Gabriel Valiente

Publication Activity (10 Years)

Years Active: 1991-2024
Publications (10 Years): 11

Top Topics

Protein Interaction

Dissimilarity Measure

Top Venues

J. Comput. Biol.

Publications

Alberto José Ferrari, Valeria A. Leoni, Graciela L. Nasini, Gabriel Valiente
Minimizing External Vertices in Hypergraph Orientations. ISCO (2024)
Elahe Khayatian, Gabriel Valiente, Louxin Zhang
-Robinson-Foulds Dissimilarity Measures for Comparison of Labeled Trees. J. Comput. Biol. 31 (4) (2024)
Elahe Khayatian, Gabriel Valiente, Louxin Zhang
The K-Robinson Foulds Measures for Labeled Trees. RECOMB-CG (2023)
Gabriel Valiente
Adjacency Maps and Efficient Graph Algorithms. Algorithms 15 (2) (2022)
Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
The Generalized Robinson-Foulds Distance for Phylogenetic Trees. J. Comput. Biol. 28 (12) (2021)
Mercè Llabrés, Gabriel Riera, Francesc Rosselló, Gabriel Valiente
Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks. BMC Bioinform. (6) (2020)
Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
A Generalized Robinson-Foulds Distance for Clonal Trees, Mutation Trees, and Phylogenetic Trees and Networks. BCB (2020)
Adrià Alcalà, Ricardo Alberich, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
AligNet: alignment of protein-protein interaction networks. BMC Bioinform. (6) (2020)
Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente
Unbiased Taxonomic Annotation of Metagenomic Samples. J. Comput. Biol. 25 (3) (2018)
Bruno Fosso, Monica Santamaria, Mattia D'Antonio, Domenica Lovero, G. Corrado, Enrico Vizza, N. Pássaro, Anna Rosa Garbuglia, M. R. Capobianchi, Marco Crescenzi, Gabriel Valiente, Graziano Pesole
MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data. Bioinform. 33 (11) (2017)
Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente
Unbiased Taxonomic Annotation of Metagenomic Samples. ISBRA (2017)
Bruno Fosso, Monica Santamaria, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Giacinto Donvito, Alfonso Monaco, Pasquale Notarangelo, Graziano Pesole
BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS. BMC Bioinform. 16 (2015)
Daniel Alonso-Alemany, Aurélien Barré, Stefano Beretta, Paola Bonizzoni, Macha Nikolski, Gabriel Valiente
Further Steps in TANGO: improved taxonomic assignment in metagenomics. Bioinform. 30 (1) (2014)
Tetsuo Asano, Jesper Jansson, Kunihiko Sadakane, Ryuhei Uehara, Gabriel Valiente
Faster computation of the Robinson-Foulds distance between phylogenetic networks. Inf. Sci. 197 (2012)
Gabriel Valiente, Graziano Pesole
Editorial. Briefings Bioinform. 13 (6) (2012)
Monica Santamaria, Bruno Fosso, Arianna Consiglio, Giorgio De Caro, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Graziano Pesole
Reference databases for taxonomic assignment in metagenomics. Briefings Bioinform. 13 (6) (2012)
Moshe Lewenstein, Gabriel Valiente
CPM 2006. J. Discrete Algorithms 9 (4) (2011)
José Carlos Clemente, Jesper Jansson, Gabriel Valiente
Flexible taxonomic assignment of ambiguous sequencing reads. BMC Bioinform. 12 (2011)
Paolo Ribeca, Gabriel Valiente
Computational challenges of sequence classification in microbiomic data. Briefings Bioinform. 12 (6) (2011)
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
Comparison of Galled Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (2) (2011)
Mallika Veeramalai, David R. Gilbert, Gabriel Valiente
An optimized TOPS+ comparison method for enhanced TOPS models. BMC Bioinform. 11 (2010)
José Carlos Clemente, Jesper Jansson, Gabriel Valiente
Accurate Taxonomic Assignment of Short Pyrosequencing Reads. Pacific Symposium on Biocomputing (2010)
Miguel Arenas, Mateus Patricio, David Posada, Gabriel Valiente
Characterization of phylogenetic networks with NetTest. BMC Bioinform. 11 (2010)
