Niina Haiminen

Publication Activity (10 Years)

Years Active: 2004-2020
Publications (10 Years): 9

Top Topics

Extended Abstract

Integer Arithmetic

Temporal Scales

Top Venues

Publications

Lingjing Jiang, Niina Haiminen, Anna Paola Carrieri, Shi Huang, Yoshiki Vazquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Austin D. Swafford, Rob Knight, Loki Natarajan
Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data. CoRR (2020)
Sayan Mandal, Aldo Guzmán-Sáenz, Niina Haiminen, Saugata Basu, Laxmi Parida
A Topological Data Analysis Approach on Predicting Phenotypes from Gene Expression Data. AlCoB (2020)
Enrico Siragusa, Niina Haiminen, Richard Finkers, Richard G. F. Visser, Laxmi Parida
Haplotype assembly of autotetraploid potato using integer linear programing. Bioinform. 35 (18) (2019)
Enrico Siragusa, Niina Haiminen, Filippo Utro, Laxmi Parida
Linear Time Algorithms to Construct Populations Fitting Multiple Constraint Distributions at Genomic Scales. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (4) (2019)
Enrico Siragusa, Niina Haiminen, Richard Finkers, Richard G. F. Visser, Laxmi Parida
Haplotype assembly of autotetraploid potato using integer linear programing. Bioinform. 35 (21) (2019)
Aldo Guzmán-Sáenz, Niina Haiminen, Saugata Basu, Laxmi Parida
Signal enrichment with strain-level resolution in metagenomes using topological data analysis. BMC Genom. 20 (S2) (2019)
Anna Paola Carrieri, Niina Haiminen, Laxmi Parida
Host Phenotype Prediction from Differentially Abundant Microbes Using RoDEO. CIBB (2016)
Laxmi Parida, Niina Haiminen
Scalable Algorithms at Genomic Resolution to fit LD Distributions. BCB (2016)
Stefan Edlund, Kristen L. Beck, Niina Haiminen, Laxmi Parida, Brian D. Storey, Bart C. Weimer, James H. Kaufman, David D. Chambliss
Design of the MCAW compute service for food safety bioinformatics. IBM J. Res. Dev. 60 (5/6) (2016)
Laxmi Parida, Niina Haiminen
SimBA: simulation algorithm to fit extant-population distributions. BMC Bioinform. 16 (2015)
Laxmi Parida, Niina Haiminen, David Haws, Jan Suchodolski
Host Trait Prediction of Metagenomic Data for Topology-Based Visualization. ICDCIT (2015)
Niina Haiminen, Claude Lebreton, Laxmi Parida
Best-Fit in Linear Time for Non-generative Population Simulation - (Extended Abstract). WABI (2014)
Niina Haiminen, Filippo Utro, Claude Lebreton, Pascal Flament, Zivan Karaman, Laxmi Parida
Chromosomal Representation of Populations via Indexing Ancestral Genomes. Algorithms 6 (3) (2013)
Aristotelis Tsirigos, Niina Haiminen, Erhan Bilal, Filippo Utro
: a computational platform for developing high-throughput analytics in genomics. Bioinform. 28 (2) (2012)
Aleksi Kallio, Niko Vuokko, Markus Ojala, Niina Haiminen, Heikki Mannila
Randomization techniques for assessing the significance of gene periodicity results. BMC Bioinform. 12 (2011)
Niina Haiminen, Heikki Mannila
Evaluation of BIC and Cross Validation for model selection on sequence segmentations. Int. J. Data Min. Bioinform. 4 (6) (2010)
Markus Ojala, Niko Vuokko, Aleksi Kallio, Niina Haiminen, Heikki Mannila
Randomization methods for assessing data analysis results on real-valued matrices. Stat. Anal. Data Min. 2 (4) (2009)
Niina Haiminen, Heikki Mannila, Evimaria Terzi
Determining significance of pairwise co-occurrences of events in bursty sequences. BMC Bioinform. 9 (2008)
Markus Ojala, Niko Vuokko, Aleksi Kallio, Niina Haiminen, Heikki Mannila
Randomization of real-valued matrices for assessing the significance of data mining results. SDM (2008)
Niina Haiminen, Aristides Gionis, Kari Laasonen
Algorithms for unimodal segmentation with applications to unimodality detection. Knowl. Inf. Syst. 14 (1) (2008)
Niina Haiminen, Heikki Mannila, Evimaria Terzi
Comparing segmentations by applying randomization techniques. BMC Bioinform. 8 (2007)
Ella Bingham, Aristides Gionis, Niina Haiminen, Heli Hiisilä, Heikki Mannila, Evimaria Terzi
Segmentation and dimensionality reduction. SDM (2006)
Niina Haiminen, Aristides Gionis
Unimodal Segmentation of Sequences. ICDM (2004)