Filippo Utro

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 13

Top Topics

Sequence Analysis

High Throughput

Discriminative Ability

Top Venues

Briefings Bioinform.

Theor. Comput. Sci.

Publications

Kahn Rhrissorrakrai, Filippo Utro, Chaya Levovitz, Laxmi Parida
Lesion Shedding Model: unraveling site-specific contributions to ctDNA. Briefings Bioinform. 24 (2) (2023)
Aritra Bose, Filippo Utro, Daniel E. Platt, Laxmi Parida
Multiple Loci Selection with Multi-Way Epistasis in Coalescence with Recombination. Algorithms 14 (5) (2021)
Sanjoy Dey, Aritra Bose, Subrata Saha, Prithwish Chakraborty, Mohamed F. Ghalwash, Filippo Utro, Aldo Guzmán-Sáenz, Kenney Ng, Jianying Hu, Laxmi Parida, Daby Sow
Impact of Clinical and Genomic Factors on COVID-19 Disease Severity. AMIA (2021)
Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
DNA combinatorial messages and Epigenomics: The case of chromatin organization and nucleosome occupancy in eukaryotic genomes. Theor. Comput. Sci. 792 (2019)
Enrico Siragusa, Niina Haiminen, Filippo Utro, Laxmi Parida
Linear Time Algorithms to Construct Populations Fitting Multiple Constraint Distributions at Genomic Scales. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (4) (2019)
Laxmi Parida, Claudia Haferlach, Kahn Rhrissorrakrai, Filippo Utro, Chaya Levovitz, Wolfgang Kern, Niroshan Nadarajah, Sven Twardziok, Stephan Hutter, Manja Meggendorfer, Wencke Walter, Constance Baer, Torsten Haferlach
Dark-matter matters: Discriminating subtle blood cancers using the darkest DNA. PLoS Comput. Biol. 15 (8) (2019)
Laxmi Parida, Filippo Utro
Simultaneous Phasing of Multiple Polyploids. CIBB (2018)
Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
In vitro versus in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes. Bioinform. 34 (20) (2018)
Saugata Basu, Filippo Utro, Laxmi Parida
Essential Simplices in Persistent Homology and Subtle Admixture Detection. WABI (2018)
Simona E. Rombo, Filippo Utro
Foreword: Algorithms, Strings and Theoretical Approaches in the Big Data Era - Special Issue in Honor of the 60th Birthday of Professor Raffaele Giancarlo. Theor. Comput. Sci. 698 (2017)
Filippo Utro, Daniel E. Platt, Laxmi Parida
A Quantitative and Qualitative Characterization of k-mer Based Alignment-Free Phylogeny Construction. CIBB (2017)
Anna Paola Carrieri, Filippo Utro, Laxmi Parida
Sampling ARG of multiple populations under complex configurations of subdivision and admixture. Bioinform. 32 (7) (2016)
Filippo Utro, Valeria Di Benedetto, Davide F. V. Corona, Raffaele Giancarlo
The intrinsic combinatorial organization and information theoretic content of a sequence are correlated to the DNA encoded nucleosome organization of eukaryotic genomes. Bioinform. 32 (6) (2016)
Laxmi Parida, Filippo Utro, Deniz Yörükoglu, Anna Paola Carrieri, David Kuhn, Saugata Basu
Topological Signatures for Population Admixture. RECOMB (2015)
Raffaele Giancarlo, Davide Scaturro, Filippo Utro
ValWorkBench: An open source Java library for cluster validation, with applications to microarray data analysis. Comput. Methods Programs Biomed. 118 (2) (2015)
Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
nucleosome positioning. Bioinform. 31 (18) (2015)
Raffaele Giancarlo, Giosuè Lo Bosco, Filippo Utro
Bayesian versus data driven model selection for microarray data. Nat. Comput. 14 (3) (2015)
Raffaele Giancarlo, Simona E. Rombo, Filippo Utro
Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies. Briefings Bioinform. 15 (3) (2014)
Daniel E. Platt, Filippo Utro, Laxmi Parida
Effect of sampling on the extent and accuracy of the inferred genetic history of recombining genome. Comput. Biol. Chem. 50 (2014)
Filippo Utro, Marc Pybus, Laxmi Parida
Sum of parts is greater than the whole: inference of common genetic history of populations. BMC Genom. 14 (S-1) (2013)
Raffaele Giancarlo, Giosuè Lo Bosco, Luca Pinello, Filippo Utro
A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis. BMC Bioinform. 14 (S-1) (2013)
Niina Haiminen, Filippo Utro, Claude Lebreton, Pascal Flament, Zivan Karaman, Laxmi Parida
Chromosomal Representation of Populations via Indexing Ancestral Genomes. Algorithms 6 (3) (2013)
Raffaele Giancarlo, Filippo Utro
Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis. Theor. Comput. Sci. 428 (2012)
Raffaele Giancarlo, Davide Scaturro, Filippo Utro
Textual data compression in computational biology: Algorithmic techniques. Comput. Sci. Rev. 6 (1) (2012)
Davide Corona, Valeria Di Benedetto, Raffaele Giancarlo, Filippo Utro
The Chromatin Organization of an Eukaryotic Genome : Sequence Specific+ Statistical=Combinatorial (Extended Abstract) CoRR (2012)
Filippo Utro, Omar Cornejo, Donald Livingstone, Juan Motamayor, Laxmi Parida
ARG-based genome-wide analysis of cacao cultivars. BMC Bioinform. 13 (S-19) (2012)
Raffaele Giancarlo, Filippo Utro
Stability-Based Model Selection for High Throughput Genomic Data: An Algorithmic Paradigm. ICARIS (2012)
Aristotelis Tsirigos, Niina Haiminen, Erhan Bilal, Filippo Utro
: a computational platform for developing high-throughput analytics in genomics. Bioinform. 28 (2) (2012)
Asif Javed, Marc Pybus, Marta Melé, Filippo Utro, Jaume Bertranpetit, Francesc Calafell, Laxmi Parida
IRiS: Construction of ARG networks at genomic scales. Bioinform. 27 (17) (2011)
Filippo Utro
Algorithms for Internal Validation Clustering Measures in the Post Genomic Era CoRR (2011)
Raffaele Giancarlo, Filippo Utro
Speeding up the Consensus Clustering methodology for microarray data analysis. Algorithms Mol. Biol. 6 (2011)
Raffaele Giancarlo, Giosuè Lo Bosco, Luca Pinello, Filippo Utro
The Three Steps of Clustering in the Post-Genomic Era: A Synopsis. CIBB (2010)
Raffaele Giancarlo, Davide Corona, Valeria Di Benedetto, Alessandra Gabriele, Filippo Utro
Functional Information, Biomolecular Messages and Complexity of BioSequences and Structures. Structure Discovery in Biology: Motifs, Networks & Phylogenies (2010)
Raffaele Giancarlo, Davide Scaturro, Filippo Utro
Textual data compression in computational biology: a synopsis. Bioinform. 25 (13) (2009)
Raffaele Giancarlo, Davide Scaturro, Filippo Utro
Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer. BMC Bioinform. 9 (2008)
Raffaele Giancarlo, Davide Scaturro, Filippo Utro
A Tutorial on Computational Cluster Analysis with Applications to Pattern Discovery in Microarray Data. Math. Comput. Sci. 1 (4) (2008)
Raffaele Giancarlo, Alessandro Siragusa, Enrico Siragusa, Filippo Utro
A basic analysis toolkit for biological sequences. Algorithms Mol. Biol. 2 (2007)