Tetsuo Asano, Jesper Jansson, Kunihiko Sadakane, Ryuhei Uehara, Gabriel Valiente
Faster Computation of the Robinson-Foulds Distance between Phylogenetic Networks. CPM (2010)
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
Path lengths in tree-child time consistent hybridization networks. Inf. Sci. 180 (3) (2010)
Ricardo Alberich, Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
An algebraic metric for phylogenetic trees. Appl. Math. Lett. 22 (9) (2009)
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
On Nakhleh's Metric for Reduced Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (4) (2009)
Francesc Rosselló, Gabriel Valiente
All that Glisters is not Galled CoRR (2009)
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
Comparison of Galled Trees CoRR (2009)
Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
Comparison of Tree-Child Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (4) (2009)
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
Metrics for Phylogenetic Networks II: Nodal and Triplets Metrics. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (3) (2009)
José Carlos Clemente, Kazuho Ikeo, Gabriel Valiente, Takashi Gojobori
Optimized ancestral state reconstruction using Sankoff parsimony. BMC Bioinform. 10 (2009)
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (1) (2009)
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
The comparison of tree-sibling time consistent phylogenetic networks is graph isomorphism-complete CoRR (2009)
Michael Sammeth, Gabriel Valiente, Roderic Guigó
Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. RECOMB (2008)
Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson
Seeded Tree Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 5 (4) (2008)
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
Nodal distances for rooted phylogenetic trees. CoRR (2008)
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
Path lengths in tree-child time consistent hybridization networks CoRR (2008)
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
A distance metric for a class of tree-sibling phylogenetic networks. Bioinform. 24 (13) (2008)
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
A Distance Metric for Tree-Sibling Time Consistent Phylogenetic Networks CoRR (2008)
Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
A perl package and an alignment tool for phylogenetic networks. BMC Bioinform. 9 (2008)
Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
Extended Newick: it is time for a standard representation of phylogenetic networks. BMC Bioinform. 9 (2008)
Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
Tripartitions do not always discriminate phylogenetic networks CoRR (2007)
Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson
Seeded Tree Alignment and Planar Tanglegram Layout. WABI (2007)
José Carlos Clemente, Kenji Satou, Gabriel Valiente
Phylogenetic reconstruction from non-genomic data. Bioinform. 23 (2) (2007)
Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
Comparison of Tree-Child Phylogenetic Networks CoRR (2007)
Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
A Perl Package and an Alignment Tool for Phylogenetic Networks CoRR (2007)
Paolo Ferragina, Raffaele Giancarlo, Valentina Greco, Giovanni Manzini, Gabriel Valiente
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment. BMC Bioinform. 8 (2007)
Ryuhei Uehara, Gabriel Valiente
Linear structure of bipartite permutation graphs and the longest path problem. Inf. Process. Lett. 103 (2) (2007)
Liliana Félix, Francesc Rosselló, Gabriel Valiente
Reconstructing Metabolic Pathways by Bidirectional Chemical Search. CMSB (2007)
Francesc Rosselló, Gabriel Valiente
