturro, Filippo Utro
Textual data compression in computational biology: a synopsis. Bioinform. 25 (13) (2009)
Raffaele Giancarlo, Sridhar Hannenhalli
Guest Editors' Introduction to the Special Section on Algorithms in Bioinformatics. IEEE ACM Trans. Comput. Biol. Bioinform. 5 (4) (2008)
Raffaele Giancarlo, Davide Scaturro, Filippo Utro
Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer. BMC Bioinform. 9 (2008)
Adam L. Buchsbaum, Raffaele Giancarlo, Balázs Rácz
New results for finding common neighborhoods in massive graphs in the data stream model. Theor. Comput. Sci. 407 (1-3) (2008)
Alberto Apostolico, Raffaele Giancarlo
Periodicity and repetitions in parameterized strings. Discret. Appl. Math. 156 (9) (2008)
Raffaele Giancarlo, Stefano Lonardi
Foreword: Special issue in honor of the 60th Birthday of Professor Alberto Apostolico: Work is for people who do not know how to: SAIL - String Algorithms, Information and Learning. Theor. Comput. Sci. 395 (2-3) (2008)
Raffaele Giancarlo, Davide Scaturro, Filippo Utro
A Tutorial on Computational Cluster Analysis with Applications to Pattern Discovery in Microarray Data. Math. Comput. Sci. 1 (4) (2008)
Alberto Apostolico, Raffaele Giancarlo, Concettina Guerra, Giuseppe Lancia
Articles selected from posters presented at the Tenth Annual International Conference on Research in Computational Biology - Preface. BMC Bioinform. 8 (S-5) (2007)
Raffaele Giancarlo, Antonio Restivo, Marinella Sciortino
From first principles to the Burrows and Wheeler transform and beyond, via combinatorial optimization. Theor. Comput. Sci. 387 (3) (2007)
Raffaele Giancarlo, Alessandro Siragusa, Enrico Siragusa, Filippo Utro
A basic analysis toolkit for biological sequences. Algorithms Mol. Biol. 2 (2007)
Paolo Ferragina, Raffaele Giancarlo, Valentina Greco, Giovanni Manzini, Gabriel Valiente
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment. BMC Bioinform. 8 (2007)
Joong Chae Na, Raffaele Giancarlo, Kunsoo Park
log n) Time. Algorithmica 48 (2) (2007)
Paolo Ferragina, Raffaele Giancarlo, Giovanni Manzini
The Engineering of a Compression Boosting Library: Theory vs Practice in BWT Compression. ESA (2006)
Paolo Ferragina, Raffaele Giancarlo, Giovanni Manzini
The Myriad Virtues of Wavelet Trees. ICALP (1) (2006)
Alberto Apostolico, Raffaele Giancarlo
Periodicity and Repetitions in Parameterized Strings. Electron. Notes Discret. Math. 21 (2005)
Vito Di Gesù, Raffaele Giancarlo, Giosuè Lo Bosco, Alessandra Raimondi, Davide Scaturro
GenClust: A genetic algorithm for clustering gene expression data. BMC Bioinform. 6 (2005)
Joong Chae Na, Raffaele Giancarlo, Kunsoo Park
log n) Time On-Line Construction of Two-Dimensional Suffix Trees. COCOON (2005)
Alberto Apostolico, Raffaele Giancarlo
Foreword: Pattern Discovery in the Post Genome. Theor. Comput. Sci. 335 (1) (2005)
Paolo Ferragina, Raffaele Giancarlo, Giovanni Manzini, Marinella Sciortino
Boosting textual compression in optimal linear time. J. ACM 52 (4) (2005)
Maxime Crochemore, Raffaele Giancarlo, Marie-France Sagot
Longest Motifs with a Functionally Equivalent Central Block. SPIRE (2004)
Raffaele Giancarlo, David Sankoff
Editorial: Combinatiorial Pattern Matching. J. Discrete Algorithms 2 (2) (2004)
Adam L. Buchsbaum, Raffaele Giancarlo, Jeffery R. Westbrook
On finding common neighborhoods in massive graphs. Theor. Comput. Sci. 299 (1-3) (2003)
Raffaele Giancarlo, Marinella Sciortino
Optimal Partitions of Strings: A New Class of Burrows-Wheeler Compression Algorithms. CPM (2003)
Adam L. Buchsbaum, Glenn S. Fowler, Raffaele Giancarlo
Improving table compression with combinatorial optimization. J. ACM 50 (6) (2003)
Adam L. Buchsbaum, Glenn S. Fowler, Raffaele Giancarlo
Improving table compression with combinatorial optimization. SODA (2002)
Brenda S. Baker, Raffaele Giancarlo
Sparse Dynamic Programming for Longest Common Subsequence from Fragments. J. Algorithms 42 (2) (2002)
Adam L. Buchsbaum, Glenn S. Fowler, Raffaele Giancarlo
Improving Table Compression with Combinatorial Optimization CoRR (2002)
Adam L. Buchsbaum, Raffaele Giancarlo, Jeffery R. Westbrook
An Approximate Determinization Algorithm for Weighted Finite-State Automata. Algorithmica 30 (4) (2001)
Adam L. Buchsbaum, Raffaele Giancarlo
Algorithmic Aspects of Speech Recognition: A Synopsis. CPM (2000)
Adam L. Buchsbaum, Raffaele Giancarlo, Jeffery R. Westbrook
On the Determinization of Weighted Finite Automata. SIAM J. Comput. 30 (5) (2000)
Raffaele Giancarlo, Roberto Grossi
Parallel Construction and Query of Index Data Structures for Pattern Matching on Square Matrices. J. Complex. 15 (1) (1999)
Raffaele Giancarlo, Daniela Guaiana
On-line Construction of Two-Dimensional Suffix Trees. J. Complex. 15 (1) (1999)
Alberto Apostolico, Raffaele Giancarlo
Seqeunce Alignment in Molecular Biology. J. Comput. Biol. 5 (2) (1998)
Adam L. Buchsbaum, Raffaele Giancarlo, Jeffery R. Westbrook
On the Determinization of Weighted Finite Automata. ICALP (1998)
Brenda S. Baker, Raffaele Giancarlo
Longest Common Subsequence from Fragments via Sparse Dynamic Programming. ESA (1998)
Adam L. Buchsbaum, Raffaele Giancarlo, Jeffery R. Westbrook
Shrinking language models by robust approximation. ICASSP (1998)
Alberto Apostolico, Raffaele Giancarlo
Sequence alignment in molecular biology. Mathematical Support for Molecular Biology (1998)
Raffaele Giancarlo, Daniela Guaiana
On-Line Construction of Two-Dimensional Suffix Trees. ESA (1997)

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Publication Activity (10 Years)

Top Topics

Top Venues

Raffaele Giancarlo