An Algebraic View of the Relation between Largest Common Subtrees and Smallest Common Supertrees CoRR (2006)
Francesc Rosselló, Gabriel Valiente
The transposition distance for phylogenetic trees CoRR (2006)
Francesc Rosselló, Gabriel Valiente
An algebraic view of the relation between largest common subtrees and smallest common supertrees. Theor. Comput. Sci. 362 (1-3) (2006)
Gabriel Valiente
A Fast Algorithmic Technique for Comparing Large Phylogenetic Trees. SPIRE (2005)
Liliana Félix, Gabriel Valiente, Francesc Rosselló
Optimal Artificial Chemistries and Metabolic Pathways. ENC (2005)
Gabriel Valiente
Constrained tree inclusion. J. Discrete Algorithms 3 (2-4) (2005)
Francesc Rosselló, Gabriel Valiente
Chemical Graphs, Chemical Reaction Graphs, and Chemical Graph Transformation. Electron. Notes Theor. Comput. Sci. 127 (1) (2005)
Francesc Rosselló, Gabriel Valiente
Graph Transformation in Molecular Biology. Formal Methods in Software and Systems Modeling (2005)
Mercè Llabrés, Jairo Rocha, Francesc Rosselló, Gabriel Valiente
On the Ancestral Compatibility of Two Phylogenetic Trees with Nested Taxa CoRR (2005)
Roderic D. M. Page, Gabriel Valiente
An edit script for taxonomic classifications. BMC Bioinform. 6 (2005)
Liliana Félix, Francesc Rosselló, Gabriel Valiente
Artificial Chemistries and Metabolic Pathways. Spanish Bioinformatics Conference (2004)
Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
On Supertrees of Phylogenetic Trees. Spanish Bioinformatics Conference (2004)
Francesc Rosselló, Gabriel Valiente
Analysis of Metabolic Pathways by Graph Transformation. ICGT (2004)
Gabriel Valiente
On the Algorithm of Berztiss for Tree Pattern Matching. ENC (2004)
Gabriel Valiente
Trading uninitialized space for time. Inf. Process. Lett. 92 (1) (2004)
Gabriel Valiente
A New Simple Algorithm for the Maximum-Weight Independent Set Problem on Circle Graphs. ISAAC (2003)
Gabriel Valiente
Constrained Tree Inclusion. CPM (2003)
Javier Larrosa, Gabriel Valiente
Constraint Satisfaction Algorithms for Graph Pattern Matching. Math. Struct. Comput. Sci. 12 (4) (2002)
Gabriel Valiente
An Efficient Bottom-Up Distance between Trees. SPIRE (2001)
Gabriel Valiente
A General Method for Graph Isomorphism. FCT (2001)
Mirtha-Lina Fernández, Gabriel Valiente
A graph distance metric combining maximum common subgraph and minimum common supergraph. Pattern Recognit. Lett. 22 (6/7) (2001)
Ricardo A. Baeza-Yates, Gabriel Valiente
An Image Similarity Measure Based on Graph Matching. SPIRE (2000)
Jordi Cortadella, Gabriel Valiente
A Relational View of Subgraph Isomorphism. RelMiCS (2000)
Peter Burmeister, Miquel Monserrat, Francesc Rosselló, Gabriel Valiente
Algebraic Transformation of Unary Partial Algebras II: Single-Pushout Approach. Theor. Comput. Sci. 216 (1-2) (1999)
Hans-Jörg Kreowski, Gabriel Valiente
Redundancy and Subsumption in High-Level Replacement Systems. TAGT (1998)
Peter Burmeister, Francesc Rosselló, Joan Torrens, Gabriel Valiente
Algebraic Transformation of Unary Partial Algebras I: Double-Pushout Approach. Theor. Comput. Sci. 184 (1-2) (1997)
Miquel Monserrat, Francesc Rosselló, Joan Torrens, Gabriel Valiente
Hypergraph rewriting using conformisms. Electron. Notes Theor. Comput. Sci. 2 (1995)
Ricardo Alberich, Peter Burmeister, Francesc Rosselló, Gabriel Valiente, Boleslaw Wojdylo
A Partial Algebras Approach to Graph Transformation. TAGT (1994)
Gabriel Valiente
Input-Driven Control of Rule-Based Expert Systems. ISMIS (1993)
Gabriel Valiente
Using Layered Support Graphs for Verifying External Adequacy in Rule-Based Expert Systems. SIGART Bull. 3 (1) (1992)
Gabriel Valiente
On Knowledge Base Redundancy Under Uncertain Reasoning. IPMU (1992)
Gabriel Valiente
On Being a Machine: A Review. AI Mag. 12 (4) (1991)